Array 1 8473-9723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACACW010000046.1 Klebsiella pneumoniae strain BKQ7D2 .WTCHG_302459_206.46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 8473 28 100.0 33 ............................ CCTGGCCGTCACGGTGCATCTGCCACAGGGAGG 8534 28 100.0 33 ............................ TGAGCATGGGTGGCCAGCTGACGCGATTGAAAA 8595 28 100.0 33 ............................ TGCTGCTTTCCATGTTGCGCTGGTAACCTGCGC 8656 28 100.0 33 ............................ CCGTTGGTTCTGCTGGAGTCTTTGTAGTTTCAA 8717 28 100.0 33 ............................ CGCGTTCAAGCGGGAAGTTCCAGCCGAACGCGT 8778 28 100.0 33 ............................ CTTTCTTCCACGGCACCTCTGAAGATTCAGCGA 8839 28 100.0 33 ............................ CCAGAACCATGCCCCCGTGGTGGACATTGGTGG 8900 28 100.0 33 ............................ CCATGCGCACCTCTGCTGGCCATACTGTTTCCT 8961 28 100.0 33 ............................ TAGCTTTTAAGGGGAATAAAAAGCCCCCGGGCG 9022 28 100.0 33 ............................ TTCGTCGCCCTTTTAGCCGCTTGTGTTCTTGCC 9083 28 100.0 33 ............................ TCGGGTTTTTCGATACAGGTGTCTCTCGCGACC 9144 28 100.0 33 ............................ TACTCGCGATTTTCGACGGCCCCCGTAGACCCC 9205 28 100.0 33 ............................ TCCAACGACGATCTGGTGTAAGCCATGACGTTC 9266 28 100.0 33 ............................ CCAGTGGATCAATAACGTCGCTGTAAAATTTGG 9327 28 100.0 33 ............................ CTGATGGAGGAGCAAAAACGCTACAACATGGTC 9388 28 100.0 33 ............................ CTCTTTTGTCTCTATCCCTGTCTACTGGGTTTT 9449 28 100.0 33 ............................ CGACTGGATCACGTACCTGATCAGCGTAGTGGT 9510 28 100.0 33 ............................ CACTGGGGTAACTGGGCATTCAGCCCGGCCGAG 9571 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 9632 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 9696 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 21 28 98.1 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAAGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTAGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAAGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1047-287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACACW010000006.1 Klebsiella pneumoniae strain BKQ7D2 .WTCHG_302459_206.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1046 28 100.0 33 ............................ CATCACTACGGCCTGAGACTGCGCCCGGGATTG 985 28 100.0 33 ............................ CGTATCGGCTGAGTTTGACAGGCTGACAGCCAG 924 28 100.0 33 ............................ TGACTTCAGGCGCGCAATGTCGGCCTTGCGGAA 863 28 100.0 33 ............................ CTCACCGGCGCGCTGGCCAAAACAAAAATTGAT 802 28 100.0 33 ............................ CTGACCTCCCTGCTGATGTGGCGCAAGAGTGTC 741 28 100.0 33 ............................ CCCTCGTTTGAGCGAACGCCTTTTTTGGAGCAA 680 28 100.0 33 ............................ CCGCTTTCCAGTCACGCAGTGATTTGATGGTTT 619 28 100.0 33 ............................ CACCTTTCCTTCATTCGCTCCCTTCTCAGGGCC 558 28 100.0 33 ............................ TTAGCAAGTCGGCGGACGTCATCGGATGCTCAC 497 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 436 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 375 28 96.4 33 ..............T............. TTCATCATGTGTGAGCGGATTTGGCTCTATCCT 314 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGACGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGACGGGCAGGCCAGTAGGGTAGACCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //