Array 1 4348-4794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHN01000113.1 Gallibacterium anatis DSM 16844 = F 149 strain F149 contig000106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4348 28 100.0 32 ............................ ATTGCAAAGTGTGTTATGACGCACTCCCTGTA 4408 28 100.0 32 ............................ GTTTAACCGTTTAAACACTATTTAGCTAGTGA 4468 28 100.0 32 ............................ CCAACAAAGGAGGTAAAAATGGAAAAATCAAA 4528 28 100.0 32 ............................ GTTATTACACCGTTTAACGGTTAAACAGTCTA 4588 28 100.0 32 ............................ AAGAACATTTATTTGATGACTTTATCATAACA 4648 28 100.0 32 ............................ TTAGCCAATAGGCTGTTCATTGTTGATTGATA 4708 28 100.0 32 ............................ TAATTTAATCGCGAATTTAACTATTAAATTAC 4768 27 78.6 0 ..............-..A.AT..TA... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGTAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACCTCTAAAAAAGGTTTTTTATCTTAAAATGTTCTTTAACAATTGACTCTCCTTATATCGTAAGGTATTTGTGTCTA # Right flank : TACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTGTCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTTGATCTGCACCCCAAAAGTTGGACTTATTATCCAACAACATACAAAGGTGCAGATTTTTTATGACTAAATATAACCAAACATTTAAACAACAAGTGGTAGATTTCTACTTTCAACACGAGGAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 696-1726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHN01000094.1 Gallibacterium anatis DSM 16844 = F 149 strain F149 contig000088a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 696 32 100.0 35 ................................ ACAAGCGGACATTCTCAAACCGTTATTTTTAAAAT 763 32 100.0 33 ................................ CTCTTTCATTTTATCGATAACGGATTGTAAATG 828 32 100.0 36 ................................ GTGCTAATAGCCGTTGTTCAGATACGGCTACAATTC 896 32 100.0 34 ................................ ATCGATAGATCGCCCTGCATTACTCTATCAACGA 962 32 100.0 36 ................................ ACTAAGGCGTATCGTTGTTGATACAGCTCATAGCCA 1030 32 100.0 34 ................................ TGATTTTGTCACTGACATAATATTTTTATTCTTC 1096 32 100.0 35 ................................ CGGCAAAAGGCGCAGCAATTACAACATTATCTAAT 1163 32 100.0 34 ................................ TTAGCCTCATTATCCTGCCGGCTTAAAACTTGCC 1229 32 100.0 34 ................................ CCTAATGCCTACTTAACCGCCATTTTAGGAGAAA 1295 32 100.0 33 ................................ CCTACTAGAGGGTCTTTTATTCGGCTCTCTCGC 1360 32 100.0 34 ................................ ATATTGCAAACAAACAATAATCTGGTTAAGTAGG 1426 32 100.0 36 ................................ TTGACTTATTCGGGTTATTTTTTGCGATCCAATCTT 1494 32 100.0 35 ................................ GTGATAATCTTGCTATTGTTGGGCGTGGAATCAAT 1561 32 100.0 36 ................................ ACCTTTACAACCAATCAAGCAAAGGCAAAACAACCA 1629 32 100.0 34 ................................ GCCGTTAGTACTTACAATATCATAACCGTTTCTA 1695 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 100.0 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTAAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCACTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGCT # Right flank : CTGTAAAGGCAGTTTGTCACCCTGCTACACGCTATCGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 48-2150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHN01000095.1 Gallibacterium anatis DSM 16844 = F 149 strain F149 contig000088b, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 48 32 100.0 37 ................................ TCTTTTCCGTTGGATTATCTTTATCAAATCTAAACCT 117 32 100.0 34 ................................ TTTAAAAGATCAACCGAATGCACCGCTTAATGAA 183 32 100.0 37 ................................ AAACAATGAAAAATACAATGATGTTGCTGTTATAGAG 252 32 100.0 32 ................................ CTACTCTTCAGGCTTAGCTGTTAAAAACAGTT 316 32 100.0 34 ................................ TTCGCAAATGAATACCTTAATGCCTACTTAACCG 382 32 100.0 33 ................................ ATTCATTTTCTTGCTCCTGTTTTTTGGTAATAA 447 32 100.0 34 ................................ TACCTAAAAATCCTCTTAATCTGACTAAATTAAG 513 32 100.0 34 ................................ TGATTTTGGCACGAATAACCGAGAAAAGACGGTT 579 32 100.0 37 ................................ TCGTTAAATTCCATTTCAACGCCGTTAAACGCTGCAA 648 32 100.0 34 ................................ CACTCAAGCAAGTAAGCAGTGCTGCCCTTGACCT 714 32 100.0 36 ................................ ATTCTGCAGTGCCGTTGCCGGTAACCAGTACAGGGT 782 32 100.0 33 ................................ AGAAGAGTTTTTAGAGGGGGCAATGTTTGGTTG 847 32 100.0 35 ................................ ACCTCGATCGAACATTAATCTTGTCCGTTTACGGC 914 32 100.0 35 ................................ AGTTTAAGAAATGACGAAAAAACAAAAGAAGTTAG 981 32 100.0 33 ................................ ATTTTATTGCGTTCCGCCAATTCTTTAGCAGTA 1046 32 100.0 36 ................................ CCTAATGGGAAACACGATGACCGGATAGATGCACTT 1114 32 100.0 35 ................................ AATGCTTCTATGTTGAGGTCTGGATTTAATCTTTT 1181 32 100.0 34 ................................ TCTTTTGTCATTTCTTTTTGATTGATAATCATTT 1247 32 100.0 33 ................................ AGTTAATAGGGGGGGCCAATGCCTAGAACACTG 1312 32 100.0 34 ................................ AAGTAAAAGTAAGACGAGGCGCACAGGTAGATTA 1378 32 100.0 35 ................................ ATCCCAATATTGCTTTATATAGCCGATATTAAGTA 1445 32 100.0 35 ................................ AAGAAAGATCAGTTTGGGTGAATATCCGTTTTTAT 1512 32 96.9 34 ................A............... CATTTTCTGGATCTATCATATGCCGCGCGAACCT 1578 32 100.0 37 ................................ TCGTTTCCCCTAGCCAACATTCCAACATCAGCCAAAA 1647 32 100.0 35 ................................ TACTAACTCAGGGCAAGGTGTTTGACTTGGGATAG 1714 32 100.0 36 ................................ ATTTTTATATGTGAGAGTTTTCATAATTTTTTCCTT 1782 32 100.0 36 ................................ TTACGCAGATCAATCCTAACAAAACCTTGCTAGAGT 1850 32 100.0 35 ................................ ACTTTGTATGGCAGGGGCATTAAAAGGCTGATGAT 1917 32 100.0 34 ................................ CTAACACTTACTTATCGCAAGTTAAGAAAGTTTC 1983 32 100.0 36 ................................ TACCATGTCAACAAATCTACCTTTATTAGTGATAAA 2051 32 100.0 36 ................................ GACGTATTTAATGCAAAAAAATTTATCGTTAAATTC 2119 32 87.5 0 .....A.....................T..GT | ========== ====== ====== ====== ================================ ===================================== ================== 32 32 99.5 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : GTGAATTGAAACCATTCGCCGCTCTGTTTATCCTGCCATTTTTCACTC # Right flank : TCAATACCAAATCATCTCAGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCGTCATTAATCATTACCTAACACATTCAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACTGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAGTAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTATGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTTTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //