Array 1 111719-113518 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVUA01000006.1 Klebsiella pneumoniae strain L3734 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111719 29 100.0 32 ............................. CAGCTGGCCGTTTTGATATGGACGACGCGCAA 111780 29 100.0 32 ............................. CAGAAATTTACCGTTGCGCCGGCGGTTCAGCA 111841 29 100.0 32 ............................. CGCAGCTGGATTCCGAGCGCGTGGTGTTCGGC 111902 29 100.0 33 ............................. AGGTATCAGCAGAAATGCTGACCCGGATCCTGC 111964 29 100.0 32 ............................. GTGCGGAACAAACCAGTAGGTGTCCAGGTCGT 112025 29 100.0 32 ............................. CTAAACCCTTTCCCCTGGACGGAGGCGCTCAC 112086 29 100.0 32 ............................. ATTAACGTTTTAATCCCGATATAGTCACTGGA 112147 29 100.0 32 ............................. TGACAACCAGATCCGAAAATCCTGGAGCCGTG 112208 29 100.0 32 ............................. CCATTTCCCCGAGTCAAAATCAGTAAAAAAAT 112269 29 100.0 32 ............................. GCGCGCGCCTCTTCGAGTTGTCGTATCAGCGA 112330 29 100.0 32 ............................. GGGACAAAAAATATCGGCGCCAACGCGGCACG 112391 29 100.0 32 ............................. CACTGATCGCGGCGTATAGCGATACGGGCCCG 112452 29 100.0 32 ............................. GCTATTGACGGGCTGAAAGAGGTGCAGGAGGC 112513 29 100.0 32 ............................. CATTTCAGGCGGCAGGGCGCGCACAACTTGCC 112574 29 100.0 32 ............................. CATACAGTATTATCATAGCGAATTCCCATTGG 112635 29 100.0 32 ............................. CCACCGAACTGGCCGTGCACATTCACCTCAAA 112696 29 100.0 32 ............................. GCGCTCGACCGCCAGACAATCGGCTTTAACGG 112757 29 96.6 32 .............T............... TTTGCGGAAAAAGTGGCCGCGTATTCCGGATT 112818 29 100.0 32 ............................. AGTGCTACACCGATACTGGCCCATCATTCCAG 112879 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 112940 29 96.6 33 ............................T GGCGGCGCGACAAAAATTATACCCAGCAACGAA 113002 29 96.6 32 ............................A GTCGATCCCCACGGTTGAGAAATTATTGACCC 113063 29 100.0 32 ............................. CGGAGGGTTGCCAACCGATGATTTCAGCAAGG 113124 29 96.6 32 ............................C CCTGAATCCGTCAACGTTTGGAGTCTTGAGTT 113185 29 100.0 32 ............................. AAATAATCGTGCTGCTCTGACGTACCGGGCAC 113246 29 100.0 32 ............................. CGCTTCAGGGAGAAGAAACTTCCTTCGGCGCC 113307 29 100.0 32 ............................. ATAAGGCCTGGCTTTAACTCAACGGAGCACGG 113368 29 100.0 32 ............................. GGATTTCCATCTCCGGCGTCTGACTACGTTGA 113429 29 96.6 32 ..........A.................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 113490 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGACACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCAGGAAAGTTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2683-1441 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVUA01000015.1 Klebsiella pneumoniae strain L3734 scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2682 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 2621 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 2560 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2499 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2438 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2377 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 2316 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2255 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [2202] 2201 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2140 29 100.0 32 ............................. CCGAGATTGATTAAAGCAAAGTAACGGCGGTG 2079 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 2018 28 89.7 32 .....-......CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1958 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1897 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1836 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1831] 1774 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [1768] 1711 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1650 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1590 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1529 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1468 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 93.8 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //