Array 1 9273-8724 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRS01000020.1 Garciella nitratireducens strain GHB3 Ga0255681_120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================================================================== ================== 9272 27 71.4 148 ........C.G.....T...C-.A..TT TGAGTATATAGAGTCTTGGTATAATAGAAAAAGAATACATAGTGCTATTGGCTATATTACACCTCAGCATTGTGAAGATATGGCTAAAAAATCTGCATAATTTGTTCGATAAAATGTGTCTACTATATTGACATAAATCCACATATGC 9097 28 100.0 39 ............................ TGATAGCGGTATAATAGATATACCTGACGAATTGTTAAA 9030 28 100.0 38 ............................ TTTACACAAGTTTTGTCTTTCTTCATGGTATGGGTGCC 8964 28 100.0 38 ............................ TAAAGTGAAATGACTAAAGAAGTGCCGTTAAAAAATAC 8898 28 92.9 120 .........................TG. CAATCCAAATTAGAAGAGATATTCCAAAGTTGAATATTAATAATAATATTTTATATGATTTAATCAGGGAAAATAAAAAATTACCTAGAATGGCATAGAGAGAAGGTTTTTGATAGAATA 8750 27 78.6 0 T....T..A..T....A..-........ | ========== ====== ====== ====== ============================ ==================================================================================================================================================== ================== 6 28 90.5 77 CTTTAATAGAACTAAAGTAGAATGTAAA # Left flank : AAAAGAACTCAAAGACTTATGAAAGAGCTAGGCATAAAATCCATTATCTACAAGAAATTCAAACCTATACCTTCAGGAAATAAAATAGATAGTAAGGAAAATATTCTAAATAGGGATTTCTCTACAAATAATATTAATCAAAAATGGGTTACTGATATTACATATATTTATACCATTAAAGATGGTTGGTGTTATCTCGCTTCAGTTATGGATCTTTATAGTAAAAAGATAGTAGGCCATGCTATGAGCAAAAATATTGATGCTGAGCTTGCTATAAAAGCTGTAGAGAATGCATATATCTCTCAAAACCCCAAAGACACATTAGTTCTTCATAGTGATCTTGGAAGCCAATATACAAGTTTAGAATTTAAAGAATATATATCAAATCTCCCTATAATACATTCCTTTAGTGGTAAGGGTAACCCCTATGATAATGCATGCATAGAGTCTTTTCATGCCTCACTAAAGAAAGAAGAAGTAAATCTTGTTAAGTATTATGA # Right flank : AAGAATGATATTTAATACATTTAAAATTGAGGAGTGTCACTTATACCATCTTAATCAAATGGTAAATTAAAATTTCTATATATTATGAAGATCTTTTTGGAAAAGACCGATGAAGAGTATCCGATAACCATCAATGGAATAATAAATAATTTAAAATCCTATGGAATTTCTGCTGAAAGAAAATCTGTTTATTCAGATATCGAGCTTTTAAGGAATTTTGGATTGAATATTATATGTATCAGAGAAAAAGCTAATTACTATTTTATCGGTTCTAGAAAATTTGAAATGCCTGAGTTAAAATTTTTAGTAGATACTGTTCAATCCTCTAGATTTATTACTTATAAAAAAAGTGAAGAACTGATTAAAAAATTGGGAAGTTATGTAGCATTCATCAGGCTAAGATTTTACAACATCAAGTAATTTATATCCGATATAATAAAGGCCATCAATGAGAGTATCTATTTATAATGTAGATGCCATACATAATGCTATTCAAGAGA # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-2.39, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAATAGAACTAAAGTAGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 10393-14088 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRS01000020.1 Garciella nitratireducens strain GHB3 Ga0255681_120, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10393 30 100.0 37 .............................. TTTAGCCCTGTAACAACATTATCAAGTCAAATAAATT 10460 30 100.0 37 .............................. TATAGCATTCTTCTTTTATATTTCCGCTTAAATCTTT 10527 30 100.0 38 .............................. ATTGTAGCAGGAAGTAGCATAATTGCAGCAGGTGCTAT 10595 30 100.0 37 .............................. ATATTGATGAATTAAAGAAACATACAGATAAGAAAAT 10662 30 100.0 36 .............................. TGTTGATTTGAATAGGGGGATTAGGTACATGAGAAA 10728 30 100.0 36 .............................. CAGTATCAGTAATGTCAATTACTTCTACTTCTTCTG 10794 30 100.0 39 .............................. TTAGATAGCAAGAAGAAACAACAAGACGATCTGCAAGAA 10863 30 100.0 37 .............................. CATCTTTCAGGATCTATTATAATTTCTTCTATAGTCT 10930 30 100.0 35 .............................. TCATTTCTGCTCCGTTCATTCCATGTAGATGATCG 10995 30 100.0 36 .............................. GAAAAAATAGTGCAGAGTAATTACAATGAAGATGAA 11061 30 100.0 37 .............................. GAGTTCACTGTAGAGTTAAAGGTGCTTGTTTCTACTC 11128 30 100.0 37 .............................. GGTCGCCCTAGGGTCACAAAATGGGGAACATATACAC 11195 30 100.0 39 .............................. AGGCAGATGCTAAAGCTTTAAATATTCCGTCATTGAATT 11264 30 100.0 37 .............................. AAAAAAGCAGAGCAACAAGTACAACAGCAGTTTGAAA 11331 30 100.0 36 .............................. TCATACATTTCAAAACGTTTTTCAGGTTTTAATCCT 11397 30 100.0 36 .............................. GAAACTGAAAAAATGAGAAGCAAATCAACAATATCT 11463 30 100.0 36 .............................. ATAGCGGAAAAAACAATGGAGATTAAAGATAATTGG 11529 30 100.0 37 .............................. CGCGATACTTGTTTGCTAACATCTTAAAATGTTCGCT 11596 30 100.0 37 .............................. TAAGAGGTGATTAAATGGAAAAAACAATAGAAATAGA 11663 30 100.0 37 .............................. AAGATTGACTACAATACACTTTGTAAACAACTTGATA 11730 30 100.0 35 .............................. CGACAACAAAGAAGGGCAAAGAGTTTATATAACAG 11795 30 100.0 38 .............................. GCGAAACTGTCATCTTCCTCCACCACCTTGACTTCTTT 11863 30 100.0 37 .............................. CATAAAAGGTTATTGTTTTATAGCTTTTGGTTACTAA 11930 30 100.0 37 .............................. CCTACGGTAGTGGAGACACGACTTACAGAGTAGCAAC 11997 30 100.0 38 .............................. CGATCCCTTTAAATCCAATAGAGGATGATAACTTCCCA 12065 30 100.0 37 .............................. GATGAAGCTTATAAGATTTTAAGTGACAAAGAGAAAA 12132 30 100.0 36 .............................. ATAAGAACTGTTAACGGTAAAAAAACACACTTTTCT 12198 30 100.0 36 .............................. GAATCAGCTGTTCCTTCTACAGCTTCTTTTAGCCTT 12264 30 100.0 38 .............................. GTACATATCATCACTAACTACATTACTTGTTGAATCTA 12332 30 100.0 38 .............................. TATATATGTTATTTTCTCCATTTACACACCCCATTCCA 12400 30 100.0 36 .............................. AGAACAGGAAATACGATACGATTCATATGAATTTAT 12466 30 100.0 35 .............................. AAAGGATATGGCTAAAGGAATAATTTTTGAGACAG 12531 30 100.0 37 .............................. TGTTAGAAAATGAGATCAATAAATTTCAACATTATGA 12598 30 100.0 37 .............................. CCTATGCTGATTTTGCACTTAATACTGCGATTGCCTC 12665 30 100.0 37 .............................. CAGAAAAAAGAGATTGAACAGACTATCAAAAATGAAA 12732 30 100.0 35 .............................. AAATTTGGGGAATATGTAGATGAGGGTTTTATAGA 12797 30 100.0 36 .............................. TATATCCATTTAGTCCAGAACACGCAAAAGCAATTG 12863 30 100.0 37 .............................. ATGATATTAAAAAATTAAAAGAATACGTAGAAGAGAG 12930 30 100.0 36 .............................. TACGGTAGGGGTAAGTATATCGATAGACTATCGATA 12996 30 100.0 37 .............................. GTTTAGCGTATGCAATATATAACTCTTTAAAATCTGT 13063 30 100.0 36 .............................. ATTTAGCAGTTTTAGAAAAACAAGAAGTTTTAACTT 13129 30 100.0 36 .............................. TGATGAAGTAGAGAACATATCTAGTATAGCTGAACT 13195 30 100.0 36 .............................. AGCTTGATCCTTCTTTGTAGCAACTGCGTATATTTC 13261 30 100.0 37 .............................. CAGTGCAGAAACAGAAAAGTACCAAAATCCTAATTTT 13328 30 100.0 37 .............................. CAAATAAGGCTACAGTAGAAGATTTAACCGCACTAAC 13395 30 100.0 36 .............................. TAGCAGCCCTTCTAAAATAATCTCCTATTGTAGTAC 13461 30 100.0 37 .............................. CTTTATGATATCAACCACAATAAAATATCACCTTTGA 13528 30 100.0 37 .............................. CTTCCGGCAGTTCTCGCCATATCGTTGTGCTGTCTTT 13595 30 100.0 35 .............................. CTAACTTTTCTAGTATGCTTATAATGTTTTTAGGT 13660 30 100.0 37 .............................. ACAATCTCCACCGATTCTTTTTTAGTGATGTGTAAAA 13727 30 100.0 37 .............................. TAGAATCAAGAGTTTCAAGTGCTGAGATCCAGATCGA 13794 30 100.0 36 .............................. GAAACCCTTATAATTCAAAGAATACTACCCACCCTG 13860 30 100.0 36 .............................. GAAAGGCATTATGATGATTACATAAATATAATTTAA 13926 30 100.0 36 .............................. CACTAGAAAACTATTTACTAGGAGAGAAAGAGGATT 13992 30 100.0 37 .............................. GTTCGTCCGTTATTATTTCTTTAAATTTATCATAAGA 14059 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 56 30 100.0 37 ATTTACATTCTACTTTAGTTCTATTAAAGG # Left flank : TCTTTTGCTTTCTTTTTTATTAAGATATTTATAATAGGAGCTTCTAGATACTTTCAGGACCTTACACATAAGTGTAATATCGTGGTTATCTTTATTATCATATATGAATTTAAATATACTACTTACTTCTTCGCGAATATGGCCATAGCCTTTTTTAATATTTCATTTTCCTCCTCGAGTCTTGCCATCTTCTTTAGCATTGCTTCATACTCTGCTGTAGTAACTGTTTCACTATTATTTATTTTTACAGGTTTAGCTTTTTTAACCCAGCCTGCTATAGTTGATTTTGATATGCCATATTCACTACTTAATTCGCCAAGAGATTTACCTGTATTATAAAGCTCTACTACAGTATCTTTAAACTCTTTTGTATATCTTTTTTTACCTTTTGTCATTGTGTAGACACATCCTTCCTTTATTATTTATATTTTATAGCGTTCGGATTTTTGTGTCTACAAAACTATACTAACACCAAACATCAAAAAATATTTTTTAGGACT # Right flank : GACTTGTTCCTGTAGATATTGATTTTACTGCTGTTAAACTCCTATTTCTGTCTATCAAACATTTTTTAATAATTCATTAATTAAAACCACATAAAAATTAGCACTATTTTTTATATAACTATTGATCTTATACAGTTTGTCTATCTTCATAGTTTTTTGCATTACTATAGATCGACAAGAATAATATTAAAAAAAATTAGATGTTTTATCATCTTCTATCGCTAAAAACTCTTTATTCAGCCATTTTTCACTTCTACTTTTAAATATAATAAGTGAATCTTTATCCTTTCTAATATAACCATTTAACTCAGATTTTAATTTCATCAAATCTAATTCTGTTAAATTCCCCTCAAACACAGACTTTTGTATATGAGTTAAATATTTTTTGCATATTTTAAAAGTATTCCTTGTAACTTTAGGACCTCTTTCATCTATTAATATATCATACATCAATATTACATACATAAATATAATCACCACCAAATTTTAAATCCTTCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTTTAGTTCTATTAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //