Array 1 125329-125561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJB01000003.1 Porphyromonas crevioricanis strain COT-253 OH2125 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 125329 36 100.0 31 .................................... CCAAGAACTGTCTTTTAAGGGCTTCGAGTAG 125396 36 100.0 29 .................................... TTAATCGCTCATTGTTTGAATAGTCTAAA 125461 36 100.0 29 .................................... TTTAGCTGCTCTACCTCGCAGCGAATTTC 125526 36 88.9 0 ..........................C.A...CA.. | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 97.2 30 GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Left flank : TTGTTTCATGCAGAAGAAATCTGTGAAGAAGTACCCTCAATTCCTTATTTAATATGCTTATTATCAGTTATGACATTAGCAATGACAAACTCAGAAGTCGTTTCTCAAAGATGTTGGTGAAGAATGGAGCCATTCGTTTGCAATATTCTGTGTACGAGGTTAATAATACCAACAGAATGCTTGAGAACTTAACTATAAAAATCGATGAGCAATTCGCGAGAAAATTTGAGGGAGGTGATGGTGTGATTATTTTTGACGTCTCTTCCGTAAAGTTGAAGAAATATGGCAATGCAATCCATCGAGATGCGGATGTCGTTTTTCTCTGAATACAGACCTGGGTCTGTATGTTTTATGTCAATTTGCTGTAATTCTCTGTTTATGAGAACTATAGGGGAGCTTTTCTAGCTTTTTTCTTAGGGAGAGGGGAGAAAGAGATCTTTGATATTATTCCATAAATAATTGGTGGATACCAAATTATATGCTACTTTCGTCAGGGCAGA # Right flank : TGCAATGGAAAGCTGAAAAGAAGTGCATTTTGGAAAGTTCTTAATACACCTATTTCTTTCGAAATCATAAAAAGAGGCTGTGTCAAAATTCAATTTTGACACAGCCTCTTTGTTTATTATGTTATGGGGAAGCAGTTTATTGCAAATCCATTTCGGAGATTAATCGTTTGCACCCGGCATACTTGTCGATAACAAAGAGCAAATAGCGGATGTCGCAGATGATACTGCGTTGATACTCCGGTAGGTATTCGATATCGCCTCCTACACCTTCCCAGTTGCGGTCGAAGTTAAGTCCGATCAGCTCTCCTTTTGAGTTGAAGACTGGGCTGCCCGAATTGCCTCCCGTGGTGTGAGTTGTGGCACAGAAATTCACCGGCATACGACCATCACTCATAGCATACTGCCCAAAGTCCTTATTGGCGTAGAGCTGTTTGAGCTTGTCAGAGACATTGTATTCCCAATTGTTCGGGTCTTCTTTTTCCATTACTCCCAAGAGGGTC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 54590-54363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJB01000013.1 Porphyromonas crevioricanis strain COT-253 OH2125 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 54589 29 100.0 37 ............................. CACGCCACGATCAACGAAAAGCCCATACTCCACAAAT 54523 29 100.0 37 ............................. CATTACGATTCATTCGTAGATGGTTCGTCTGATGCTT 54457 29 96.6 37 ..........A.................. CCTCTGGTTGTCTACCACAAGCTCGTAAGGCTTCTCA 54391 29 96.6 0 ..........A.................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 98.3 37 CTCTCAATCGCACCATATTGGAATTGAAA # Left flank : GCACTTTTATGCAAAAGAAGAGGGGCCGTGCATCCCTGCGAAGCCCCTCCGAACGTGAAAATTTGAGAAAATTGGATATGAATAAAAATTTGATAAAATAGCTACCTGTAAAGCAAGTCTATAATTCTACGCAAGCCGACAGCGAAGACAAACACCGCCATGCCAACAAGGCAGGCCGTCGGCGGCAAGAGAAGCCAATATACCGGCACCTGTTGCAGGCCTACCAGGCGACCTGCAACAAGCACAATCCATGCCAACACCCCTAAAAAGGCCAAGAAAACAAACAGGATTTTAACTCCTTCTTTTACTTTCGCCTTATTGATTTTTATGAATTTCATATTTGTATGTTTTTTATTATTCATCAAATGAAACATTGAGCAATCCGACAATTGCACTCTTTTTTACGCTTTCGATCTCGCAATCTCTTGCGTTGAAACAAAAGCGATCAAGCTCCTCTTTTGCCCTATCCAAGTCACTTGCTTGCACAAGAGCAAGCTCGC # Right flank : AATAGGAAACAGCTCAAATGCTACACAACAGTTTTGAAATAGTAAATCTCCTTACTGTTGGATAGCTTTACCGGTCTCTTGGGGAATAGAAGAAAAAGGGTATAAAGCCCAACAAAACCCCGACCATAGCATATACGAATATCTTCAGGATGGAGTCAAAACTGACACTATTGAGCAATGATTGCAGAAGCATTTCATCTATTGGAGCGGTATCCATGTAAACAATAAGGCTATCGAAAATAGCAAATAATGCTCCTATCAACCCTCCCAAGAATGGCACTAATGTGACAATATTATTCCTCGAGAATTTCATTAGAAAAATAATCCTTATAAATGCCCCAAGTTAATAAACGCATGGTTAATTCTACATAAGATTCGTATCAATTGGGATTGTAACTAAAGAGTTGACATCGGTCTTTAATTAAGACGATTTTGGGTTATCACCTTCCCAAATTAGCTCTTTGTCTCAATGTAGGGCATCGGTACAGAGCGAGATAGAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAA # Alternate repeat : CTCTCAATCGAACCATATTGGAATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 59129-57513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJB01000013.1 Porphyromonas crevioricanis strain COT-253 OH2125 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 59128 30 100.0 34 .............................. GACTTACCAGCCTCATGGCCAAGTGACATGTTTT 59064 30 100.0 37 .............................. ATCGAGTCTTGCAGCCGGGCGGTCGTCGCTTCGTCGA 58997 30 100.0 37 .............................. CTCTATGAGGGTGCTATCGCCCTTGCTGCGCACGACT 58930 30 100.0 35 .............................. CTTTTTGGCACAAAAAAGTGGCTATAAGTGGGGGA 58865 30 100.0 36 .............................. CTGGATTATTATTTCCCAACTTTTGATAACATTGGC 58799 30 100.0 35 .............................. GAACTATTGAAGTACGAGTATGTGATAAAATAAGA 58734 30 100.0 37 .............................. TTTTGTCTTTTATCGTGTCCCAGGGCAGGGGGAGCAG 58667 30 100.0 36 .............................. TCACTCACAGAGTCTGAATGAGATTGTCAATTCGTA 58601 30 100.0 36 .............................. GGCTCAGTGCTCAGCAGACCACCGTCGCTGCAAAAT 58535 30 100.0 36 .............................. TCTGACGAATCTCAGCAGAGAGTTTTTCAGGGTCGC 58469 30 100.0 37 .............................. GAGAAGAAATTCAACATATCCTTCTTCATATCATTAG 58402 30 100.0 37 .............................. ACACTGACAATGTTCCTACTACTTTTCGTAATTCGCT A [58386] 58334 30 100.0 35 .............................. TGTTCGTCACAAGTCTTATTAACTTGCGAAGAAGA 58269 30 100.0 36 .............................. GCGATTCGCACGATGGATGGAGTGTGGGGAGTTATG 58203 30 100.0 35 .............................. TTGATTGTCGTTGCTCCATACGTGAGAGACACGAT 58138 30 100.0 36 .............................. AGGGTTCGATTGAAAAAGATGATGGAGAACGTCGTT 58072 30 100.0 36 .............................. AAATTTTGGAGGGCTTGGGCATACGCATCAAGCTGA 58006 30 100.0 36 .............................. ATCTTTTTTGCAGGATGGAACAGGTAAAAAATTAAA 57940 30 100.0 37 .............................. GACTCCAAGACGGTCTTATACAGCTTCATGTCCTCTG 57873 30 100.0 37 .............................. ATGGCACAACCTGTTAAAAAACGGCTCCACCAGGGCA 57806 30 100.0 36 .............................. TCGTAAATCTCTGTGCCGTTCTTGTCTTTCAGGCCT 57740 30 100.0 35 .............................. TCTTGTTGTACTCAACAAGCATATCAGCAGTGTTA 57675 30 100.0 36 .............................. GCCCTAAATTGTTTGCAACCGTCTTGCGTACGCCCT 57609 30 100.0 37 .............................. GACTCCAAGACGGTCTTATACAGCTTCATGTCCTCTG 57542 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 100.0 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : AAAATGTATTGGTAATGTATATCATACTCGTATATGACATAGGAGAAAAGCGAGTTGGCAAAATGCTAAAGTTGTGTCGCAAATACCTAAACTGGATTCAGAACTCTGTTTTTGAAGGTGAGATATCCGAAGTCAAACTTCTCGAGCTGAAAGGATTAGCCCAAAAGCTAATGGACAAAAGAGAGGATAGTCTCATTATCTTTGCATCAAGACAAGAACGTTGGTTAGAAAAAGAAATAATCGGTAAGGAACGATGCTCCACTGATGTTTTTCTCTGATTAAACTCGGTTGGCTTGTCGAAGTAAGGGAAAGAAAAAAACAGTTCTACAAAAGAACCTTAGGCGATCTTTGAAATATTTGATTGTTAAGCAGATAACTAAGTCGTCATAGTCTCGGTAGTACTCTACAAATGCACTTCGACAACTTTAAGACACAAAAAACGAATTCTTCTGTAGCAAGAACCCTTTGTTAATAAGGGAAATAACTGGTATTTTTGACGG # Right flank : CTCTCAAAGAGGCAAGCACGCTGCTGCACGACGAAAGCGGACAAACAAAGAGCTTTGATCGCTTTTATCGAGACGTCGCAAAGCTCGACGCAACTTACAATCGCAACTACTTGCAAGCTGAGTATCTATACGCGACAGCAAGTGCCGAGAGCGCAGCACGCTGGACGGAGCAGATGCAAGACGCAGACGACTACGATCTCCAATATCGCACTGTCGGAGACAGCCGCGTGCGCGAAGAACACCGCGCACTCGACCTTGTGACTTTGCCCACTCGTCACGCCTTTTGGGAGACCTACTATCCCCCGAACGGCTGGAGGTGCCGCTGCACGGTTATACAAGTGAGGAAAGGCAAATACCCCACCACCGCGGACGCTGTTGCGCTGGAGGCAGGACAAGCAGCTATCAGCGACAAAAACAAGATTTTCAGAGGGAACCCCGGCCGGGAGGGCACTGTCTTTCCGGAAAATCATCCGTACTACGGAGAAGGCGGTTACGGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //