Array 1 21977-20026 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEQX01000002.1 Fusobacterium pseudoperiodonticum strain KCOM 1321 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21976 30 100.0 37 .............................. TGATGATGAAAAAAATAAAGAATTAAAATATGTTATT 21909 30 100.0 37 .............................. TATACAGAATTTATTCATAGAAATTTAAGATCTATTT 21842 30 100.0 36 .............................. TATTCTGTTGTAGATGACTTTTTTATAGCTAACTTA 21776 30 100.0 36 .............................. CTATTTACAGAAAGTGGTTATTTGATGTTAGTAAAA 21710 30 100.0 36 .............................. AATAACACTCTGTTAAACAATCTGTTAGCATCCATT 21644 30 100.0 37 .............................. AGATTTCTTTAATAAAATTCACAAAAACATTTACAAC 21577 30 100.0 34 .............................. GGAAAATCTTTTAATTCGATTACTCCATCTTTTG 21513 30 100.0 36 .............................. ACTGCAACTGAATTCATAAATAAGTTTACTTCTAAA 21447 30 100.0 35 .............................. AGCAATTCAAAATGGTGGGTTTAGCTTATCCTTAA 21382 30 100.0 37 .............................. GTATAAATTAGTATTAAAGTTGCATAAGTCATTTTTT 21315 30 100.0 37 .............................. TTGATAAAAACTTCTGTTACATCAGCATAACTTCTAT 21248 30 100.0 36 .............................. AATAATCAGATGTATAAATTACTACTAGATGGACAA 21182 30 100.0 35 .............................. ATCTATACTCAAAACCTAATCTATTTAATTCGTCA 21117 30 100.0 36 .............................. TTCTATATTCGTGAGATGAAAAAATAAAATTGATAT 21051 30 100.0 37 .............................. AACTTTTTCCTTGCATTTATAATGCTGTTTCTTATTT 20984 30 100.0 36 .............................. ATGTAGATTTGAAAGACACAAAACTTAAAAAAGAAA 20918 30 100.0 37 .............................. GATAGTTTAGTAGAAGTAGATGCAAATGGTCGTAGCA 20851 30 100.0 35 .............................. ACAGAAAAAACTGTATTCTTGAAAGTTGAAATTCA 20786 30 96.7 38 ...........................G.. TTTTCTGCCCTGTACTGTATCCACTCTTTTATTAACTC 20718 30 100.0 36 .............................. ATTTAAACCTATTCTAAAACTTTCATCATCTTCACG 20652 30 100.0 35 .............................. TCTAAATTGGCTATTAAGAAATTATCCACAACAGA 20587 30 100.0 37 .............................. AGAACCAATTACAATTATAAATTTGATTTTCATTTTA 20520 30 100.0 36 .............................. CAAGATGAAGAAGGATATGCTTTTATAGAGGAGACA 20454 30 100.0 37 .............................. TATTTATACCTGTGTCATTGAACTTAGAGTATAAATA 20387 30 100.0 36 .............................. GCACATTTAAATTTTAGTGTAGAATTTAGATATAAC 20321 30 100.0 37 .............................. AGTTGAAATAATAATATTTTGTATAAATCTTGGGATT 20254 30 100.0 36 .............................. GAGGGATTAAAAGATTACGAAAATACTGTAAATATA 20188 30 100.0 38 .............................. AATGATATCAAGGTTAATCCTTTAGGTCTTATAATTAA 20120 30 93.3 35 ...T...............A.......... GCACAAAAAGTACGTGAGGGTGGATGGGATAGAGA 20055 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.6 36 CTTAAAGTATTATCATATTGGAATTTAAAT # Left flank : AGCTTTTCAAATGTGGTGGTGATAAAATGTATGTTGTTGCAGTATATGATATATCATTGGATGAAAAAGGTAATCGTAATTGGAGAAAAGTTTTTGGCATTTGTAAAAGATATCTTCATCATATTCAGAAGTCTGTTTTTGAAGGAGAATTGTCTGAAGTAGATATTCAAAGATTAAAATATGAAGTTTCGAAATATATTAGAAATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAGATGGATGGAAAAAGAAATGTTAGGATTACAAGAAGATAAAACAGATAATTTTTTATAAAATTTTATTGTCTACCTTAGATAATGTAAAATTCTCAGTACTTCGACAAATATTATAAAAGTATTTATATTAAAAGAATTTTTTTAATATTTTAAATTCTAAAAATATTTAAGTTTTTTATTTTTTTATAAAAGGTTCAGATTGACAAAAGATAGTAAAAAAAGTATTATATTAGAGTGAGATTTATAGCCTCGG # Right flank : TCAAAAAATTAAAAAAATATGAACAAAATAAATTTTATCAATTTATTTCAAAAAAATAAAAATTTTCCTTTTATTTTTTTGAAAAAAGTTGTATTATATGTATTGGATGATTTTTAACAAAATTATACTAGTTAAATATACTAAAAAAATAAAAAAGGGGTAGATATTAAATGAAAATTGTAGTAGTAGGTGCAAACCATGCGGGAACGGCTTGTATTAACACAATGTTAGACAACTATAAAGGAAATGAAGTTGTTGTATTTGATAGTAACTCAAATATTAGTTTCCTAGGATGTGGAATGGCTCTTTGGATAGGTGGACAAATAGCAGGTTCAGATGGATTATTTTATTCTTCAAAAGAAAAATTAGAAGCAAAAGGTGCTAAAATCCATATGGAAACAGGTGTTACAAATATCGATTTCGATAAAAAAATTGTGTATGCTACTGGAAAAGACGGTAAAAAGTATGAAGAAAGCTATGATAAACTAGTTTTATCTACA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAAAGTATTATCATATTGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 123764-124255 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEQX01000001.1 Fusobacterium pseudoperiodonticum strain KCOM 1321 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 123764 36 88.9 37 AA.A...................T............ ATAAAGAAAATTTTGTTAAACAGAAAAAATTGATAAA 123837 36 94.4 40 .....T..................G........... CAAAAGCCGATTTTGAGAAAAAAAGAAAAGAAATACATTT 123913 36 100.0 41 .................................... TATTATAGTGTAGTAATTCATGATAAAGAATCTCATAAAAA 123990 36 94.4 39 ..............G............T........ AGAAAATGACATTGTTGGTTATAACACTTCTTATTTAAA 124065 36 100.0 40 .................................... AATCTAAAAAGTATGATCTACAGGATAGAATTCTATGGGA 124141 36 97.2 43 ....T............................... TGGTTAATATTTATTTTTATTTTATATATTGAAAGGTAGGTGT 124220 35 86.1 0 ...............T.A.....-.....C.T.... | T [124240] ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 94.4 40 GTTTCCGTCTCCTTACGGAGTATCATTCATTCTTAT # Left flank : GAGTTGAAACTTCATCTTTTGGTCTAGACCAATTTTCAGTTGAAAAGGCATAGACAGTTAAATATTTTACACCTATTTCTGTAAAATACTCCAAGGCTCTTCTTAACGATTTTGCACCTTCCATATGTCCAAAACTTCTAGCTAAACCTCTTTTCTTTGCCCATCTTCCATTACCATCCATTATTATGGCAATATGTTGGGGTATATTCTTTTCCATTTTATCACCTCATTAACTATAACATTTTAACATATAAAATAAAATTTTGTTAACTAAATTTATTTTTATTTAAAAAATAATAAAGAGAATCTTTTTAAGATTTTTATTCTCAAAAAAATTCTCTTATCCATAAAATTCAAAAGGCTTAGGAAAATTATTCTCATCTTTAAATGTTAAAACATTTTTACTTTTAACTTTCATTTCAATCACCTCATTAACTACTATAGTTTAACATATAAATCAATTTTTTTATAGAAGTTTAGATTTCTTTAATTATGGTAAC # Right flank : TACTATATTCAAAAAAGAATTGTATCATAATAAATTTTTAGAATATTACCATCTGGTATTTTTATTTTGAGAATTTTTTGATTTATTTAAAATAAAAGTATATTTAACTCCTCATTTTTTAGATATTATTCAATTGCTATCTTTTATCTAATTTTTCAAAAAATAAAGGCTATGTAGAACAAAAAAAGAATTTTAAATTTTAAAAAAAATTCTCTTATTCATAAAAATTCAAAAGGCTCTGTAAGATTATTCTCATTCTAAAAAGTTAAAACATTTCCACTTTTAACTTCCATTTCATAACCTCATTAACTATTACAGTTTAACATATAAATCAATTTTTATAGAAGTTTAGATTACTTAATTATGGTAACAATACCGTCTCCTTACGGAGTATCATTCATTCTTATGAGGCATCAAACTTGATATACGAATATAAGTATATCATTGGATTTCCGTCTCCTTACGGAGTATCATTCATTCTTATGAAAAAGCACAAAAGG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCTCCTTACGGAGTATCATTCATTCTTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 129979-124626 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEQX01000001.1 Fusobacterium pseudoperiodonticum strain KCOM 1321 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 129978 36 100.0 45 .................................... ATTTACATCAGAAAATTGACAACTGATGTAGGTAAAACTATTCAA 129897 36 100.0 46 .................................... AAGTTTGCTATCATTGTAAATGTCAAGGTGAGTAACTCACCAGTGC 129815 36 100.0 41 .................................... CCTGTATTTATATTAATATTTACATATTTATTAAATATTAA 129738 36 100.0 35 .................................... CCTTATTTTCTATAATGTCTAATACTTCTTTTAAA 129667 36 100.0 38 .................................... TTTTTAATTAATTATAACCATTTTTACCACTCACTAAA 129593 36 100.0 41 .................................... TAAAATACTCAAGTAAATCACTAGCATCACCTTATTTTTTA 129516 36 100.0 39 .................................... TATAAAACATCTTTTAAATCTTTATGATTAAAATCTTTT 129441 36 100.0 39 .................................... TAAAGAATATATAAATAACTATGATTATGCTTAAATATA 129366 36 100.0 40 .................................... TGTTTTTTCATAATTATATCCTCCTATATATTTTTATTTT 129290 36 100.0 42 .................................... AATTAAAAAGGGAGTGATTTTATGGTATGGAATTATAAACAA 129212 36 100.0 40 .................................... AATAATTTCACCGTTAAATGTATTAACATTGCAATACACT 129136 36 100.0 42 .................................... AGGTTGTAAAATGTTAGATATTAAAAGAAATGGAATTAATGG 129058 36 100.0 38 .................................... ACAGGTCCGAAAGTTGTATCGTCTGTTGTGTTACTAAA 128984 36 100.0 39 .................................... AATTAAAAATTATATAACATTCAAGGGGGATATAATTTT 128909 36 100.0 35 .................................... TTATATGGTATGGAATTATAAACAATTAGCAAAAA 128838 36 100.0 42 .................................... AAGAGAAAATATAGAAAATATAATAAAAAGATTGAATTACAT 128760 36 100.0 42 .................................... TCTAATATTTCTGCTTTTCTTATCATATTTACTACCTCCTAA 128682 36 100.0 42 .................................... TTATCTTTAATACTTTATATGTAGAATGTTTACCATAATTGT 128604 36 100.0 37 .................................... TAACAAGGTGTTTGGCATACGCTGGTTTAGTAGCTGA 128531 36 100.0 42 .................................... TCTTGTTTTGAATGTTTCACTAGGCTTTTAAAATATTCTTAA 128453 36 100.0 38 .................................... ATACATCGATATAGATGTAAAAAATGAAATTGTTATAA 128379 36 100.0 42 .................................... AAGCTTTAAAGTCAAGCCGTTTCATTGATTTTCTATACTATA 128301 36 100.0 40 .................................... TTTCTATATCACTCACTGCTGCATTAATTTTATCCATTAT 128225 36 100.0 37 .................................... TCGTATTCAAATTCTACACCTTTGATAATGTATGTTT 128152 36 100.0 49 .................................... CTTCTTCAAGTCTATCAAAGTGCATTACTACATCAAAACCTTTCATATA 128067 36 100.0 36 .................................... CATTATAATTTGTAAGAATGTTATTTTCATTTTAAA 127995 36 100.0 38 .................................... TCACCGTTAACCGTCTATATGTTAACGATTTTTTTAAA 127921 36 100.0 41 .................................... ATGCGAATTAGCTTATCTATATAAAAACGAGTATATAGCCG 127844 36 100.0 40 .................................... TTTCTGTTTTTTTTCAGTATACAGAACAAGTACTTTTTAT 127768 36 100.0 40 .................................... CCTATAAATATATACTTTCGTTATTGGCTATATCAAATAT 127692 36 100.0 36 .................................... AAATTCAAGGTTTTCAAACCTTTTCAATTAGTTTTT 127620 36 100.0 43 .................................... TTATCTGCTAAATAAAATCCACCGAATGCGTCATTTTTTACAA 127541 36 100.0 38 .................................... TAATTTAATTCTAATATACTTGTTTTCAATTTTTGTTT 127467 36 100.0 44 .................................... GTACTAATATATCTAAGAAATTTCCTCCTCTGATAATATCATTA 127387 36 100.0 36 .................................... AAATTCAAGGTTTTCAAACCTTTTCAATTAGTTTTT 127315 36 100.0 44 .................................... TTAAAGTTATGCAAATCCTCTTATGGTTTTTGTTTACTTAGTGC 127235 36 100.0 39 .................................... TGATTTATAACATACATAACCAATTGCCATTATTCCTAA 127160 36 100.0 43 .................................... GGACATCAGGTAGTCCTAATTGAAATACCTGAAAACGTCATTA 127081 36 100.0 41 .................................... CTGTTTGTCAAGAAAAATTTTTTTATTCTATAGATTTTTTT 127004 36 100.0 40 .................................... CTTGCAAGTCTTAAAAAACATTTCTAATTCTTTTATATTA 126928 36 100.0 40 .................................... TATTCTATCCCACCTATACCATTAATTTTAAACTCTTTCA 126852 36 100.0 41 .................................... TCATAACGTTTCTCTTGTGTATATTGGAATACTATATTAAG 126775 36 100.0 43 .................................... TAGTCTTTTTGTCATTATCTTTTAATTGTTCAATTGCATCCTC 126696 36 100.0 38 .................................... CTGCTAATGTAACATGATTAATACTTGTAATATCCTTA 126622 36 100.0 40 .................................... CCAAATAACATCGGTGTATATTCGTTATTATCGAATTCTA 126546 36 100.0 37 .................................... CTATTACAATAGATAGCATTGTCAAATGTAATATTAT 126473 36 100.0 42 .................................... TATCACTTGTATCAAGCCAACCACCGATATATCCATCTATTT 126395 36 100.0 37 .................................... TCTGTATAAAAATATCCGTCCATTTCATATTTATCAG 126322 36 100.0 41 .................................... TAGATATTTTTTTTTGAATGTCCATTTTTTCAAGCTTGAGC 126245 36 100.0 39 .................................... TTTTCTGGGACTTTAAAGCGTTGCTTTTTGTGATGTTGC 126170 36 100.0 35 .................................... TTAAATTTCTTTTTTATCTAATAAAACGGCTTTAA 126099 36 100.0 37 .................................... TAAAATAGTATCTATTTCAATATTTAAGATACCATTT 126026 36 100.0 39 .................................... CAAAAAGTTAATTTTGAACCATCTTTAAAAGTTAATTTA 125951 36 100.0 36 .................................... ATAATATCTACCTACTTTCTTTGCATACGATTTAAA 125879 36 100.0 41 .................................... TTTCTTTTTAAAATTTTATTATAGTATTATTAGATATAATA 125802 36 100.0 40 .................................... TAGATATGTCTACCTAGTTTATAAGTTGCTTTAAATTTAT 125726 36 100.0 41 .................................... AATATTCCTCCTCCAATTCTCTTACTTCTCTTATAAAGTCT 125649 36 100.0 43 .................................... GAATTCAGTTTTTTCTAATAATACAGCTTTAAACTCCAATAAA 125570 36 100.0 44 .................................... TTGCAATACACTCCATAAATTAACCATTCATTTTTACTTAGTTT 125490 36 100.0 41 .................................... TGGAAATAGATTCTATGCTAATATCTATGCAAAATCAGATA 125413 36 100.0 39 .................................... TAGACAAATATTCGTCTAACATATAATCATCGTAATAAT 125338 36 97.2 38 ........A........................... AAGATTTTATCAAAAATTTATATCTCCATTATTCCCAG 125264 36 100.0 42 .................................... TAAAATAGCTATTCCTTTAGATAGTGAGTCTGTAGATGACTT 125186 36 100.0 42 .................................... TAAAATAGCTATTCCTTTAGATAGTGAGTCTGTAGATGACTT 125108 36 100.0 40 .................................... GCTATTTATTCATTTTCTAAAGTTCAATCAAGCTATTTTC 125032 36 100.0 39 .................................... TAATTTCTTATGTGGTGTTATAGTACAGTTTGATTTGAA 124957 36 100.0 37 .................................... TCACAGGTTAATGTTTCAAACCTTATTATAATTGGAT 124884 36 100.0 37 .................................... CTATTTATAGTATCTATATTCAAATTTGATTTTTCTT 124811 36 100.0 37 .................................... TTTCTTTACCAATATCTTTAACCTTTTGTGCTTTTTC 124738 36 100.0 41 .................................... CCAATGATATACTTATATTCGTATATCAAGTTTGATGCCTC 124661 36 94.4 0 ................................T.T. | ========== ====== ====== ====== ==================================== ================================================= ================== 71 36 99.9 40 ATAAGAATGAATGATACTCCGTAAGGAGACGGAAAT # Left flank : GATATTATTTCTAATAAAAGAAGAATACAATTATCAAAACTTTTAAGTGCTTTTGGTTTTAGAATACAGAGATCAGCTTTTGAATGTTTGTTGACAAGAGAAAAATATAAGTTACTTGTTGAAAAAATTAATAGATATGCCAAAGCTGAAGATTTAATAAGAATTTATCGTTTAAATCAAAATGTAGTAACAGAAATATATGGTGAAAAATTAGAAGCAGAAAATGAAAATAAAGCTTATTATTTTTTCTAAAAATATAGAATCTCTCAACTTAGATTGGGAGATTTTTTATTTGTTGAAAATTTAAATAAAACATGTTAGTATGTAACTACACTGAGAGAAATCCTAAGGTTATAAAAAGATATTAGTTAGACGATATGTAAAAAATGAGGAGTTAAAGATGCTTTTAACTGAAATAAACAAAAAAATTTCAAAAATAAAAATATCACACGATAACATTCTAAAAACATATTGCAATAAAAGACTTTTTTGACCATAGG # Right flank : GTTACCATAATTAAGTAATCTAAACTTCTATAAAAATTGATTTATATGTTAAACTGTAATAGTTAATGAGGTTATGAAATGGAAGTTAAAAGTGGAAATGTTTTAACTTTTTAGAATGAGAATAATCTTACAGAGCCTTTTGAATTTTTATGAATAAGAGAATTTTTTTTAAAATTTAAAATTCTTTTTTTGTTCTACATAGCCTTTATTTTTTGAAAAATTAGATAAAAGATAGCAATTGAATAATATCTAAAAAATGAGGAGTTAAATATACTTTTATTTTAAATAAATCAAAAAATTCTCAAAATAAAAATACCAGATGGTAATATTCTAAAAATTTATTATGATACAATTCTTTTTTGAATATAGTATAAAAGTGAATATAACTTCATAAGGAGACGGAAACACACCTACCTTTCAATATATAAAATAAAAATAAATATTAACCAATAAGAATGAATGATACTCCGTAAGGAGACGAAAACTCCCATAGAATTCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAATGAATGATACTCCGTAAGGAGACGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //