Array 1 258-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGBQ010000138.1 Acidianus sp. RZ1 strain DSM 29099 Contig_206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 257 25 100.0 41 ......................... TTTTGCTGTGTTTGAAGATACGAACTGAAGAACGTAACCAT 191 25 100.0 37 ......................... ATATTTTTCTCCATACCAATTCTGCGAAAAGTAACTT 129 25 100.0 41 ......................... GGCCAAGGGGGGAGAAAGATTTATAAATTTAAAAATGGGAG 63 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 4 25 100.0 40 GTTGCATCCTAGAAGGAATTGAAAG # Left flank : CTAGAAGGAATTGAAAGCGTCATCTAGATAGAGTACCCCTTGGAAGGTACCCTCT # Right flank : GTTTTGCTGTGTTTGAAGATACGAACTGAAGAACGTAAC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 214-498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGBQ010000121.1 Acidianus sp. RZ1 strain DSM 29099 Contig_183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 214 25 100.0 40 ......................... TCGCGTTCGGGCTAGCAATTGGTGGCGTGATAGCAGCTGT 279 25 100.0 41 ......................... ATTCTCTTTCTAGTATGTACTATTTTTTATCAATAATTTTT 345 25 100.0 39 ......................... AGTGATGGATACACATTGCAAGTCACGACAGTATTACCG 409 25 96.0 40 ...............A......... ACAGTGTGTCAGCTAGCACACTATATCCGTTCATCAGTGA 474 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 5 25 99.2 40 GTTGCATCCTAAAAGGAATTGAAAG # Left flank : AAAATGCGAGTCTCAATGCGACTAGTGCGTATTACAAAGAGGGGGGTTAACATTTATAAACGTCAAGAGGGTTTCAATTTAATTAAGAGTAGTTGCGACTGAAACGACGTTAGATCTTTACAACAAATTTGGTCGCATGATGGGTTGACTAAAACAGATAAAAATAAATAAGAGAAAGGGAGAAATGAAGATAAGTAGTATAAAAATACATCAG # Right flank : CTTTGTTATACTCTATGTCAAGGAATAACCTTGGCTCAGGTTGCATCCTAAAA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 912-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGBQ010000139.1 Acidianus sp. RZ1 strain DSM 29099 Contig_209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 911 25 100.0 44 ......................... CGAGGAGTTGAGAGAGTAGTCCGTCATCCAAAGTCAAGAACTAC 842 25 96.0 44 ..G...................... CGAGGAGTTGAGAGAGTAGTCCGTCATCCAAAGTCAAGAACTAC 773 25 96.0 41 ..G...................... TAGCACGTACTTGCAGAGGTTAGCTAATGAAGGGTTTATCG 707 25 96.0 40 ......................C.. TATTTCGCATGGGCTAAGGCAAACCTCTGCCACTTACCGT 642 25 96.0 40 .A....................... TATTTCGCATGGGCTAAGGCAAACCTCTGCCACTTACCGT 577 25 100.0 40 ......................... TAGCACGTACTTGCAGAGGTTAGCTATGAAGGGTTTATCG 512 25 88.0 40 ............G...T....C... TATTTCGCATGGGCTAAGGCAAACCACTGCCACTTACCGT 447 25 96.0 40 ........G................ GTAACAATAACGTTAGATCTCCTAAAGTACCTTGCAGCAT 382 25 100.0 40 ......................... GGGATTAGGAATGGGACGATGTCTATCATCATGATAACCG 317 25 88.0 38 ........A............T.T. CATTTCAGGTCTTCGCAGTTGCGTAAGGTGGAATAGCT 254 25 96.0 39 ......G.................. CTGCAATCTTATGGGCGTCTTCTTCGTCCATGTTTTTTA 190 25 100.0 39 ......................... CTGCAATCTTATGGGCGTCTTCTTCGTCCATGTTTTTTA 126 25 92.0 37 ............T.........T.. TTCGGTAGCGCAATATAACCATCAGATCACTATTAAT 64 25 92.0 0 .G.........G............. | ========== ====== ====== ====== ========================= ============================================ ================== 14 25 95.4 40 GTTGCATCCTAAAAGGAATTGAAAG # Left flank : TCCTAAAAGGAATTGAAAGAAGACATATCGTCTGTGTCTCGGCGTTTCCTCGCCGTTATA # Right flank : GAACCTAAGGCTCCACTGATGGGAATTTGCAGACCTTATC # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //