Array 1 35175-39408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQH010000177.1 Xanthomonas melonis strain CaNP1D contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35175 28 100.0 33 ............................ GCAAGGAATGGGACGAGCGCCTAGCGGTCTACA 35236 28 100.0 32 ............................ GAATCGCCCGAGGTCGCGCGCTGGTTCGTCGA 35296 28 100.0 32 ............................ AGCTGCTGGCAAAAGAGTCGGCGGACCCATCG 35356 28 100.0 32 ............................ ACCTGGTTCGCCCATCGAACCGGCGCGCTCCT 35416 28 100.0 32 ............................ AGCAGATCGCCCAGGGTCTGCGTGGAAATGCG 35476 28 100.0 32 ............................ TTCACGGCGGCATGCGCGTCAGGCATGCCCTT 35536 28 100.0 32 ............................ TACGCCGCAACCGGGAGGCGCTGATATGGCAC 35596 28 100.0 32 ............................ TGCCGAACACCTACAACCTGAGTGGGCCATTC 35656 28 100.0 32 ............................ CATGGCGGTTCGCCCGCCTTTCCGCACGTCTC 35716 28 100.0 32 ............................ TGGCCGAAGGATCCAAGCCGTTCCACGCAGAG 35776 28 100.0 32 ............................ TAAGAGCGGGCAGCATTTCGTCAAGTTCCATG 35836 28 100.0 32 ............................ TCCACGCGAGCGTTCTTTCCGGACCTGAGCAT 35896 28 100.0 32 ............................ ATGCTGCTGACCAAGCCGGTGCTGAACCTGCC 35956 28 100.0 32 ............................ GCACGGCGAGCTGATCGAAACGTTCGAGGCGC 36016 28 100.0 33 ............................ CAGAAGGGCGGCGAGGATCACCAGATTGGTGGC 36077 28 100.0 32 ............................ ACGACGCCGTGAGGGAGCATCACGTCGTAGTA 36137 28 100.0 32 ............................ TCGAAGCCACGCGCGTTGTCGTTAAACGCTGC 36197 28 100.0 32 ............................ TCAACGCAGGCACTGGCGCGCTCAACCAGCTG 36257 28 100.0 33 ............................ CTCCGGGTTCTTGAGGTAGAGCGCGTGCTGCTT 36318 28 100.0 32 ............................ AGCAGCAGGCCGAGGTCGTGCATGCCCTGCAC 36378 28 100.0 32 ............................ TCTGCTCGGTGAAGTGCGGATCGGACAGGCGC 36438 28 100.0 33 ............................ TGAAGGTTGGCCCGGCCGCCGCCTTGCTGCTGG 36499 28 100.0 32 ............................ GGTCACCTGCTCGTCGCTGTCCACCCGCACCC 36559 28 100.0 32 ............................ TGCAGAGGCGTTTCCGGCGCCTCCAGAGGCCG 36619 28 100.0 32 ............................ GCCGACATCGCCAAGCAGACCGCCGAAGCCGA 36679 28 100.0 32 ............................ GAGAACGGGTTGTGCACCCGTTTGATACGGAT 36739 28 100.0 32 ............................ TGGCTTCGTTTGAAGCCGAGAACCCTGGCAAG 36799 28 100.0 32 ............................ GCCCATTGAAGTTGGCAAGCGCAACGATCAGC 36859 28 100.0 32 ............................ AGGACGCATATCTGGAGGCCCTCACCGATTGG 36919 28 100.0 32 ............................ GTTTGCATCTCGCCGGTCCACACGACGGTATT 36979 28 100.0 32 ............................ TTCCGGAGGCGCCGATCAATGGCTATCCGTAC 37039 28 100.0 32 ............................ ACCTTGCAATGGCTCCAAAGCTCGGGAACCGC 37099 28 100.0 32 ............................ AGTAGGGCGCCGATCAACGCCAGCGGCACGGC 37159 28 100.0 33 ............................ CTGGCGGCGAGCATGGCTCCCCAAGCGCGGGCC 37220 28 100.0 32 ............................ TGATCGAAGAACGCCATTGCTGGTGCACACCC 37280 28 100.0 32 ............................ TGTGGGAGGCATATAGCCTGTTTCGCCGCATG 37340 28 100.0 32 ............................ AACCAGCTGAACGCGGGCGACACGATTTTCGG 37400 28 100.0 32 ............................ ATACCGTGGTGGCAAAGACTCCACGAACAGCA 37460 28 100.0 32 ............................ ACCCACCCCCATCCGGCAGCGGCGAAGGACGG 37520 28 100.0 32 ............................ ATGGCCAGCTGCTGCCGGAGCAGATCCTTGGC 37580 28 100.0 32 ............................ TGGCTGTGCGCGTCAGTGCTGTTCCTGGCGGC 37640 28 100.0 32 ............................ ACGATCGGCGACGGCCCGGAGGCTGCGTGATG 37700 28 100.0 32 ............................ ATGGCTCGGCCAGATCCTGGATACGCTTGCCC 37760 28 100.0 32 ............................ GTCCAGAAGGGCGGCTCCGGCAAGACAACGAT 37820 28 100.0 32 ............................ TGCAATGGCATGTGCAAGGTTCTGTGGGCCGC 37880 28 100.0 31 ............................ TGGGCGCGACCAAGTGGTGGAACGCAATGAC 37939 28 100.0 32 ............................ TGGATCCAGCGCGTCGGCGCGCGGCATGGCTT 37999 28 100.0 32 ............................ TTCTCCTGGGAAGACGGTAAGCACAAGGTCTA 38059 28 100.0 32 ............................ AGCGTCTCCGCCCCGCTGACGATCTCCATCGT 38119 28 100.0 32 ............................ TACGTCACAGCTGATGCGCTGGATGCGATCGA 38179 28 100.0 33 ............................ TTCACGGTCTCGCGGCCCGAATCATCCATGTCC 38240 28 100.0 33 ............................ TGTCAAGAAGCGGCCGCACACCTAATGGTATTC 38301 28 100.0 32 ............................ TCCACAGTTCGACGCCCGTGGTATCCCGCACG 38361 28 96.4 32 T........................... TGGGCAATCTGAAAGACATGCGTGCTAGTCTC 38421 28 96.4 32 T........................... AATTCGACGCCCGCACGCTGAAATTCCAGGAT 38481 28 96.4 32 T........................... CATCGTCATCTGCAACTCCAAGACGGCTTGAG 38541 28 96.4 32 T........................... GTGGAACAGGGCGAAGCTGTCGCGGTCATCCT 38601 28 96.4 32 T........................... ACCGGCGGGTTCCCTGGAAAGGATCATGACTA 38661 28 96.4 32 T........................... TGATCGATGATATCCATCAATCCACCGCCTTC 38721 28 100.0 32 ............................ TGGTGCGGCAGCGGCACTGTGTGCGGCATCTG 38781 28 100.0 32 ............................ TCCACGGACCGCGCGAAGCCCGCGCGGCCGCC 38841 28 100.0 32 ............................ AGGAAGCCAGCCGTATCGCCGAGCGCTGCGCC 38901 28 100.0 32 ............................ GCGATGAAGATGAAGGCGCGCGGGCTAGAGTA 38961 28 100.0 32 ............................ TGCATGCGTCTTGTCATAGCAGAGCCCATCGG 39021 28 100.0 32 ............................ GCCCTGCAATGCAACATGCATATTATTTTCTG 39081 28 100.0 32 ............................ CTTCAGGAAGTCGCAGCCGGCCTCATCGTGGG 39141 28 100.0 32 ............................ AGCGCAACATCCTCCCGGCCTGGGGTCCGCAT 39201 28 96.4 32 ....................T....... TTTGCACGACTCAAGTAGATCGCGGCATTACT 39261 28 100.0 32 ............................ AGATCGTCTGGCACAGGTTTGAGGGCGTGAAG 39321 28 100.0 32 ............................ TTGGCCAGCGCCGCACTGCCGCGCACCGTTGC 39381 28 92.9 0 ...........T...............C | ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.5 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CATTGCAGACATTGATGGCCCCGCCCTGGCTGCAAGGCATGCAGGATCATTTGACTGTATCGGACATCTACCCCACCCCCGCTGGCGTGCAGCATCGGCGAGTGATGCGGGTACAGGCCAAGAGCAGCCCATCACGCCTACGCCGCAGGGCGATGCGACGCCACGGACTGGATGCAGAAGCGGCGCTGCAACGCATCCCGGATTCGGCCTCCGAACGATTGCAGCTGCCCTTCGTGGTTCTGGGTAGCCGCAGCACAGGGCAACCCTCGTTCCCGCTCTTCATTCGCCAGGGTCCATTGTCGTCCACTCCAGTGCCGGGCACCTTCAACAGCTACGGCCTGAGCCAGGACGCAACCGTTCCCTGGTTCTGACCCTTTTTTCCTGCGCAGAACACAGCTCTTAAGAATCAACAACTTGGCGGGCCTCCCAAGATAAGGGGGCCCGTTTCTTTTTTGGGGATCTTCCCAGTACCATCAACAGCTTGCGTCATTTTTTGTCTT # Right flank : CTGCGGGTTGTCGACTTTGCTGTCGCCGCCGATTCAAGTCTGCCCCATTCCGGCTGGATCGCCGAAGTAAATCTGACCCTCCCGGGTTCAATCGCCTGGGCATACCTGCGGTGTCGCATGGCACTGTCGATGCAGTGCATACCGGCTGCGCAACTGCGGCGTGCGATGCGGCACTACAGGCAGACGATGGGTCGTGCTGCGGCGCTGCCGGATACCCATCACTCGCGTCCGTAAACCCCCAGAAACATCGCCACCGCCGATTCGGCCACCTGTGCCTGTTGCTCGGCCGACAAGGGGGACTGGCCGAAGGCCAGCTGCGGCCAGAATGCGAATCCCTTGATCAGCGATTGCAGCTGTTGCGAGGCGAATTCGGCGTCCATCGGCGCCAGGCGGCCGTCGGCCAGTGCCGCGCGCAGCCAGGTGGTGGTGCCTTCTTCCTTGCTGCCCAGTTGCGACAGCAGTGCGCGCGCGCGTTCGGGCGAGTGGATGCCTTCGGCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //