Array 1 32342-31709 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATKB01000130.1 Fusobacterium nucleatum subsp. vincentii ChDC F8 Contig130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32341 36 100.0 30 .................................... TCCTCATTTCCTTTGACGTCTATTTTTCTA 32275 36 100.0 30 .................................... AAAATAAATTAATAACAAGAGGTATTATGT 32209 36 100.0 30 .................................... AACAAGGTTTTTATGCACAGTATAAAAGAA 32143 36 100.0 30 .................................... AAATAGATTTGATGATGCTATTGGATTAGA 32077 36 100.0 31 .................................... TAAATAATGTAGCTACTCCAAATATATTTAA 32010 36 100.0 30 .................................... TGTTTTTTCTTTTCTCTGTGGCATTATGTT 31944 36 100.0 30 .................................... TAGAGAAATTATGAAAATTAAAACTGCTTA 31878 36 100.0 30 .................................... GTAAATTATCTTTTCAAATCCATTCAATTA 31812 36 100.0 30 .................................... AATAATTCCTGTTTATTTGGTAATGTTTGT 31746 36 83.3 0 ..................C.....A.T....T..CT | GA [31714] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.3 30 GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Left flank : ATAGATTCAAAACTTCTGAGAAGACATTTGAAAGAGAAATTT # Right flank : TTTTTCTATTTTAAAATAACAAAAAAGAGGTATTTGAAAAATAACTATTTAAAGTAGATTAAAATAATAGTAAAAGAAAAACTCACAAGCTTCTTGTTCAGTTTGAAAATAATGTTTATCTGTAAAAGCATGACTATCAGCATAACAAACTATCCAATTATTCTCTCCTTGAATCAAACACACATCATTAAAATGTAACTCTGTTGTTATATAATAAGTTTTAAAATAATATTCTTTTGGTTTTTGAGCTTCAGCTTCTAAAACTTTTAAAAGTTCAGGAACAGTTTTTATTGGAAGATATGATAATAACTTTTGTGTTCTAAGTTCATTCTTTTTTTCTGTATGTAAAGTTGCAAAATGTACCCATATTTTTAAAACAATAACAACAGGTAAAACACAACAAAAAAGAAGCATAAGTAAAATTTTAAATAATATCATATATTTTTTACTCCTTTAAAATATATTAGTAATCTTCTAAATGTTCTAATTCAAATTCAAGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 397-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATKB01000131.1 Fusobacterium nucleatum subsp. vincentii ChDC F8 Contig131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 396 36 100.0 30 .................................... AAGCAAGATTTTCTATACTTATAAACTTAA 330 36 100.0 30 .................................... GGGGAGGTGTACACAATTTGATAACAGATA 264 36 100.0 30 .................................... TCAAGCCTATCAATATAAGTAAACACTATA 198 36 100.0 30 .................................... CAATTTCTAATAATTGTCCTATTTTTATAA 132 36 100.0 30 .................................... GAGCAGCAACTCAATCTACTGACATGAGTG 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Left flank : ATAGATTCAAAACTTCTGAGAAGACATTTGAAAGAGAAATTT # Right flank : CATTATTTAGAAAAGGTAGGGGATTAATCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.38%AT] # Reference repeat match prediction: R [matched GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 662-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATKB01000132.1 Fusobacterium nucleatum subsp. vincentii ChDC F8 Contig132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 661 36 100.0 30 .................................... GAATGATAACAAAAGAAAAGATATTTTAGA 595 36 100.0 30 .................................... AAATAAAAATGTATTACATTTTAAAATTTT 529 36 100.0 30 .................................... TGAGGAAGAAAATCATAGTTCCATACTTTC 463 36 100.0 30 .................................... ATTAGAAGTTATGGAAATGGAAGTGGAAGA 397 36 100.0 30 .................................... CACCTGACATCATTGCAAAAGTAAATTTGA 331 36 100.0 31 .................................... CAAAGGTTTATCCTTAGCCATAAGGATAGGG 264 36 100.0 30 .................................... TAAAAGATATTCTATTACAGATGGCTTTTC 198 36 100.0 30 .................................... TTTCTTGAACATCTACACCATATAATATAG 132 36 100.0 30 .................................... GTTGTGATACACACACTGTATTAAATAGTA 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Left flank : TATTATAAGGAATTAAAAAATTTAAGTGAAAATGAGTTTTTAAATGAAACTTTAGAAATTAAAGAAATTTTAAAAGATTATATTAATAAATTAATAGAAAATAATTATTCATTAAAGTTTGAAGATGATTTAGATGTTAGCCAAATTTTAAAAGCATTTAGTATAAAATTTGAAAGAAGTGAGGACTTATTATTAAATTTATTTGAATGGTTAAAAATATTAAATGAAATCTTAGGATATGAGATATTTTTCTTTATAAATATAGAAAATTTTTTATCAGAAGATGAATTACTAGAATTTTCTAAATTTATAGTGTATAATAAATATAAAGTTGTTTTTTTAGAAAATTTTTATAGAAATAAGTTATCTGATAATGATAATTTAATTGTTATAGATAATGATTTATGTGAAATTTTCTAATCTATTTAGAAGCATTGAATGATTCGTAACCATTTTGATTAATTTCAGCTTTCAGTATAGACCTAAATATATGAATTGAG # Right flank : CTATACACATTCCATATATAAAGAAATTAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //