Array 1 272100-268900 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAG01000005.1 Klebsiella pneumoniae strain JHTS007 tig00000067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 272099 28 100.0 33 ............................ TGTCATCCAGTTCGCTGATTGTTGCTTCCATGA 272038 28 100.0 33 ............................ CAATTCATAAACAGGCCTTTTCTCTGTCGTAAG 271977 28 100.0 33 ............................ TGATGAATGATGACGGGCTGCTTGAGTGCGCCC 271916 28 100.0 33 ............................ TAAGGATATGCAGTCAGGAGGAGGGATTAGCGT 271855 28 100.0 33 ............................ TCCTTACGGATTTGCAGGCCCATAGCAGCCCAG 271794 28 100.0 33 ............................ CATTGTTCACATGGACGGGTAACTGGTTATTTA 271733 28 100.0 33 ............................ TCTTGTGCTTGCTGGTACCCCTGCGAGTTGCAA 271672 28 100.0 33 ............................ CCTGCAGGCTGGGCTTTGTGGGTACAAGTGACG 271611 28 100.0 33 ............................ TAAATAGCAAGTTTGTTTGCGGTCTTCACTGCT 271550 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAATGCTGGTGGGCG 271489 28 100.0 33 ............................ CGATAAAGAACCCCCTCAGCGTCTTTGGTCAAC 271428 28 100.0 33 ............................ TTATGAGCAAATGCCCTAAGTGCAATGGCACAA 271367 28 100.0 33 ............................ TTGCATCCTGCCTACATGTGTCTTCAGGGTAAT 271306 28 100.0 33 ............................ TAGAACAAAGCGAGGGGTGCCTGGGGATGAAGT 271245 28 100.0 33 ............................ TGACACGCTTTCATCGTCAGCAATGAATGCCAC 271184 28 100.0 33 ............................ TGATAGCTGATTGCCAGTCAGGCGATTGATGGC 271123 28 100.0 33 ............................ TAGATGCATTTTGCTCAAGTCTACTGTGATTAA 271062 28 100.0 33 ............................ CCAGCCAGCCATTGCAGATTCATAATCTGCACG 271001 28 100.0 33 ............................ TACAAATCATTTCGTGGTGATGACGCCGCCACT 270940 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 270879 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 270818 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 270757 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 270696 28 100.0 33 ............................ TACCCCGTACCCGACCCGCTCTAAAGTGACCGG 270635 28 100.0 33 ............................ CAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTC 270574 28 100.0 33 ............................ TTTTGCACAAGTATAAAAAGTGTAATAAAAATC 270513 28 100.0 33 ............................ CACCACGATCTCTATCACCGACGCGCCGACTAC 270452 28 100.0 33 ............................ TAGCGGTGGTGGCCATCGATAACCTTCACGCCC 270391 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 270330 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 270269 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 270208 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 270147 28 100.0 33 ............................ TTCTTCATTAAGCCAGGCAGAGCCGCCATGAAT 270086 28 100.0 33 ............................ CCATTTCGATCTGGTCGTAGACGTCTTCGCGGT 270025 28 100.0 33 ............................ TTCGATGGGGTCCGACTATATCCGGATAGTAAA 269964 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 269903 28 100.0 33 ............................ CTCAGATATCGAAATAGCCTGGCGTCAGGCAAT 269842 28 100.0 33 ............................ CAGATCAAAGCCTGGACTGAGCGTCTTAGTGCG 269781 28 100.0 33 ............................ TCGCGAAATTCCCCGCTGCGACCTCTTATAAAT 269720 28 100.0 33 ............................ CCAAGCTGGTGCACGCGGGCAATTCTGGCGGCA 269659 28 100.0 33 ............................ TCAGCGGATCTGGCATACGTGCAAAAAATATCG 269598 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 269537 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 269476 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 269415 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 269354 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 269293 28 100.0 33 ............................ CAACCGGCACCGTGGCTGCAGGTGACGATTCCA 269232 28 100.0 33 ............................ CACATCGATGAGGACTTTTTTAAGTCTAATCTG 269171 28 100.0 33 ............................ TAATGGATCATCTATCACCCTGGCAAATATTTT 269110 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 269049 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 268988 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 268927 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 281370-280853 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAG01000005.1 Klebsiella pneumoniae strain JHTS007 tig00000067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 281369 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 281308 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 281247 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 281186 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 281125 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 281064 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 281003 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [280994] 280941 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 280880 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //