Array 1 190505-192387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVZ010000005.1 Listeria seeligeri strain FSL L7-0888 NODE_5_length_197786_cov_44.505425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 190505 36 100.0 30 .................................... TGAATATTATTTACTTTTATAATTGAGAGG 190571 36 100.0 30 .................................... AGAAGTCCCGTATCTTCTACATGAATGACA 190637 36 100.0 30 .................................... ATGATAGAACCTTGTTAACACCTGTTATAA 190703 36 100.0 30 .................................... CGGGGCATTTGGGTGATACCAAGGTGTTTG 190769 36 100.0 30 .................................... GACATATCTTCCATAAGAGACGATATGTCT 190835 36 100.0 30 .................................... AGCCAACTTTATAACCACCTTGCTATCCGA 190901 36 100.0 30 .................................... CCGCTTTCTTTAAGCGAATGGATGAAAAGT 190967 36 100.0 30 .................................... TTGAATTTTTTCTAATACATTCGCAAATAG 191033 36 100.0 30 .................................... TTAGCACTATCACGGGGACAAAGCATATCT 191099 36 100.0 30 .................................... TGGTTATGTTATCTACAATGCGAAAAGACC 191165 36 100.0 30 .................................... TTTACTTCTTCCAATTTTCTCGCTCCTTTC 191231 36 100.0 30 .................................... AAAAGAAGCCTCGAAAAAAGTTTCAAATTA 191297 36 100.0 30 .................................... TTATGCCGTGAAAAGATTGCTTAATTACCC 191363 36 100.0 30 .................................... TTTTTAAAACGACACAATATAACGAGGTAC 191429 36 100.0 30 .................................... TAATTTTAAAGATTTGCCCATCGTTTGCAA 191495 36 100.0 30 .................................... ATTTGCTTCTGTCGCACCAGCCGCTGCACT 191561 36 100.0 30 .................................... TGCAAGATACGATGGGGTTTAGTGCAAGGG 191627 36 100.0 29 .................................... ACGATTGAGTACCAAGCAACGAATCAATA 191692 36 100.0 30 .................................... ATAAAGAAGAGCTGATTGGTAAAGATATTA 191758 36 100.0 30 .................................... AGTGTATAATAATATTATTAAAATGAAGTG 191824 36 100.0 30 .................................... GATGGCTTTAGGTGAAGAGCTACATGGAGT 191890 36 100.0 30 .................................... AACGAATATTCGTGGGCATAAAGGACAATA 191956 36 97.2 30 ..........................T......... GAAAGAATATTCGAATGAGAATATGGCAAC 192022 36 100.0 30 .................................... ATAAAATGGCTAACATAAATATTGCCAAAA 192088 36 100.0 30 .................................... AAAAGTAGCTGATTATCCTTCATATGCTGT 192154 36 100.0 30 .................................... TGCATATTAGCCGGTAGTTCATATGCTACT 192220 36 100.0 30 .................................... ATAGAGTAGGGAGCTATTTAGAAGTATCCG 192286 36 97.2 30 .........T.......................... TTCATAGATAGCTTATAAATCACTTTTTCG 192352 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCAAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTGTTCCTCTCAAAAGGAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCACCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGCGCAGTAATGGCAAAGCATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 99672-99959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVZ010000003.1 Listeria seeligeri strain FSL L7-0888 NODE_3_length_271316_cov_45.242742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 99672 29 100.0 36 ............................. GAGGTAACAGAGGACGCAATAGGTGGGGACATAGAT 99737 29 100.0 36 ............................. ACTTCACATAGCTGTTTGGGACTCGAAAAATGGCTC 99802 29 100.0 38 ............................. AGATGCGGATGCGTATAAGATTATGCTACGTATTTATC 99869 29 100.0 33 ............................. TTTTTTCAGATATATGCAACAAATGAATTTCTC 99931 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 99.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCAGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGGGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 106183-109580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVZ010000003.1 Listeria seeligeri strain FSL L7-0888 NODE_3_length_271316_cov_45.242742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 106183 29 100.0 35 ............................. ATCTAATTTACTCTGTAGTCTTGCCGCTTCTTCTT 106247 29 100.0 36 ............................. AGTATTGACTGCGAAGCTTTTAATTTGTCTGTTTCC 106312 29 100.0 36 ............................. CCGGGAAAACCAACGCTGGTAATTGAAAGTGACAAA 106377 29 100.0 37 ............................. AAACCAAAAACTTTATAACCAAGTACAATACGATAGT 106443 29 100.0 36 ............................. AAGCTATTCCTTACATCATTGCGAAACGTGACGCGG 106508 29 100.0 37 ............................. TCATATCCCTTGATGGTTGACCCTTCGACTAACTCCT 106574 29 100.0 36 ............................. CTGGATTTGTTTGCACAACTTGAGCTAGGCGGAGAG 106639 29 100.0 36 ............................. GCTAGAAGAGCCTTTTTAAGGGGTGAAGACTTCGAG 106704 29 100.0 36 ............................. ACGCTAGGGTGTCTGTGTCAAAAATCTGTCACCAAT 106769 29 100.0 37 ............................. GTGATTGGGTCCAAGACCGTTTCCATAACACCTTGTT 106835 29 100.0 36 ............................. CGACCCGCTGATTAAGAGTTTTGATGTGGGATAGCT 106900 29 100.0 37 ............................. TTGTTTGCAGGACAAAAAAGAAATATTCAAGAGGTGC 106966 29 100.0 34 ............................. AAAACAGTCCGGATGGTATATCGTTAATACCTAC 107029 29 100.0 35 ............................. CTTGCATAGACCCGGATAACCGGTTTTGTGGTTGC 107093 29 100.0 34 ............................. TGCTGTGGATAGGAGGAAGAGGTAGTGACAAAAA 107156 29 100.0 34 ............................. AAATTTTCAGCAATGGAATAAACAGTTGGTATCC 107219 29 100.0 36 ............................. GAGGAAGCAATCAACATTTTTACACAAGCTGGTTAT 107284 29 100.0 36 ............................. AAGCGATCCTTCACGGAATATTCTAGGGTATATTCT 107349 29 100.0 36 ............................. TAATTATTTATTTCGTGTTCAACGGTCCTGTGTTTA 107414 29 100.0 36 ............................. ACTTACAGCGAGGTGGGTAATACGAAATGGTTTTCA 107479 29 100.0 35 ............................. CTGAACCAAATGAGGGTGTGCGTTTAGACGAAGGA 107543 29 100.0 34 ............................. ACTTTCTAGCTCTTTGATATACGTAATTTGATTG 107606 29 100.0 35 ............................. CCTCCTAAGAAATTAAGTAGCCAAAACCATTGCGC 107670 29 100.0 36 ............................. TCGTCCCAATAATCGTCTACTATTAGCGGATTTTCT 107735 29 100.0 36 ............................. TTAATTGTAGCAGTGTTTTTATATGTTCCAAAACTA 107800 29 100.0 36 ............................. TTTTGTGTGTTCAAAAAATATTTGTAGCGATCGAAT 107865 29 100.0 36 ............................. AAATTCACGCCGATTCGCATTACTAAAACATTAAAT 107930 29 96.6 35 ......C...................... ATTGATTTCATATATATGCCTCCTAGTTCATATGT 107994 29 100.0 35 ............................. ACATCACAACAATCATCAATAAATGCAGTAATAAC 108058 29 100.0 37 ............................. CCAAAAGCGAAAATTAGTAGCCTTGGAGTGGCGGAAG 108124 29 100.0 38 ............................. AACGGAAAGGGAACGGAAAAAGAACGTGATGCACTAAT 108191 29 100.0 35 ............................. TTTTCAGCGAATTTAGTTACCGTTTCAGCTAATGC 108255 29 100.0 36 ............................. CGGGGATATATTTACCAACAAGTACCCCGATATCCT 108320 29 100.0 36 ............................. AGATATAAATAAATATCAATAAAAAACTAAATTTTT 108385 29 100.0 37 ............................. CATGTCTTGTGATAATTTATCCAGTCCAACCGCGAAA 108451 29 100.0 36 ............................. ATTATAGGGATTGTTGCGGGAATTGTAGCAGGTATC 108516 29 100.0 36 ............................. AAAAGAACTCGCTGCAAGAGTGAGCGCAGCACTAGC 108581 29 100.0 36 ............................. AAGGTTAAAGTAGGCGGGGCTATTTATATCTTTTGT 108646 29 96.6 35 ............................T CCCCTCGAATGGCTTCATCATCGCATGTGCCTAGA 108710 29 96.6 36 ............................T CAGTTTTCACGTGACGCTTCAGAAACTCGATTGATT 108775 29 96.6 35 ............................T GAATTAATGGAAAAATTGAAAGAACAAGGCATCGA 108839 29 96.6 35 ............................T GCACTTCTTGGAATCTTCGTAGCTCTTGGTTTATT 108903 29 96.6 37 ............................T CCTTATTTGTCGTAAAAAATAAGCCTAATTTTCTTGG 108969 29 96.6 36 ............................T TTCGTTAGCCCGAACTCTAGCCAACCATTTTTTGCT 109034 29 96.6 35 ............................T AGATATCCCCGATGAAACTGACCGGGAATTGTTAA 109098 29 96.6 34 ............................T ACAGGAAATCGAGTTAGAAGCAACGAGACGGCAA 109161 29 96.6 37 ............................T TCTGGCGTACAAGGACTTGCAACCGGGACAAATTTCC 109227 29 93.1 35 .......................A....T CTCCCTTTCTGCTTGCTCGAACCAGTGCTTGGTTA 109291 29 96.6 37 ............................T GCGGTAAACCCGAAAACGTCGGCTATCAATCGCACAT 109357 29 93.1 36 ....................G.......T TTGCTAAAAGAAGCAGTGGCTCAGCAAGCTCAAATT 109422 29 96.6 36 ............................T TCTTCTGTGCCTTCATTGCTAGTAGGGAATATCTCG 109487 29 96.6 35 ............................T ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 109551 29 89.7 0 ........C....C..A............ | T [109577] ========== ====== ====== ====== ============================= ====================================== ================== 53 29 98.7 36 GTTTTAACTACTTATTGTGAAATGTAAAG # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAAAGTGGGGGATATTTGGGTTTTGAATAGTAATATTAGGAAGTTAAAAAGTCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GACCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAAATTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACATAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 118188-121849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVZ010000003.1 Listeria seeligeri strain FSL L7-0888 NODE_3_length_271316_cov_45.242742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 118188 29 100.0 34 ............................. TCATAATCGTTAATAATAAAGTCGATTCCGTCAG 118251 29 100.0 37 ............................. GAATTTGAGGGTCTCTGAATTCACGGACAAATCAATT 118317 29 100.0 38 ............................. TCTTTTGCTTTTGTTTCAATACGTCTAAATCCTTCTGA 118384 29 100.0 36 ............................. AGATTTTACTCTTACGAATAAATTTTACTTTGTCTC 118449 29 100.0 35 ............................. ATATATTGAGCATACAGTTCCAGGAGAACAATGGG 118513 29 100.0 37 ............................. AAATACGAGTTAGAGACGGGCATAAAAAAGGGCTCGC 118579 29 100.0 34 ............................. AGAGCAAGAACTAAAACATTCTATTGTAACTCCC 118642 29 100.0 36 ............................. AACAAGGATATGAATTATTAAAAAATCTGGGATTTG 118707 29 100.0 36 ............................. AAAGAAAGTGCAATTGTCGATAACACTATCGTCAGC 118772 29 100.0 35 ............................. AAACGAACTTTATCAAAATTCCGGTCGGAGATAGT 118836 29 100.0 37 ............................. TTCTTTTAACGAACTACTATCGTGTTCAACTTGCTTT 118902 29 100.0 37 ............................. TTTAATAAAAATTGGTTTATAGATAATGTTGCCACGG 118968 29 100.0 41 ............................. GTAATTTAGTTGCATCTACATCATATTCCGATTCAAAATAT 119038 29 100.0 35 ............................. AGACATTCAAGGAGTAGTTTGCGGTAGTCTTCGTC 119102 29 100.0 36 ............................. ATTGTTTTCGTTCCATGTATAGCCCTCATCATCGCG 119167 29 100.0 36 ............................. ACTGTTTTAAAAGAGTTTCTAGGTTTGATAATTGTT 119232 29 100.0 36 ............................. GACTTTTTATTGCGTTATAACTTCGATTCAATCGTT 119297 29 100.0 36 ............................. GATTTGCAGGATTTTCAATTTGAACACCACAATTTT 119362 29 100.0 36 ............................. GAAGGTGAAAGTTATGTTTCCTTATTGACTGTGGAT 119427 29 100.0 36 ............................. ATTGTTAATACTTTTAAAAATGTGCCCAACCAGTTG 119492 29 100.0 37 ............................. TGACTATTTTTATCATCTGCCTCTAAATCTACATAAT 119558 29 100.0 35 ............................. TTAGGTGGTATGCGCTTATCTCGATTCATTATTAT 119622 29 100.0 34 ............................. CTTTGAAGAGCCGTAACAAATGCTTGTACACCTT 119685 29 100.0 38 ............................. GTTAAACGGTCTAAGATGACAAAAACGAAGAGTGCAAA 119752 29 100.0 34 ............................. CACAGTATTTCGATTCAACCGATGAAGCATTTTT 119815 29 100.0 36 ............................. CGTTCTAAAAGAGAAACAACAAGAAGCTGCAAATAC 119880 29 100.0 36 ............................. CAGCTATAAATAGTAAGTTAGAGCTTACTAAAACTG 119945 29 100.0 35 ............................. CGTTTACGCCGTCGTACAGAGGTTCAAAGCCATAT 120009 29 100.0 36 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTTT 120074 29 100.0 35 ............................. TACACTACTTTAGAATTTTACAATGATGAATACGC 120138 29 100.0 37 ............................. AAAACAAGGAGGAATTGTGATGAAATTTGAAATTACT 120204 29 100.0 37 ............................. ACCAGTCCTAGACCAAAAAGGCACAAAAAAAGAACCC 120270 29 100.0 36 ............................. ATTGCAGAGGAAGAGAATAGTGAACAGGTAGAAGGC 120335 29 100.0 35 ............................. AAGGTTACGGCTAAATACATGTCTAAGCTTCTTTT 120399 29 100.0 36 ............................. GCAATTTCTAAAATGTCTCCTACTTTCATTTTCTAG 120464 29 100.0 35 ............................. TGAATTTATTGGGCACAACAGCAGCGCGCAGCACC 120528 29 100.0 37 ............................. TTAAGTAGTGCTTGTCTGTCTGCAGCAGACAATTTGG 120594 29 100.0 35 ............................. AGAAAAATCAAAACGCTTGTAAAGTGTGATTTGTA 120658 29 100.0 36 ............................. ACATCCTCCGCAAACGCGACAAAGACAAATTATAGA 120723 29 100.0 35 ............................. GTGCATGGCTCGATGGTTATGAAGTCGAGAAAGAA 120787 29 100.0 35 ............................. ACCACAACGGCGCTCACAGACAACTTACAGTCACT 120851 29 100.0 36 ............................. GAAGAAAGCGAGTTGGTGGATGAAGAAGAAAACAAA 120916 29 100.0 34 ............................. AGATTTACCCCCTATTTCTTATACAGAACTATCA 120979 29 100.0 38 ............................. TTATTAATCCTATTAAAAACAATGAAAAACCAGCTATC 121046 29 100.0 35 ............................. CATGATTTCACATAACCTCTTTTGAGTTGCTGAGC 121110 29 100.0 38 ............................. GAAAATGGCTTCGGAAAAACTACTATCACATGGAGCCA 121177 29 100.0 37 ............................. TACTATAGCCCCTTTCCGTAGAATGCTAATGAAGTGG 121243 29 100.0 34 ............................. AGCATCATTTCTACTGGGATGCCATTCCAAATAA 121306 29 100.0 35 ............................. ACTTCTTTATTAATATCATTGAAGAATTTAATTTC 121370 29 100.0 34 ............................. ACATAAACAACTTTGAGGCTAGTGCTGATTTTTG 121433 29 100.0 36 ............................. CAGCACCTTTAATTTGCAACGTTGAGCCTTTCAGTC 121498 29 100.0 34 ............................. TCCATATTTTTGAAAAACTCGCTCACTTCATCAT 121561 29 100.0 34 ............................. AGTCTATCAGCTACATAAATAATATCCATGCCAG 121624 29 100.0 37 ............................. CATCGTCGCGGCTCGATAATGTGGGACACGGGAGGCG 121690 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 121755 29 79.3 37 A.A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 121821 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ========================================= ================== 57 29 99.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGTTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCTAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACATAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCAGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //