Array 1 204983-207023 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNZJ01000002.1 Halomonas ventosae strain CECT 5797 Ga0244606_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204983 29 100.0 32 ............................. CCCCCGATGCGGGTGGCGTCGGGGGCTAGCGT 205044 29 100.0 32 ............................. CTGGCCGAACTGACCGAATAGCCATTGCCGAG 205105 29 100.0 32 ............................. CCCAGGCCCGCGAGCATCCTGGCGATCCCGGG 205166 29 100.0 32 ............................. ATAACAAACGCCCCCAAGAAGGCTATAACGAC 205227 29 100.0 32 ............................. CGGCTCGGTCACTACTGACAGGAGGTGGGCAT 205288 29 100.0 32 ............................. TCGCTGAACCAGCGCTTGCTTTTCTTGCGCGT 205349 29 100.0 32 ............................. GTAGGTGTGCGCATCAAAATGGACGTGTCGAA 205410 29 100.0 32 ............................. GCCGCTGAACTGCTGGGATTGGACCCGGTGAC 205471 29 100.0 32 ............................. CAGGCCGACAAGGCGAGCCGTCGCATTGTGTC 205532 29 100.0 32 ............................. TCCCTAGACGCAGGAGTCGAGAAGATGACGAA 205593 29 100.0 32 ............................. CCGAGGCGGAACTGCGCGGCGCGGCGGTAGGC 205654 29 100.0 32 ............................. GAGCGAACCACTGTCCGCCTGGCCTGCTCCAG 205715 29 100.0 32 ............................. TCGGTATAGGCGCGGGTGTTGTTCTCGTGGGC 205776 29 100.0 32 ............................. ATCGACAATCCCGCCCAGGGCAAGCGGCTGAG 205837 29 100.0 32 ............................. CTAGACCCGCTATCGACTTCATAAGCGACACG 205898 29 100.0 32 ............................. GCGGTGAGGTCAGGGGCGCCACGATCGGCCAG 205959 29 100.0 32 ............................. CAACGAGATCGTCGACGGCCTCAGCAACGAGA 206020 29 100.0 32 ............................. CCGTCGGCCATCCAGGCGGCGACGCCCCGGGC 206081 29 100.0 32 ............................. GAACGGGACTTGACTTCGCAGTTACCGGCAAG 206142 29 100.0 32 ............................. CCAGGTCATCCAGGCCGCCCGGCCCTGACCTT 206203 29 100.0 31 ............................. GTTGCGGAACCACATAGGGTCTCTCCTCAGA 206263 29 100.0 32 ............................. CGCCGCCGGTGGATTGCGATTTTGCGGGCCGC 206324 29 100.0 32 ............................. CGCCGGCTGCAGGGCGCCGTCGCGCGCCTGGT 206385 29 93.1 32 ........................CC... GTGGTGGTGTTGCGGTCTTCGGCCTCGCCGTC 206446 29 96.6 32 .........................C... CAGATATTGGCCGCGCACAGGCAGAACTATGT 206507 29 96.6 32 .........................C... GGATGCAGTGGATCGACACGACAAGGGAACTA 206568 29 96.6 32 .........................C... GTCGAAAGCACCGCCAGATGCCCAGGGTAGAA 206629 29 96.6 32 .........................C... GACATCGACGGCCACGAACTGGCGATGGTGCT 206690 29 96.6 32 .........................C... AAGACCGAGGACGGCGTGATTGCCGACGTGGT 206751 29 96.6 32 .........................C... TCGTAGATGTAGACGGTGCCCCGCGGGGCCCG 206812 29 96.6 32 .........................C... TCACGCTCCTGGCTCAACGCCATCTTCGGCTA 206873 29 96.6 32 .........................C... TCCGCCTGGCACATGCCGGTCGGCGTCTCGAC 206934 29 96.6 32 .........................C... TTGGCGCCGATCTGGTCGAGGTCGCTGCCCTG 206995 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.8 32 CCGGTCCCCGCAGGCGCGGGGATGATCCG # Left flank : GGTGAGATTGAACCGCCGCCCCCAGCCCCAGAGGCCATGCCGCCGGCCATTCCCGAGCCTGAATCCGTCGGCGACCAGGGACATCGGAGCAAGTGATATGGCAATGCTGGTGGTGGTGACCGAAGCGGTGCCGCCGCGCCTGCGCGGCCGACTCGCCGTCTGGCTGCTTGAGATTCGCGCCGGTGTTTATGTGGGCGATGTCTCCAAGCGTGTACGAGAAACGATCTGGGAGCAGATCAGTGCACTGGCTGAGGAGGGCAGTGTCGCCATGGCCTGGGCCAGCAACCATGAGTCCGGCTTCGAATTCCAAACGTATGGCGATAACCGCCGCGAGCCGATCGATCATGATGGTTTACGGCTGGTGCGTTTTCTGCCGTCTCGACCAACTGATTGATTTATAGAGATCTTTAACAATCTAGTCTGGTTGAAAAGCAAGCAAAATCGCCGGTGGAAATTCCGCTGGCGGTTTTCTTCTTTGTAAACAGGTGTCTACAATTAGT # Right flank : GCCGGCTCAAGATGGTGATGAGGCCCTGGCACCGGCGGTCAGGCGAGGAGGATGTGTTGGCACGCATGGCGTCCCCTGCCGTCAGGGGCCGCTGAGCGTTTCACATCGGGCCCTGGCCGTTGCCTTTTGGTCGCACGCCCCCGGTCAGAGCCGGGGGCGTGCGGTATGGTAGGCCGTTACCCTGCCGAACTGGCCCTCCATGGCAGGAAAATCCACCCTGACAGGGACTGACGGAGCGCCAGGCATGGCCCAATCCACTCCTCTCTCTCCGCGCTACCGGGTGCTGCTGGCCGGGCTGTTCAGCCAACTGCTGTGCGTGGGCGTGGCGCGCTTCGCCTACACGCCGCTGCTGCCGGTGATGCAGCAGCAGACCTGGCTGAGCGATGCCCAGGGCGGCTGGCTGGCCGCCCTCAACTACGCCGGCTACATGCTGGGGGCGCTGGTCGCGGCCTCGATCCACAGCATCCGGCTCAAGGACACCCTTTATCGCCTCACCCTGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1314-494 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNZJ01000028.1 Halomonas ventosae strain CECT 5797 Ga0244606_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1313 28 92.9 33 ........A....C.............. CCAGACGCGGGACAAAGTCGAGGCCACGAATCC 1252 28 92.9 33 ...........T.C.............. CCCTGGTGCCCATCATGAAACGATCCGCTGCTA 1191 28 85.7 33 .........G..ACT............. CGAGACGCCGGATGCGCCACTGCTTGTGGATAT 1130 27 96.4 33 ..............-............. CAAGTCGCAGCAGAGCTTCTGTGCCAGGTGGTG 1070 28 96.4 33 ..........T................. CCGCACTGCGTCCGTGCGACTGGTCAAGCTACC 1009 27 89.3 33 ...T.........C.-............ CGACCACTATAACCCCGTGTGTTCCGAGATTCG 949 28 92.9 33 .....G.....C................ CTCGAAGAAGGGCGCCCAGGCGTTCAGGAAGCT 888 28 78.6 33 A..A.T.T..G..C.............. CTGGGACCGCGTGTACGGGCGCGAGGTAGTCCG 827 28 96.4 33 ..............T............. CGACCCTGAGTACAAGGATTGGCAGGCGCCGAC 766 28 78.6 33 .ATT.......T.CA............. CCAGGTCCCGCATTCTTCCAGGACCAGCAGGCC 705 28 100.0 33 ............................ CAACCGCACTCCGAAGCACACAAAGGTGATCAC 644 28 85.7 32 .A.......G...C..C........... CAGAGCAACGGTCAGGAGATCTCGACCGAGGA 583 28 82.1 34 ...T.....G...CA.C........... TTTGGCCATCGGTAGAGAGCCGAGGAAAGACATA 521 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================== ================== 14 28 90.3 33 GTCCTCCCCACGCTCGTGGGGGTGTTTC # Left flank : GTATGGATAAGCCCGAGTGCGTGCAGACACTCATTATCCAGACTATCGCACCCCGGCGTTTGAGCAATCTAGGCCAGGCCACGGCCTTAGTCGCTTGACGAATGGGGGCGCTTGTCGATCATCTGAAAAATAACGGTTTTGACAGCGTATCTGATCAGGCTGAGTTCTATTTGCTCAAGGAGGATGACGGCAAGTAGCGAGTGATTCGCCCTCTTGTTCACTAATTATCGCAACTCTGCTATCAGCAGGGTAACCTGAGATGATCCGCAGCGGACAGCCGGCAATGCCCGCCAGAAGCCTGGCAGCTAGGGCGGTGAAAGGGATTCCGGTGCAACGTCGTCTAGCGTGACAGCCAAGCGCGTTTCAAGTATCTGGGCAGGTATTGGGATTTTCTGTTAAAAGTCATTCAGGTCACTAACTCTCTTGAAGTCGTAACGGATTCAAATTTATGCCCCTGGAGGTGTTTCCGAGACGACATAGACGCCTGCGGTGGATGACAC # Right flank : CAATAAGCAGGGTGTCGGAGGCATCGGCGGCTGCGCCGTGTTGACCAAGGTCCTCAAGGAGGGTGTGACACTCCTCAACGCCTTATCAGTCAAGATCGACAATTTCCTGGCCGGCTTACTGCCGACGCTCTACAGTTCCTTCGGGTTCGAGACTGCCTGAACCGCCCCGTTCAACCCTAAGTTCATAACCAAGACCCAGATCAAGGACGCCGTCCAGTTCTGGAAGGACACCACCCTCGGCTTCGACCCCAAGAAGGGCATGCCTGAGATCGCATTCATAGAGTGGAGGAGCACCGATGCCGACCGAGAAGGCCTCAGCGCAAGATATCTCGACAGCCGTCCTGCGGGTAACCTCCCGAGAGGAGCTGAGAGCAATGCCGCCACAGGTGTCGACGCCGAAGCTATAAGTCCGTAAATCATCAAAACAGATTGTCCCCCCGACCCGCATGACCTTTCCTTGCTGGTGACCAAACCTGTAAGGGCCGCGCCATGCT # Questionable array : NO Score: 3.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCTCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3972-2540 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNZJ01000028.1 Halomonas ventosae strain CECT 5797 Ga0244606_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3971 29 75.9 32 .AA.C....AT..T..T............ AAGCAGGTGACCGACACCACCGGCAACCTGCA 3910 29 89.7 32 ...A.....A......T............ GAGCGCGTCGGCAAGCACGACCGCCAGGCGCT 3849 29 100.0 32 ............................. TGGTGCACCGGGGCGTAAGTCGTGTTCGTGCC 3788 29 96.6 32 ..........T.................. CCCTGGCGCGTTGCTTTCTGCTCCTGGCGAGC 3727 29 89.7 32 .C.........A................T CACGACCTGGTGACCGGCATCTTCGACCGCCT 3666 29 89.7 32 .C.........A................T TCGACGCGCTCCACGGTATCGGCGTAGGCGCC 3605 29 82.8 32 ...C.....A...AG.T............ CACTGCGGATCTTTGCTCCGATACGCCCGCAG 3544 29 100.0 32 ............................. CCCTGGAAGAAGGAAAGCCGAAACCTGACGCG 3483 29 89.7 32 .C..........A...............T GCGCCAAGCGGGCGATTTATCGAGTTCACCGT 3422 29 86.2 32 .C..........A.......A.......T ATCTCGTCAGCGACCTACTACAGCCGGCTGCA 3361 29 93.1 32 .C..........A................ CCATGGGCCTGCGCAGCGATGTACAGACCGAC 3300 29 93.1 32 .C..........A................ CACTGCGGGTCTTTCGAGCGATACGCTCGCAG 3239 29 93.1 32 .C..........A................ ACGGCATCGTGTCGCGTCTGGCAGACGATGTA 3178 29 89.7 32 .C..........A...............T TACGCAGGCATCCGCTACAAGCCGGGGCGCTC 3117 29 96.6 32 .C........................... ATCGCCGACCAGCATGGCATTGCAGAGGGCAC 3056 29 96.6 32 .C........................... AGGTCGCTGCCCTGTGCCGTCGCCCTGCTGAT 2995 29 100.0 32 ............................. ATCTCCGCCGCCACCTTGATCTTCACGCGAGC 2934 29 100.0 32 ............................. GAGGCCTCGAAGGTGGTGGCGTCGCCGCTGTC 2873 29 100.0 32 ............................. GAGGCCTCGAAGGTGGTGGCGTCGCCGCTGTC 2812 29 100.0 32 ............................. GATGTGGAGTCCATTTCCTCTGTCCCGATTCT 2751 29 100.0 32 ............................. TGGACATTGTTCTGGAACGCCGTGGTGCTGCC 2690 29 100.0 32 ............................. AGGGTTACGTCGACGTTGGGGTCGCCCGGCGG 2629 29 86.2 32 ...C.....A...T..T............ TGCTCCCAGGTCATGGCGCGGATCGGCAGGAC 2568 29 79.3 0 ...C.....A..G...T....A......T | ========== ====== ====== ====== ============================= ================================ ================== 24 29 92.8 32 GTCTTCCCCGCGCCCGCGGGGGTGTTTCC # Left flank : CAGGGACTTCCACATGGTGGGCAGCGGCTATGACACCGAGGATCCCTGGGAGAGCCTGATGGTGCCCAAGACGGCCGAGGGCAAGAAGGCCGTGGGCGGTGGCACCAAGATGACCTACCGCTACGCGCTCCAGGACATGGCGTTCGCCGTGGCGCTTCAGGTGCCCGCCGACCTGGCCGGGGAGATCGGCCAGGCGCTGGTGGCACCGGCCTGGGATCTCTACCTCGGTCGTAAGCACTGCGTGCCCACCGAGCTCATCTACCAGGGGCAGTTCCCCACGGTCGACGAGTCGGTCGAACATGCCCGGGAATTGGCCAGGAGCAAGCAGCGAGCCTTCAGCTTCCGAGTCCAGGAGGGCGAGCACGAGGGGGAGGTGCTGACCCTGAACGACGTGCCCCTACAGTTCGGCACCGACAAGCGCTACCGGGATCGACGGGTGACCGTTCAGGACTGGCAGCCGTGACCATTGCTTGACCCTGTTCTTTAAGAATCTATGCCAT # Right flank : GTCACTGATGCGAGCAAAGACGAGCTGACCCTCCCCCTAGTTTAGGTCCGCTGAGGGGTAAAGGTTGGCATGGTGAAAACAATTTATGATATTGTTTTTCTTGGTAATTTATAATGAATTGGAGGTGGGGATGAAAATATTTTATTCGGCAGTCTTTGGATCTGTACTTTTAATTTCAGGCTGCGCAACCACGCCTGTCCCAACAGACGCTGCTCTGGAAGTGCCACAATCTAAAGTGCTGAATGAACGGTTCCAAATGCAAGAAGAGGGCATGGGTCAGGTTGTTGTGAAGCGGGATAGTGGTATGTCAGGTTCGGCATGTGACTCTCGTGTTTATGCAAATAGAGAGCCCGTTGCTGAAATTGGTCCGAGCGAAAAAGTGACATTTTATCTTCCACTGGGTCGTCAAATGTTAGCAGCAAAAGCTACAGGGGTATGCGCTGGAGGACTCGTTGAAATAGAAGCCAGTGTTGAAAAGGGTGTTCCTGAGGTATATCGGG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCCGCGGGGGTGTTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //