Array 1 2045-3663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JROY02000016.1 Helicobacter sp. MIT 03-1616 NODE_16_length_27577_cov_71.1882, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2045 36 100.0 30 .................................... CCAAACTTACTACCATATTCACCGCAACCA 2111 36 100.0 30 .................................... CACACGTCGCTTGTTGAGGACTATTACCCC 2177 36 100.0 30 .................................... GATTTTAGTGCTAAAAAGATTGCTTCACTT 2243 36 100.0 30 .................................... GGGCAAGCTTAGCGGCATCTGCTCCAAGAG 2309 36 100.0 30 .................................... TTGGGTTATGGAGAAATTCGCCAAGAACGC 2375 36 100.0 30 .................................... ATTTTGTATAAAACCAATTGCGCAACACAA 2441 36 100.0 30 .................................... AAATGATGTATCCAATGAAAGCGAGCTATT 2507 36 100.0 30 .................................... GCGAGAAAGTTTTCCTAAATCCAAAACAGG 2573 36 100.0 30 .................................... TGTGCATCGGATCCTACGATTGATGAAAAT 2639 36 100.0 29 .................................... ATCAAGGCAAGGAGTTCCCTTTAAAAGCT 2704 36 100.0 30 .................................... AAATTAAAATGCAAGGAGTTTATATCAAAA 2770 36 100.0 30 .................................... CAGATGGTTAAGCAGTATAAAGATCAAATT 2836 36 100.0 30 .................................... ATAGCAAAGCACCTCCTTTCATAGATTTAA 2902 36 100.0 30 .................................... CCAGTCTGCGAGCTCGCGTTTAAACATCCC 2968 36 100.0 30 .................................... TGCAAAAAATGTCTTTGATAATGTCGCTTT 3034 36 100.0 30 .................................... TTCCACTATGCAACATTATCTGCTCGAGCG 3100 36 100.0 30 .................................... CATAGCAAAGCACCTCCTTTCATAGTTTAA 3166 36 100.0 30 .................................... AATCTCCAAAATCGGTCGAAGACCTATCGG 3232 36 100.0 30 .................................... ATCGTTTTTACGATTCGCACATACACGGTA 3298 36 100.0 30 .................................... AAGTGCTGCAAGTTCGACTTCTACTGTTTT 3364 36 100.0 30 .................................... GGCAAAGAAATATTTAAGCGATGATGTGGT 3430 36 100.0 30 .................................... CACAATCCACCGGCATCCGCATATGACTCA 3496 36 100.0 30 .................................... GATAAACCTCAACACGAGAGCCAAGCAATG 3562 36 100.0 30 .................................... AATAGCCGCATTTTGAATATAACCAAATTT 3628 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGCCGCTTATTAAATTCTTTTATGGTAAAAT # Left flank : AATCTTGTTAATCTTACTAATTGCGCTTTGTTCCATTTCGGCGATAATTTGCTTTTCTTTAGCCTTTTCTTGTGAAATCTTTGCTTCTTGTTGCACGATTTGAGCTAAAGTCGCGTTAATTTTAGTATCATCTCTTGTTGCCTTTGCCTCTTGCAAGTTGATTTCTAGGATTTTTTTCTCTAGCTCTAGTGCTTTGATTTTGCCTCTTAATTCCTCTCTTTTCTTATCAATGGCTTCCCTTTCCTTGAAATCTGCTTTTAAAGCCTCTCTTTTTTTATCAAAACTCGCATTGTTAAAAACCTCTGGTAAAACGCCCTTGATATGTGGCTGTGGCTTTGTAGGGACCGGCGGTGTAGCAAAGAGCGTGCTAGATAAGGCTAACATCAGTGCTAAACTCATAACTTTTGCTTTCATTGCTCCTCCTTTATTTTGGTATCAAATGTATGAAATCATAATAATGATATGGCAATCTTGTTAATGCTCAACATATCAAAGTATTA # Right flank : TCCACTTTCTCAATTATCGTATTTTGCGGTATTTGAAAGGCTTTAAGGGTGTAAAATATCCTAAATGAGTGATTTTTAAGAAAATCTAAGATATAATCCCACTAAAGAATTTAACAAGCGGCTAAAATAAGGAGTTTTCGGTCTCCGCAGGGTTACAATCCCTTAAAACCGAATCTACTTTAAATCTTTTTACCAATAAGTATTTTCAAACATTTTAGCGATTAAATCTTTAGAAACTTTGTCCTTATAACTTGACAATAGACTAAAAAAGCGTAAGCTGTCTTGGTGCATTAGCTTTTTCATTCTCACTTCTACTGCCTAGCAATAATCGCATATTATCAAATTGCTTTTCAGTAAGGATTAATGCCCTAATATGCCCTTTGGGAGGCACAATCAAACCCACCTTATCTAAATAATTATTGGCACTTGCCACACCTTTGCAGATTCTCATATACACGCTATATTGCAACATCATAAAGCCATCTTTGATAAGATTCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCGCTTATTAAATTCTTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //