Array 1 19392-21519 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDEH01000020.1 Xanthomonas melonis strain CFBP4644 Xm-CFBP4644-G120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19392 28 100.0 32 ............................ AGGAAAGGACATGACCGACACCAACACGAAGC 19452 28 100.0 32 ............................ TCGGCGCGCAGCCGCTGTTCGTGCCGGCAGAC 19512 28 100.0 32 ............................ AGAAGAAGCAGGGCCGTCTCGTACCGCTCCAC 19572 28 100.0 32 ............................ ATAAAGCCGCAGCGCAGGTGATGCGGATTACA 19632 28 100.0 32 ............................ AGATCCGTCGCGGTGACATCGCCGGTAGTGAC 19692 28 100.0 32 ............................ TTCCGCGCGTTCCTTCGGAGCCGTGGAGTGCA 19752 28 100.0 32 ............................ TTGAGGACATTTGTTCTCAGGCTTGCAAACGC 19812 28 100.0 32 ............................ ACGAAGATCGGAAACGCGATGTAGTACCAGGG 19872 28 100.0 32 ............................ TTGGACGGCGGAGCCGCGCCGGGCGCCGTCGC 19932 28 100.0 32 ............................ TGGAGAATGGTCATGAGTGAGACGAAGTGGAC 19992 28 100.0 32 ............................ GGGAAGGCCTAATTCAGTGATCGACTTAATTC 20052 28 100.0 32 ............................ ATCCAGGACGGCGACGCCATCCTGTTCGACAC 20112 28 100.0 32 ............................ CAGCGGCTGCTCCGGCTGCGCGATGTGCTTGA 20172 28 100.0 32 ............................ TGCGTAAAGGCACGATTACCGGAGCACGTCTG 20232 28 100.0 32 ............................ ACGGCCACCAGAGCCAGCACCCCGACCACCGC 20292 28 100.0 32 ............................ TGGCGCCGCCAGAGCTTGGAGTCATCCGTGAC 20352 28 100.0 32 ............................ AACAACACAGGCCACCGACATGCCCTTCGCCA 20412 28 100.0 32 ............................ GCGGCCAGGGAACAGCGGGCCGGCGCCGTTGA 20472 28 100.0 32 ............................ TTCGCTCAGGACCAGCGCCGGTGCGGCCATAG 20532 28 100.0 32 ............................ CATCGGTCTTGAGCGTGACGGCGTACGGACCA 20592 28 100.0 32 ............................ TGCTCGAGCACAAGGAACAGGCGGCGCATCTC 20652 28 100.0 32 ............................ TACCAGATCACCGCACTCGAACATGTGCCACA 20712 28 100.0 32 ............................ ACACGCGGGCTGGTCATTGCGCGGGCAAGCAC 20772 28 100.0 32 ............................ CGCAACGCAGGCGCCGGACGCATCGGCATCGC 20832 28 100.0 32 ............................ AGCGTCCGGCCTGCCAGCTTGGCCTGCTGCAC 20892 28 100.0 32 ............................ TTCACCGGGCGCAGCTTGATGGTCTTGCTGTT 20952 28 100.0 32 ............................ TCACCGGGTCGCGTCCAGCTGCGTCCAGCCAC 21012 28 100.0 32 ............................ TGACCATGAGCAAGCCCACACTGGATTTCAAG 21072 28 100.0 32 ............................ GGGCAAACCCCGCTCGAGCACCACTATGGCTG 21132 28 100.0 32 ............................ GATACCGCGTATTGGTCCTACATCGGGCAGTA 21192 28 100.0 32 ............................ TCCCACTGCTCGATGCGATCGATGTGATCCGG 21252 28 100.0 32 ............................ TCTGTGGTCTGGTCGATCGCCTGCTGCATTTC 21312 28 100.0 32 ............................ ACGTCCAGGGCCAGCCGATCATCCGCCTGCGC 21372 28 100.0 32 ............................ TGCACCGCGATGCGCACACGGATCGCCGAAAG 21432 28 100.0 32 ............................ GATGCGCTGCGCTTGGGCGCGCGACGTGCAGC 21492 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CATTGCAGACATTGATGGCCCCGCCCTGGCTGCAAGGCATGCAGGATCATTTGACTGTATCGGACATCTACCCCACCCCCGCTGGCGTGCAGCATCGGCGAGTGATGCGGGTACAGGCCAAGAGCAGCCCATCACGCCTACGCCGCAGGGCGATGCGACGCCACGGACTGGATGCAGAAGCGGCGCTGCAACGCATCCCGGATTCGGCCTCCGAACGATTGCAGCTGCCCTTCGTGGTTCTGGGTAGCCGCAGCACAGGGCAACCCTCGTTCCCGCTCTTCATTCGCCAGGGTCCATTGGCGTCCACTCCAGTGCCGGGCACCTTCAACAGCTACGGCCTGAGCCAGGACGCAACCGTTCCCTGGTTCTGACCCTTTTTTCCTGCGCAGAACACAGCTCTTAAGAATCAACAACTTGGCGGGCCTCCTAAGATAAGGGGGCCCGTTTCTTTTTTGGGGATCTTCCCAGTACCATCAACAGTTTGCGTCATTTTTTGTCTT # Right flank : ACCTACATGTCAACGCCGATTTAAATCTGACCCACTTTTCGTTGGATCGCCGAAGTAAATCTGACCCACCCGGGGTCTTGTTCGTTGCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 131179-128689 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDEH01000013.1 Xanthomonas melonis strain CFBP4644 Xm-CFBP4644-G113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 131178 28 100.0 32 ............................ CAGCTGGCCTAGATAGCCCAGCGCATTGCCGG 131118 28 100.0 32 ............................ TGTTCCGCGCCCTGGTGTGGCCGTATCTGTTC 131058 28 100.0 32 ............................ ACCGGCGGGTTCCCTGGAAAGGATCATGACTA 130998 28 100.0 32 ............................ ATCCGGCGAGGAGGTTTATCTGACGCGTCAGA 130938 28 100.0 32 ............................ TTAGGGTCTTGCAGCTGTTTCATGAAGAACTC 130878 28 100.0 32 ............................ AAGCGCGCAACCAGGCGCACCTCGGCCGGCAA 130818 28 100.0 32 ............................ GTCATGCGCCGCGTCTGGATGCCGAGATTGAC 130758 28 100.0 32 ............................ CAGATACTCTTGCCGCCTTCTTCATACACCTC 130698 28 100.0 32 ............................ AAGTGCGGGCCGAACGCGAGGCAGCGGCGGGA 130638 28 100.0 32 ............................ AGCGTGATGCGCTGGACTTCATCGAGGACTGG 130578 28 100.0 32 ............................ GAGCCGATGGCACCCGCGTGCTGTCGATCCAC 130518 28 100.0 32 ............................ CGGAGCAGTTCAAGGTGATCGGCGTATTCCTG 130458 28 100.0 32 ............................ AACAGTTCGCCAGCGATCAGGGCGCCCCGCCC 130398 28 100.0 32 ............................ ACAACAGGCGACGGTAGTAGCGAGCGGTAACA 130338 28 100.0 32 ............................ AATTAACCGGGACAAATAAGACGACTTATCTT 130278 28 100.0 32 ............................ GGCACGGGCAACTGCCTAAGTCATGTCGACCT 130218 28 100.0 32 ............................ AATCGATAGATTGGAAATCAGCACTGTCGGGA 130158 28 100.0 33 ............................ GAGCAGGCATACGCCGATCACCTTGAACTGCTC 130097 28 100.0 33 ............................ AAGGGCCGCGCCGCGGTCCTCGACCTGGAACGT 130036 28 100.0 32 ............................ TTTGCGCTTCCGCGCCTTCGGCAACGATGATC 129976 28 100.0 32 ............................ TGTTTGGCACACGTGGCACACATCAGAACCGC 129916 28 100.0 32 ............................ TGACTCGTGTCGATATCGCTATCGATGACCAC 129856 28 100.0 32 ............................ GCAGGGATTTGACCCTCACCAGCTCCCAGCGC 129796 28 100.0 32 ............................ GTGTCGCGACTGGTTGCTGTGCGCTGGCTCGC 129736 28 100.0 32 ............................ AAGCGCTGTAGACCTCGCCATTGTGCAGCGTG 129676 28 100.0 32 ............................ GTCCGCGCCGGTGAGTTCGACCCCCTTGCGCT 129616 28 100.0 32 ............................ ATCCGCAACAACAACTACACGGACGGCGAAGG 129556 28 96.4 32 ...........................G CCGCAGGCACATGGATAGGATTGCACAGGCTG 129496 28 96.4 32 ...........................G TGTTTGGTGGGGAATGCCCAGCCAAGGCTCAC 129436 28 96.4 32 ...........................G ACCCAGCGCGGTGTGCCTTGGTACTACTACGC 129376 28 96.4 32 ...........................G TTGCGCACGTTGATGCCGACACGCTGGGTGTC 129316 28 96.4 32 ...........................G AGCCACACCGCCACCGAATGCACCTGCAGCGG 129256 28 96.4 32 ...........................G GGTCAGTCCGGGCCAGTAGATCATCGATAAAA 129196 28 96.4 32 ...........................G CTGCAGCACCGCGCGCAAGGTGCCCTGGGTGC 129136 28 96.4 32 ...........................G GAGTGCCACGGCGATGATGCCAGTGACAAGGG 129076 28 100.0 32 ............................ AAGGCGAAGGCGGTGCTCGAGGTGATGGGCAT 129016 28 100.0 32 ............................ GATGGCGCGGCGGTGCGGGGCGAGCAGGTCCA 128956 28 100.0 32 ............................ TCTACAGGCTGCGCGATCAGCGTCGGTGCCTG 128896 28 100.0 32 ............................ AATCATCGGGCGCAGGCTCCACCCCGGCCAGG 128836 28 100.0 32 ............................ TTGCACTGTTCCGACCAGCCCAGGCGGTAGGT 128776 28 100.0 32 ............................ TTGGCCAGCGCCGCACTGCCGCGCACCGTTGC 128716 28 92.9 0 ...........T...............C | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.1 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : AGGCGTGACCTGTACGGCCAGCAGGTGGCCCAACGTATCCACTGCCATGTGCACCTTGCTGCCCTTCTTACGCTTATAGCCATCGTAGCCGGCCCGCGGTCCGCTCTCGCAGGTGGACTGCAAGGTGCGGCCATCCAGGATCACGGCACTAGGCTGACCTTGCTTGCCCTGCGCCACGCGCAGCACCGAGCGCAGATCGCTGACCATTGCCTCGAAACAGCCGGCCTGCAGCCATCTTTGGGTCTGCTGGTAGACCGCCTCCCACGGCGGGAATTCATGGGGAATCAAGCGCCACTGTGCCCCAGCACGCGCCATCCAGCGCAGCGCGTTGAACATCACGCGCAGGTCGTACTTGCGCTGCCGCGCCTGCGGATCCATCAGCGTCAGGTAGGGCGCGGCGAAGGCCCATTCTTCATCGGAAACGTCAGTGGGATACGGGCGTGCTGGCTTCATCCCGATACGATAGCCGCGTCTCCAGGAAGTTCATAACACGCTCTAGG # Right flank : TGCGGGTTGTCGACTTTGCTGTCGCCGCCGATTCAAGTCTGCCCCATTCCGGCTGGATCGCCGAAGTAAATCTGACCCTCCCGGGTTCAATCGCCTGGGCATACCTGCGGTGTCGCATGGCACTGTCGATGCAGTGCATACCGGCTGCGCAACTGCGGCGTGCGATGCGGCACTACAGGCAGACGATGGGTCGTGCTGCGGCGCTGCCGAATACCCATCACTCGCGTCCGTAAACCCCCAGAAACATCGCCACCGCCGATTCGGCCACCTGTGCCTGTTGCTCGGCCGACAAGGGGGGCTGGCCGAAGGCCAGCTGCGGCCAGAATGCGAATCCCTTGATCAGCGATTGCAGCTGTTGCGAGGCGAATTCCGCGTCCATCGGCGCCAAGCGGCCGTCGGCCAGTGCCGCGCGCAGCCAGGTGGTGGTGCCTTCTTCCTTGCTGCCCAGTTGCGACAGCAGTGCGCGCGCGCGTTCGGGCGAGTGGATGCCTTCGGCGATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 132998-132070 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDEH01000013.1 Xanthomonas melonis strain CFBP4644 Xm-CFBP4644-G113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132997 28 100.0 32 ............................ TGCTTGACCGCCTGGCGCAGCTTGTTGAACTC 132937 28 100.0 32 ............................ AAGTCCTTCGCCGCCCAGGCCAAGTTCTCAGC 132877 28 100.0 32 ............................ GCAACGTAAACAGGTTGAAGATCACGATCGAT 132817 28 100.0 32 ............................ ACCTGGTCCACTCAGCCCGGCTACTCCGTTCA 132757 28 100.0 32 ............................ TGGACCAGTAAGGTGCATAGCGATCGAAGTGA 132697 28 100.0 32 ............................ CAGACACGGCGACAGCGCATATGGCGGATGCG 132637 28 100.0 32 ............................ ACGGCTTGGCAGGCGCGGAGCTGGTCGTCGGC 132577 28 100.0 32 ............................ GCCCAGCATCTGGAATGGCTCCGCATACGCAA 132517 28 100.0 32 ............................ ACGTCGCATTCGCTGAGCCTGCTTCGCCCCAC 132457 28 100.0 32 ............................ GAAAGGCCAGGCACTCGGTGCCGCCGCATCGC 132397 28 100.0 32 ............................ GTACAACCCGGATCCGCAAGCGCCTGGGATTC 132337 28 100.0 32 ............................ AATGACCCTGCGCCTGTGCCGTCCGGCTGCGA 132277 28 100.0 32 ............................ ATATGCGCTGTCGCCGTGTCTGGGCAGATGAC 132217 28 100.0 32 ............................ TCAACACGGGATGACAGAGATGATGTACCTGC 132157 28 100.0 32 ............................ AATCAGCAGCTGCCCCATGTACGGGATCACAG 132097 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CAGCAGCCTTCAAAAGGCCACCATCGTGGCCCAGGTGGGTCACTTTTACTTCGGCGCTGTGGGTCAGTTTTACATCGGCGCTAACACCTACAGCGTGCGAGCGCAGATCACCAGCG # Right flank : TTTGGGATACACCACGGCCGCTGGCCTCTAGAGCGTGTTATGAACTTTGGAGGAGCGTGGCCGCATTGCCGAGCATGAGGATGGTGAAGACGACGAAGTGCAGGCCAGCTAGTGTTTCTGGCAGGCGCTCGTAATCGCGGGCCAAGCGCCGGAACCGATTGAGCCAGCCGAAGCTTCGCTCCACTACCCAGCGACGGGGCAGCAGCACGAAGCCCTTCTTTGCCTCCGGCAGCTTCACCACATGCAGCTCGATCCCTTCTTCCCGGGCCGCTTCAGCCGCTTCCTGCCCCGTGTAGCCCTGATCGACGAAGGCGAGCTTCACCGTCTCTCCCGTGACGTGTTGAACCTCCTGCGCAAGCGATCGCACCTGGGCACGTTCCTGCTCGTTGGCAGGCGTGACCTGTACGGCCAGCAGGTGGCCCAACGTATCCACTGCCATGTGCACCTTGCTGCCCTTCTTACGCTTATAGCCATCGTAGCCGGCCCGCGGTCCGCTCTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //