Array 1 247540-250186 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKQZ01000004.1 Klebsiella pneumoniae strain EuSCAPE_IT010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247540 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 247599 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 247660 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 247721 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 247782 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 247843 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 247904 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 247965 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 248026 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 248087 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 248148 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 248209 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 248270 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 248331 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 248392 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 248453 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 248514 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 248575 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 248636 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 248697 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 248758 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 248819 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 248880 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 248941 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 249002 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 249063 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 249124 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 249185 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 249246 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 249307 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 249368 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 249429 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 249490 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 249551 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 249612 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 249673 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 249734 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 249795 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 249856 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 249917 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 249978 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 250039 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 250100 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 250158 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //