Array 1 2725634-2723199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019717.1 Paenibacillus larvae subsp. larvae strain Eric_V chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2725633 32 100.0 34 ................................ TGTAATGTCCGAAGGCAAACGGTACATACCCCAC 2725567 32 100.0 34 ................................ TTCTCAGATCGACGCTCCAATATATGTTTAGGTA 2725501 32 100.0 37 ................................ ATAGTTATGAAATTGATTGCTATTGCAAAGGGGTCTT 2725432 32 100.0 34 ................................ ATGGCCTCCTTAATGAATGTATTGAAACAATGAA 2725366 32 100.0 33 ................................ CTGTTAGTATGCCTGTGGATTTTAGCAAGTATT 2725301 32 100.0 34 ................................ CACAAACTTTCAACATAGTTAATATTGTTAAAAT 2725235 32 100.0 34 ................................ AGAAATATATTGAGTACGCTTCGGATGTCCAGAA 2725169 32 100.0 38 ................................ CTCCTCCGTTTTTGGACAACATAGCAACGTCAGTATTC 2725099 32 100.0 37 ................................ CATCATCAAAATACAAACCGAATTGATTGCTATTCCC 2725030 32 100.0 36 ................................ ACCATGGAAGCGTTGAGACATGGGCCAGAAGATCCA 2724962 32 100.0 35 ................................ AGAATGTTGTCGGGCAGCAGGTTGGGCTCTCCTGC 2724895 32 100.0 35 ................................ GGGTAAATTTCCCGACGATACTGAGATCACCGGAC 2724828 32 100.0 35 ................................ ACATAAGGAAATTATGTGAAGGAGGTGATTGACAT 2724761 32 100.0 33 ................................ CGACGTGCAGCAACACGTCTGGGGCGTTTTTCC 2724696 32 100.0 34 ................................ GGATAATTTCCGAAAGGTTATTTTGGTTTTCAAT 2724630 32 100.0 33 ................................ ATTGATCGTTTCTTTAAAGACTGCCCAGGCAAA 2724565 32 100.0 33 ................................ AGTGGTCCATTTCGGTTCTGTTGCAGCTTGCTC 2724500 32 100.0 37 ................................ ATCCAGCAGGTCAACATTGGTTTACCAGACTTGGATT 2724431 32 100.0 35 ................................ TACAACTAGAGATTGAAGATTTAGGAAGCAAAATA 2724364 32 100.0 34 ................................ TTCTGGCCAATACCGGAAAAGAAGTTTGATAGCA 2724298 32 100.0 36 ................................ AAGGGAGGGGATTTTCAGACTCAGTTTAGACTATAC 2724230 32 100.0 37 ................................ ATTACAGGGGCAGGGAGGTACAGAAGATAGGAGGTAC 2724161 32 100.0 34 ................................ GATAATTTGGAAGATGGCGAAAGCGAAGACGAGG 2724095 32 100.0 35 ................................ TAATAGCAAACACTGCCAGCTTAATTTAGACCCCC 2724028 32 100.0 34 ................................ ATATTTGACGGTCATGAAGGATTGATCCGGCATC 2723962 32 96.9 35 ...........................A.... TTTTAGCCAATCGGTCATTAATAGCTTCTTGCTTA 2723895 32 100.0 35 ................................ GTGAGAGTGATTGAGGCTTTAATTCCGCGGCCAGT 2723828 32 100.0 35 ................................ ATTGAAAACGGAGACGTAACTAACGCGTCAGTGCC 2723761 32 100.0 34 ................................ ACATCCACATTGTCAATTACGCGGTAGACTCTAC 2723695 32 100.0 37 ................................ CATGCCGGACAATTACGCAAATCAGTAACTGCCTGGC 2723626 32 100.0 36 ................................ TTTTTCCCTCGGGAAAATAAATACATTCGATGCATC 2723558 32 100.0 34 ................................ ATAAGATCGTAAAAACCCCGGTTGGTTTTTCGGA 2723492 32 100.0 34 ................................ AATTGGTGCCGGGTCCAAACACACTAGAATACAA 2723426 32 100.0 33 ................................ GATAGGGAGATTGCGCCAGTCATCGGTTTTAAT 2723361 32 100.0 34 ................................ ACTAGAGCAATGAGCATTAACGGGATTCCAATCA 2723295 32 100.0 32 ................................ CAATTAAGCCGACCGCCATATAGCGCGGCTAT 2723231 32 84.4 0 ...............A..AGT..A........ | C [2723203] ========== ====== ====== ====== ================================ ====================================== ================== 37 32 99.5 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATGCTAGTTTAACCATATTACATTTATTTTTTGAGGCATATTGACTAATAAATGAATAGGGAAGGTGATGGGAGGGCATTTGAATTGTGGAATTGGGTTTTCCATAGAGGTAAATATATGCCATGCTGGATATTTCTCGCGCTAGTAATGGAAGCTGATATGGGGTATTATGGAAGTGAAAAGGAGTGTACTTCTGTAATTGGACATTTGTAACTGACAAATGTTTTCATAAGCAGGTGATAGGGTAGATATTACGTCAATCGATATTAAGGCTAACGGGTGTAAAAGAAGTAATTGATTTGGAAGGTCTATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTATTTGAATGATTTAATCAAAAAAATGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : AAAAACTAGAGGCTTTGACCACTATCAACTGTGCCGTGCGATCGGACGGAACGACGCGAAAAGGCATCCTATTTTGTGAACTGCACCCTGTCAAGTAGACAGTACAAATAATAAAAATTAGTTAAGCGGCCTTGATCCTGAATTCCATCGGACTAAGGCCGTTTAATTTCGCTTGTAATCGCTCGTAATTGTAAAAGTAAATGTAAGCCTCAATGTCCCTTTCGAGATCTTCAAAGGTATGGTAAGTATGCAAATAATACTTCTCACATTTTAGGGCTCCCCAGAAGGATTCCATGGGGCCATTATCGATACATCTGCCAACTTGAGACATGCTCTGCATGATGTTTCCTTTCTCCAGGATCTTTTTGAATTTTTGCGAGGTATATTGAAAGCCCCGGTCACTATGCAGCATGGGCCTGCTGCCCGATGCCGCTTGTATCGCCTTGTTGACGGTTTGAAACACGAGGCCATTATTGTTGGAGTGCCCGAAAACGTAAGAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2728802-2727881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019717.1 Paenibacillus larvae subsp. larvae strain Eric_V chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2728801 32 100.0 37 ................................ AGTTAATTAATTGGTAAAAAGCTTATTAAGTTATCAT 2728732 32 100.0 36 ................................ TTGTGCCCTGCAGTCCTCTGCCATCCTTCGCACATC 2728664 32 100.0 33 ................................ CAATTGCTTGATTTCCAACTTGATTTCTTTCTC 2728599 32 100.0 36 ................................ CTGTACAGCGGCCTCTATGTCTGCTTGTACCTGTCC 2728531 32 100.0 37 ................................ TCCTGCTGGAATCTCCCATGGAAATTCAAACGATCCC 2728462 32 100.0 37 ................................ GTCGTATCCTATTTTGTGTTTTTTTGGTGCTCTTGCA 2728393 32 100.0 38 ................................ ATGAACGAAAAGGGCGAGTGCTATCCGACTCAGTGGCA 2728323 32 100.0 36 ................................ AAACTGGAAGTTTGAAACCATTCAAGAGGGTCGGTG 2728255 32 100.0 37 ................................ TTTGGCAACGCTAAGTATCCGATTGCCGTGTATTGCT 2728186 32 100.0 36 ................................ GCCAAGTATCATTTTTTCTGTGTCGGTTAGTTCCGG 2728118 32 100.0 37 ................................ ACGGAGTGATTCTGAGTCTATCAATCTATCAATCATT 2728049 32 100.0 34 ................................ AAATTGTATTATACTGATCATTAGATCAAAGTTT 2727983 32 100.0 38 ................................ TATAGGTGTCACAATACCAGTCGTATCGTAAATTTCTA 2727913 32 87.5 0 .........T.C........A..........C | A [2727895] ========== ====== ====== ====== ================================ ====================================== ================== 14 32 99.1 36 GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Left flank : ATGGAAGTAGGTGACAAGGTTGCTGGTTTTAATAACTTACGATGTATGTACGACCAATAGTGATGGGCAAAGAAGGTTACGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGGGTTCAGAACTCTGTCTTTGAGTGTAATGTAGATGCAGCTCAATTTGCCAGTCTAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGCTTTTATCAATTAGGAAATAATTATAAGAACAAAGTTGAGCACATTGGTGTGAAAGAATCCATTGACTTGGAAGAACCATTAATTTTCTAGTGTGGATGCCTGGTGCGAATGTGAAGTGCACATAAAATTCCTGAGGTATTCGCACCATGTTTTTACCATGTATATCCACTTTTTTGTCTATAGGCATTTTGAGATGCATTCAAACTGAGCAAAAAAATCATTTTTTTAAAAGATGTGATCAAAATAGGTTTAATTTTGAATGTTTCTCTTAATTTTCGCA # Right flank : TTCCGATAAATCCTACTCAAAATGCTCTTTTTGGTTGTATTTGATTTTACTTAAAATGGACCGGCCTTGCCTAAAATAGGTTGCTTCAGTTTTCTGTTTTATCTCAGATCGAGCCGGCCACTTATGCTAGAAAAACGTTTTCACCTGAAGGGAAATTTATCAATTCAACATAAATCTTGAAAGACCTAAGTAGGGGATAGGACATGGTCTACAAACTGTTTCACAAATTATTATTTTGGAAAGAAAAAAGCCGAATAATCAGTTCCCCACTTTTACAACTCAAAGAACAAACCCGTCATATCCTTTTATACCTACAGTTTGAATAGCAGTTGAATCTATATGTGACTCTTCATATAACAAATCAATAAATTGACGAACCTCATGCACATTTATGTCATCACTGTTATTCTCAATTACATCTTCATTGTGTACATTATCCCCAATAATTAATAACCGTACCTGGTCTGGAAAGCCAAGGGCCCATTTCAGATAGTAGGGGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2743029-2740507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019717.1 Paenibacillus larvae subsp. larvae strain Eric_V chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2743028 32 100.0 34 ................................ CGATAACTATTGAAGAAGCTATAGAAGATGTACA 2742962 32 100.0 37 ................................ TTCTTTCGATACAATTGTAACCGCTCCATAGTGCATG 2742893 32 100.0 33 ................................ AGTTGATAGCGTTCACCTGCTTGAAGCTCCTTC 2742828 32 100.0 33 ................................ AGTTGATAGCGTTCACCTGCTTGAAGCTCCTTC 2742763 32 100.0 36 ................................ ACTCAAGGGCTCATTTCGTGAGTTTGCACATTTGAT 2742695 32 100.0 38 ................................ CTTATCCAATTAAACCACCCCTAATCTATTGTTATAGT 2742625 32 100.0 37 ................................ GGCATTAGACACAGCATCCCAATGCAAAGTAACCTGA 2742556 32 100.0 34 ................................ TCGCTATCCAAGTGCGGTATTTGCGAGTGTCGGC 2742490 32 100.0 37 ................................ TGCATTCCTCCGGCGTAAGGTGACCCTCACAGTCGGA 2742421 32 100.0 34 ................................ TCGCTATCCAAGTGCGGTATTTGCGAGTGTCGGC 2742355 32 100.0 35 ................................ TTTAGTCTTTCGGATATCTCAGAAAGGGAAAGCCC 2742288 32 100.0 34 ................................ TGTAATGTGCTGAGAATCCGATCTAGGGTATGAA 2742222 32 100.0 38 ................................ AATGTCCAGAGCCGGGGGTATTCCTTTACTTATGTGCT 2742152 32 100.0 38 ................................ AATTTCCCTTTGCAGGTGGAATAAGTTTTGTTGTGACA 2742082 32 100.0 34 ................................ CTGCTGCACAACCAATTAAATCCAAAGCCAAAGA 2742016 32 100.0 38 ................................ AATGTCCAGAGCCGGGGGTATTCCTTTACTTATGTGCT 2741946 32 100.0 38 ................................ AATTTCCCTTTGCAGGTGGAATAAGTTTTGTTGTGACA 2741876 32 100.0 34 ................................ CTGCTGCACAACCAATTAAATCCAAAGCCAAAGA 2741810 32 100.0 33 ................................ AGCAATAGAAAAGGAGGCCTTCTTAAATCAGGA 2741745 32 100.0 33 ................................ TGTTTCCATGAATGCCCCCATGTGGTCAAGCAC 2741680 32 100.0 34 ................................ ACTTCCCGTCAATATACGTAGGCCATCACTCTCA 2741614 32 96.9 36 ...........................A.... TCCAGTCCGGAGCTTATGTATTAGCCAGTTTAGCTC 2741546 32 100.0 34 ................................ TCCAATTACCGGACAATGGCCAAGAAAAAAGAAA 2741480 32 100.0 36 ................................ TTGATGGTGCTTTTTGTTTTGACGATAGATTAACTT 2741412 32 96.9 33 ...........................A.... TGCTTTGAGCTTTTGATACACTTCTGGTACTAC 2741347 32 100.0 38 ................................ ATGCGTAATCTTGTCGGCAGGAAACTCAGGTTTTGACG 2741277 32 100.0 35 ................................ CCCCGTTTCATTACCTCTCGTCCTTCCGCAATACG 2741210 32 100.0 35 ................................ TTCGGGAATACCCCCTTGCATCATGCTTTCGTTGA 2741143 32 100.0 37 ................................ AGCAGTTACGTTATGCAAAACGATTTTTAGATCAGGA 2741074 32 100.0 35 ................................ TCCGGCTTGTTGGTTTATGTATCTCTTGTTGTTAC 2741007 32 100.0 35 ................................ AGGATATAGCGCTGTCGGCAGTGACTCCGTCACAT 2740940 32 100.0 34 ................................ ATTGTAGACACCAACATCGGCAAAAGCAACTGGA 2740874 32 100.0 37 ................................ ATCTGCGTAAGCTGGCAAAGGTACTTGAAGACAGTGC 2740805 32 100.0 37 ................................ TCCTAAGCCAGGATAAGATTGTTCCTCGAATTGCTTC 2740736 32 100.0 33 ................................ ATATTAAAGATGAGTATCTTTTTTGATTTCCCT 2740671 32 100.0 34 ................................ TATTAATGAACTGGTAATACTCGAAGTGCTCCAA 2740605 32 100.0 35 ................................ CTTTGCTTGTGGGTATAAATAAAGACCGAGAGCAA 2740538 32 93.8 0 ..................A............C | ========== ====== ====== ====== ================================ ====================================== ================== 38 32 99.7 35 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : GGAAATACACGCACCAGTTCGCAACATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCCAGGAGATTCGCACCATTATTTTACCAAAAATATACAGATATCTAGTTGTGGTTATTTTTGATTGCAATTATTTTGAGTTAAAAGATCATTATTTAATCGATTTAATCAAAAAAACATTCTATTTTGATTGATTTGTTCAAATTTCGGG # Right flank : CTGGGCCTTCACCCACCCTAAGGGTGGGGGCTAATTAGTTGAGTCATATACGAATGAGCAGTCCGTTTTTTTACACCATCTAAACATACGAAGAACGGTATGTAGATATAAAAATGAGCTAAGAAAGCTCAAGAACAAATGGCTTGGAAAGATTCAGCACTAAAACAAAATTCTCAAACTCTTCTAAAAATCTCATAAACAAAAGCATCCTCACCGACATTACTTCCACTCTTTTTGGAACGTTTTTTATGTATTCCCATAAGGGCGTCAAAGCATCAGCGAAAGAGGCAGAAACCTTAAAGTCAGCAGTGGGCGGACCGTTTTCTAAGGCAAAAATTTGAGGGACCTATGTCTCTTAGAAGAGCTGTTATCAGTAGGAGGAGTGGATGCCAATGCGCTCGGAGTACCGGCTGACCAAATATCGCACATTCCTAAATTTTATAAAAATTACTCCCTATTAATTGATCTTTATTTTTTTGGATTTACTTCTTGGCGACAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2750346-2749774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019717.1 Paenibacillus larvae subsp. larvae strain Eric_V chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2750345 32 100.0 37 ................................ AGATAAAGATAAAAAACTTATTAAAAGGTTTATGACA 2750276 32 100.0 34 ................................ TCTTTCCTCTGTCTGATCCGGTTTTTTTGTCATC 2750210 32 100.0 34 ................................ AAAAACCCCGATTATGTGGCGGCCGTCCGCACGC 2750144 32 100.0 34 ................................ AATATCAGCCATAGTTAAAGACTTAGTTTCAGTT 2750078 32 100.0 38 ................................ TTTACAAACGCCAAGCGTTGCTCGTAGGTGTTGGGAGC 2750008 32 100.0 34 ................................ TATAACTCAAGAGAGTGGCGAGCTTTAAGAGTTG 2749942 32 100.0 38 ................................ ACAAAAAAGCAAGCTGGGATCGTAGGGTTTGCTTTACT 2749872 32 96.9 35 ..................A............. TTTGTCATCCGCAAGAAAAAGGAGGCGTAAGGCGT 2749805 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 99.7 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTCAGAGGTTTTGGAGGTCTTATGAATGTTCCCAAAAAGCTTTTTTATATATTGCAATACCTAGTTCTTTTTATAAAAAAGCATTATCGACTTCATTTTTCAAAAAAAATGAGATTTTTCAGTGACGAATTTACTTATTACCTACTAACATTTGCAGAATGTTAAGCACATGCTTCACTTTGTCAGAAACTTTTTTTAAATGCGCGTTCCCTTTAACCATTTTTTGGTATCCACTATTCTTGAAATATGTTCTTCTTCTCCTTTTATTCATCTCCTACCTTTATAAAGTGAAGGAATTCAAAATCCTGCCTATTAGAACATGGATGCATAAAGTGTTTATTAAAGATGCGTTATTTGAGTTAAATGGAATCATCCTGATTCTAATCAACTTAGTCATATTATTAGAAATTAAGGTTTTAGCTATTCTCCTGTTGCTTTTTATTTCTCAGGCTTGGATGGGCTTTTTCCAGAGCGCGACGTGCGTCAATACGAGTCAAT # Right flank : CACTGGCCGATCTAAACGAGGTATTCCGGGAGCGTCGCGTCGCATCCTACGCGGATGCAAAGGCCTACTTTTTAATCACTACCAACTATGGCGTTTCAAGCAATCGGACGGGACAACGCCAAAAGGCATCTAATTTTATGGTATTTCCCCCTTAAGGTAGACAGGTTAAAAAAAGGGGAAACATTAAGCCAGCACCGACAGGAGAATATCTACCTAACCATTCAAGGGGTTCAGCAGGAAGAGTCATTCAGCATTCAGTTATTGTGTGAAATCGCAAAAATTCCAATTTTACAATTACGAGTGACTACAAACCAAATTAGTCTTAGTCCAATGGAGTCCAGGACCAAGTCCGTTTAACGTTTTTTTATTATTTATACTGTCTACTTGACAGGGGCTGTTCATTGGACAGCCCTTTTTCCAATAGTTCGAAGGAGTTCGTTACTCATTATAATACCTAAGTAGTATTGAAAAAGTTAGATATATGTAACAATAAAGGATAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3875279-3874725 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019717.1 Paenibacillus larvae subsp. larvae strain Eric_V chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3875278 30 100.0 34 .............................. TATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT 3875214 30 100.0 35 .............................. GTAGCTTTTGGAGATAAGAAAGCTTCGTTTCTTGC 3875149 30 100.0 36 .............................. TGCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG 3875083 30 100.0 36 .............................. TTCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC 3875017 30 100.0 36 .............................. TCTTGTACGGCGATTAGTCTCTTTCGGTCAGCTTCC 3874951 30 100.0 36 .............................. TGGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG 3874885 30 96.7 36 ................A............. GTGTTACAATGGAGCCGCAAAAAGAACATGTATGCA 3874819 30 93.3 35 ..............T.A............. TAATTACTGTATAAAGCACAACCCGAACGCAATTG 3874754 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 98.5 36 GTTTGACAGTAACACATGGTGTATTGAAAC # Left flank : ATTTATGCCATTTTTGGAGAAAGACCGGAGGTAGAAGGAATATGGCTAAAAATTATCATTACGTCATCCTTGTGTACGATATTGGTGAAAAACGGGTGGGCAAAGTATTCAAAATATGTAAGAGATACCTTGTTCACTTTCAGAAATCCGTATTTCGGGGCGAAATTACGCCCTCCAATTTACTGAAATTGAGAAACGATTTGAAGAAGGTTATAGATAAGGATAGCGACTTTATCGCTATTTTTAAAATGACGGGTGACTATGTATTTGATGAAGAAGTTATCGGTGTAAGATCGAACAATCAGGAGTCTTTACTCCTCTAATTTTCCCAACCTCTTTTGCACTATTACTTGGCTTCAGTCTTAGAACCATAAGGGACTTTCACTCATTTAGGTTCGTTTCCTTTTTAAATCCATTTCGGTTGGGAAAATTTTGCGAAACCCTTGGTACTGTAGTAAAATATGCACATATGGCTTTTGGAAAAGCTTGATTTTATTAGG # Right flank : GGCTGTGGGTGAGCCTGTCAATCACATACTTTGGACTTCTGTCAATAGATTGGACACCTAAAACCGAGAGAATTATGCAGCTAAACAGATCATATGTTCGCATTGATTGGGCGTAAGATACCCGATAGAGGAATGGATTCTTTTTCCATTGTAAAAGCACGTAATGTATTCAAAAATCTTCTCCTTGGCTTCTTTCCTGGTTTTGAATTTGTGCAGGTAAACGAGTTCTTTTTTCAGCACGCTGTGGAACGATTCAATACAGGCGTTATCGTAGCAATTGCCCTTACGGCTCATGCTGCCTGTCATGCCGTATTGTCGTAGCTGCGTTTGATAGTCCGAGGACGCATACTGGCTACCGCGATCCGAATGATGCAACACGGTTCCTTTCGGCCGTTGATGGCGATACGCCTGATCCAACGCCCTCGGCAGAGCTCCCTGGTCATTCGCTCGCCCATGTGAAACCCGACGATCTTACGTGTGCACAGGTCTTCCAGACTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Alternate repeat : GTTTGACAGTAACACAAGGTGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 6 3885784-3884829 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019717.1 Paenibacillus larvae subsp. larvae strain Eric_V chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3885783 30 100.0 36 .............................. AGCTGTGTAATATCTTTTGCTTCTTGTATGAGCCCC 3885717 30 100.0 36 .............................. TTGCGATAGCGTGTTCTAGGTCAATTCCATAGTATC 3885651 30 100.0 36 .............................. TAGTAAATCTCGGTATAATGTCTCCCGTCTCTGTGT 3885585 30 100.0 36 .............................. TGTTGGAGAATGTGGAGGAGTTTACGACATGGGGAC 3885519 30 100.0 36 .............................. TGGGGTTTAGTGGAACGTTTGCCTACTTAAAAGCCG 3885453 30 100.0 36 .............................. GGAAAAGTATCAGGCAGACGAATACCGAATCATTCC 3885387 30 100.0 36 .............................. TCCTGGTAGACTTTGTACGCCACTGTACTCCAAGTA 3885321 30 100.0 36 .............................. TCCTCTTACGGGTGCGTTGTATCTCATCGAAACTTT 3885255 30 100.0 36 .............................. TACGAGAGGGAAGCTGATTCCCCTAAATAACGTTAA 3885189 30 100.0 36 .............................. GAAATGATGGATTCGGAATATGGAGACTATGAGGAA 3885123 30 100.0 36 .............................. ATAACATTCGGGTTGTTTCTTCATTGTAGTACTTCC 3885057 30 100.0 36 .............................. GCAGCAGGCATCCGCTTGCATCTGGCGGCATGAGGA 3884991 30 100.0 36 .............................. CAGCATTGATCGGTGCAGCGACAAGGGCCCCAAGCC 3884925 30 100.0 37 .............................. AGTTCTTCCATTTCCCAATACTCTTCCGTTTCCGTAT 3884858 30 83.3 0 ......A........A....A.......CT | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 98.9 36 GTTTGATAGTAACACGAGGTGTATTGAAAC # Left flank : ACTCTTTTACTCATCGATGTAGCATATTGGATGTTAGCTCGTAACGTCTTGCCACGGCTGCTTTGTTTCTGGTTTCCAGAGCTTCCTTTACAACCTGTACCTTAAACTCGTTGGAATATTTCGTCCGTCTCATTTATCATCCTACCCTATTACTTGTAGTATAAACAAAACACACTTTTATTGTCCAAGTTCATTAGGGGGCTTTAGAACTAGCTTCTAAACATGGTAAATGCTAAGAGATGTATAGATTTTTATTAATTCCTTTTAAGAACTCATTACATATATTCAAAAATAAGTAGAAGAATAAAAAGCTTTATCTCTAATTTTCCCAACCTCTTTTACAGTGGTATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TCGCAAGCTGTCTATCTCCACTTGGAGAGCACGGCTTGATAGTGCCATAAAAATAAATAGGCCATTCCCATTGGGACTGGCCTATTTTACTTACATTAATAGAGTAAATCTCTTTAAACAAATAAATAATGAAAATTTTATTTACAAATCAATTTTGTTTGGTATAATTTAGGGGGTTGATAATTAGAAGAACGTCCTACGTTACGGTTAGAGTTTAAGCAAATGAATAAATTTAAATGCGCCTTGCGCTAGGGTCCTCTTATTTTTTGATGTTTACTGTACTAGTGTACTATTTATTGGAATCCCTTTCAATACTAAAAATTTCTCAACAAAGGAGGTGAAAGAGATGTTTTACGAACTTAAAGCAACCGTGCTATTAAAACAAGAGGTCCATTACTTGCATGTACCGGAGCGAATTGGTTCCTGGATTAGCCGGGCGGCTCTAAATGATCCGGTATTAAAGCAGGAGCATTACTCGACAGGGTATAAGCACATTGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATAGTAACACGAGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //