Array 1 28-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNRF01000009.1 Halomonas endophytica strain MC28 559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 28 33 100.0 37 ................................. TGGTAGCAGGGAATTCAGTTGCCCAGGTGGCTATTGC 98 33 100.0 34 ................................. AGCCGAGAGCGAGATGATCAGTACCAGCACAGCG 165 33 100.0 33 ................................. ATACCGCCAAGGATGCGCTGGCAGCCGGGCTGG 231 32 87.9 0 .......T......-..C....T.......... | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 97.0 35 GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Left flank : CGGGCATGGGTAGTGCGTGGTGGGCGAG # Right flank : CCTGCCGGCGCCAGCGAGGGCTGTGGCATGCGGGCGCATGAGTGCCTAGCTGGAGCAGGTGGTGGAGGCGCCGGACGAGTTGACGCAGCTTGCGGTGCGTTCGCAGCACATGCAGCGTTGGCAGGTCCCCCGCAACGAGTACCGTCGCGACCAGGGCAAGCGGGCTGGGCCTATCTCGCTCATGCTCGAGCTCGAGCCGCGCAACACCGACCAAGCCGTGCCCTATTGATAAGTGCGGGGTTATTGGGGTTATTAGAATTTGCACATTTCTCATAAGAGTTGCTATAACCCCATTAACAGACAGAAAGGAGCTGGAGGTGGCAAGCCCGTCACCATCACAGTGCCTCACCCGAAGAAGGATGTGAAAATAGGGGTGGAAAAGGCGATCAGGAAACAGGCTGGCCTCGCGTGAGGTCGGCGCTTGGCTTGCCACCTTCGGCTCAATAGGAGGGATAACCATGCACTACCCCATCGCTATCGAGATCGGCGACGAGCAGCAC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 1054-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNRF01000007.1 Halomonas endophytica strain MC28 586, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1053 33 100.0 35 ................................. GTCCATCGCAACAACCAAGCCGTTGTCCCGCTCGG 985 33 100.0 34 ................................. AGTTCATCTCGGGTAGGAGCGATCATACCCTGGT 918 33 100.0 35 ................................. CAATCCCAGACGCGCTCCCCAGGGTTGGCCAGCGG 850 33 100.0 35 ................................. TCGCCAGGCGCTATCGTTGAGGCCGTCGAGCTCGA 782 33 100.0 34 ................................. GTCATCGACGCCGGCGAGCCGTTCATCGTGCCTA 715 33 100.0 36 ................................. GCCCCGAGATGCTGCAGGGGATAAGCCAGCCAGCAG 646 33 100.0 34 ................................. ACCGAAGGATTTCCGCCGCAACGGAGACTTGATC 579 33 100.0 35 ................................. GCCGCCGAGTACATGGTCGTGCGCGGCATCAACGA 511 33 100.0 36 ................................. TGATGATAACCACAGCCCGGCCAATCGCCGGGCTTC 442 33 100.0 36 ................................. AGCGCGACAGCCATGTACCGGGTGCGGATCTACGGC 373 33 100.0 34 ................................. GCTTGCCGGCCTCCTCCCATGCGCGGGCCATCTC 306 33 100.0 35 ................................. CATTCGTGCGCCGCGATTCGGCGGGGCCTGGGACA 238 33 100.0 35 ................................. TGGACTTTCCTGCGACTGAACGCCAGCGGGGCCAG 170 33 100.0 35 ................................. GGCCAGTTAACCAACGCCTGGCGCGCAGGCGCCCG 102 33 100.0 35 ................................. TCTATCACCCTGTCATTTGCCAAGCGCACGGACAA 34 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 100.0 35 GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Left flank : TGATAAGGAGAGTACAGCGATGATGGTTTTGGTCAGCTACGATGTCAGTACTTCTTCCGATGGTGGTGAGAGACGACTGCGCCGGGTCGCCAAGGCATGCCGTGATGTCGGACAGCGAGTGCAATTCTCGGTGTTCGAGATCGAGGTCGACCCCGATCAATGGGTGCGTCTGCGACAGCGCTTGATCGACCTGATTGACGATGAGGTCGACAGCCTGCGCTTCTACTTCCTGGGCCGGAACTGGAAGAACCGTATCGAGCATATTGGCGCGAAGCCCGCCTTGGATATGAACGGTCCCCTCGTTTTCTAGTTTTTTTGTTGCTCTGCGAACCACAAGTGTCCTGCACTTCCCCGGCAGGTTCGCAGCTCTTTAACAATATGATTTCTTTACTCTTCTTAAGCCTGGTCTTGGGAAACAGTGAATTTTCACTTCCTAAATGATCTAATTCGCTGAGCTGTGGATATTTCCCTTTACTCATCAAAGCGTTATAAGGGGAACA # Right flank : CT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //