Array 1 12416-6927 **** Predicted by CRISPRDetect 2.4 *** >NZ_BILZ01000012.1 Paenibacillus kobensis NBRC 15729 PKO01S_CON000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 12415 31 100.0 35 ............................... TTTTTTCATACGATATGCCTGAAGAACGTTGTCCG 12349 31 100.0 36 ............................... TTATAAGCCCACTTTGCTGCAGTAGCCGTCTTCCCG 12282 31 100.0 36 ............................... CGTGATTTTATGGATAACACGAACTCATCTGGTCCG 12215 31 100.0 36 ............................... GTCCGCTCTGTTGAATTGGGGAAGGTGAGAATATGG 12148 31 100.0 36 ............................... TCCTGCAGCGTTCGTAGGTCATTAATCACGTCCGGG 12081 31 100.0 35 ............................... TATCGGCTGCCCCTCCAACGGTAGCCAGGCCCGTG 12015 31 100.0 34 ............................... TTTAATATATCCATAACGAAACGCGTTAAACGAG 11950 31 100.0 37 ............................... GCCCATTCATCACGCTCTTTAATCCGGCCCGTCCGTG 11882 31 100.0 34 ............................... CTCATTTTGAACGCCCTATTACGTAAGCTTTGGG 11817 31 100.0 35 ............................... TGTTGAACGGTTGATTACGTACGGGTTAAAAATCG 11751 31 100.0 34 ............................... TAATGGACTGATCCCACTATGTAAGAAGCTATTG 11686 31 100.0 36 ............................... TGGAGGTGCAGACGAATTACTAGAAAGCGAATTGGG 11619 31 100.0 36 ............................... GGCACCGCTTGCATGAGACCGAGCATAATCGTCTTG 11552 31 100.0 34 ............................... GTCATTGATTGGTTGTTGATCGATCCGAAATCGG 11487 31 100.0 37 ............................... AACATTTGAAGAGCTATGTGGAACGCATGATGTAGAG 11419 31 100.0 36 ............................... AAAATCGTGCATTGCGTGCCGCCAATCTTGCGTTTG 11352 31 100.0 38 ............................... TCTTCATCGGTTATCGTGTATACACGTTGACCAGTTAG 11283 31 100.0 34 ............................... TCTAGCTCAATTTGAGCTAATTCGGCGTCAACGG 11218 31 100.0 35 ............................... TTTGTCGTAGGCCGTGGAATCGAAGACGACTGGCG 11152 31 100.0 35 ............................... GGTTTACGAAGGCCAGCTAATCGGTGTAACGGCAG 11086 31 100.0 37 ............................... AGCCATACGAGCTCTCGCCCACAACGCGGACAGATCG 11018 31 100.0 35 ............................... TGACCAGGACGAAAATACTGGCCCGACCGAAGAAG 10952 31 100.0 36 ............................... AATATCGCCACGGACAAAGACGACTTAGATGCATTG 10885 31 100.0 34 ............................... CAAACTACGGTACTGGCTTAATCGCCGGGACTTG 10820 31 100.0 36 ............................... AAAAACACAAACGTTGATACCTATAAGAAACTCATG 10753 31 100.0 36 ............................... GTGATTACGGCCAGAAGGAACGCGAAACGGTCGTGG 10686 31 100.0 37 ............................... GACTCAGCAATTTTGCAGAGTCCGAATACGTGAACCG 10618 31 100.0 35 ............................... CCTTGTGCTTGAGAAACACAGAATAGGCGGTGGCG 10552 31 100.0 36 ............................... ATGTGATGGGGTTTGCTCATGCATGCTCAGGTGGAG 10485 31 100.0 37 ............................... TGACTGGCATTGACCGGCACTTGCCGATAGATCGGGG 10417 31 100.0 36 ............................... AGATAGTCAATCGCCGTCTTGTACTTGGCTGTGCCG 10350 31 100.0 35 ............................... TATCAACGGTTGGATAGGGATCACCCTCGCTGACG 10284 31 100.0 34 ............................... CTCTGTCCTAACCTCTGGCCGCCCCACGCCCTTG 10219 31 100.0 35 ............................... CGCATCCTTTACCGGGTCGTCTACGATGGAGATGG 10153 31 100.0 34 ............................... GCTCAATTTCTCCTTGGAAATGTCCAGTACATGG 10088 31 100.0 36 ............................... CACGGGTTAACCACGCCGCCGTTGCCGCCGTTGCCG 10021 31 100.0 36 ............................... GATCCACCATCGCTGGCAACTGTGACGGATGCTCTG 9954 31 100.0 36 ............................... GTTTATTTTCTGTTCGATCAATCTAACCTCTTTTAG 9887 31 100.0 34 ............................... TGGAGGGTGCTTACCACAAGTTGTTTCTGTACCG 9822 31 100.0 35 ............................... GCAAACTGTTGGTGATTGCGGACGTCATGAAGCAG 9756 31 100.0 36 ............................... GTCTTTAATTAGCCCTTGTAACTTTGCATAAACCCG 9689 31 100.0 36 ............................... GGCTTAAGGTCGCTGGTACGGGGCCAGTAACAATAG 9622 31 100.0 36 ............................... CTCATACTCTCTATGCAGCGGCCAGATGCCGACGTG 9555 31 100.0 34 ............................... GAAACAGAAGAATGTATCTATAAGTTTAAGGGCG 9490 31 100.0 35 ............................... CCTTCAAGTGGCGGTCAAGCTTGGGCGACTATTCG 9424 31 100.0 36 ............................... TCCCTTCTCTTCTGACTTATCGTTGGTTATCAAATG 9357 31 100.0 35 ............................... ATGTAGGGCCTTGCGGACAGCGGGCTTAATCTCGG 9291 31 100.0 36 ............................... TTACACGACTGCTTACGCCGAAACCGTCGAGGTTAG 9224 31 100.0 37 ............................... GTCTTGTGCCTCTGCTTCGTCGTCCGGATCCGCACTG 9156 31 100.0 35 ............................... CATTGTCCAGCAGCGCGAACCGGATTGAGAAGCCG 9090 31 100.0 35 ............................... AAGACTTGCGGCAAGAAACGGATTCGCTGTTCGCG 9024 31 100.0 36 ............................... TTGATGAACAGGCCCCACGTAATGGCCAATATAACG 8957 31 100.0 34 ............................... CCTTTTGAAAACGACAATCGAGCCCGCTGACTAG 8892 31 100.0 36 ............................... CGCAGATAAACGCTCGAAAGGTTAAAGAGATCAGTG 8825 31 100.0 38 ............................... AGCGTACCGGAGGTGAATATTCAGCGGCTTTGATGGGG 8756 31 100.0 35 ............................... TGGTTACTGCCGGCCCCTCAGGGAATGTCAGCTTG 8690 31 100.0 35 ............................... TTTCTTAAATCGCATTTCCGTCCTAGTCCATTCCG 8624 31 100.0 37 ............................... TGTCTCGGACAGCTTTGTCGTCTCGAGCAGCTGCACG 8556 31 100.0 35 ............................... CAATCCGTATTGTCTGATCATTAATTGCAACCATG 8490 31 100.0 35 ............................... TAACCATGATTAATCGAATTCACGACCAGAAATCG 8424 31 100.0 35 ............................... TTTTGATGATGGGAATATCACATCGGTAGATTGGG 8358 31 100.0 35 ............................... CTCAGTCCAACCTTTACGAATTCGTTGGTGGAACG 8292 31 100.0 36 ............................... ACCAGCTCCTGGCGGATCCAAACAGCGTCTATTTCG 8225 31 100.0 34 ............................... TGATGTACCCTGATGAGTGCTTCCCCGAACGGAG 8160 31 96.8 36 ...........A................... CGCCAGCGCGAGTCTTCCTGGCTGTAGTAAACGAGG 8093 31 100.0 35 ............................... GATACAGCACAAAGTCCATCACGTTTTGAGCCTGG 8027 31 100.0 36 ............................... TCGATCCGTGGCACCAGTGCGAGTCGGACTGTCCAG 7960 31 100.0 36 ............................... TTGGATAACGGTTGTTGGGCGCAAGAAACATGCGAG 7893 31 100.0 35 ............................... GACTCGATGGCGGCATTCGCCGCAAAACCATAATG 7827 31 96.8 37 .......A....................... GTTAATCTGCCAATCAGTATCGAACGGTTCAAAGTCG 7759 31 100.0 37 ............................... AATCAATCTGACCTAATAGCAGCCGTTGAAGAGTACG 7691 31 100.0 35 ............................... GCGGAAGCAGTCACTTAAAGTTAGATCACCACACG 7625 31 96.8 35 ........T...................... GTTCTTGCAGCTGGAGCGCAGTGTAGATGTACTGG 7559 31 100.0 34 ............................... CATGAGCGAAGGATGCTCGCTTGCGTCTCGCCTG 7494 31 100.0 36 ............................... CTCAACCGACACTCCGATCTGCGGTGCAACTACCTG 7427 31 100.0 35 ............................... CGCTGACCGTGTTTATGGAAAGACCGGATTTATAG 7361 31 100.0 36 ............................... CCGAAAAACATGTTTGTTCCGTCCACCAACTCGAAG 7294 31 96.8 34 ...........................G... ACGCGCTAGTACGACTTCGAGTACCTGATCTGTG 7229 31 96.8 36 .......T....................... ATGAAGCCAATCCCGGCAAGCGGATACATGGATATG 7162 31 96.8 39 ...........A................... GACGGAAGCCTTCGGGGAAGCGTACAAAAGCACGAAGTG 7092 31 93.5 36 A...........T.................. TCGTACGACCCTAACTCCGATCCGGTCTATCAGGCG 7025 31 90.3 37 ............TA..A.............. TTGATCGGCTTGGCGCCGAGCCCGTTGACGCTAAGAG 6957 31 90.3 0 .......A.G..T.................. | ========== ====== ====== ====== =============================== ======================================= ================== 83 31 99.5 36 TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Left flank : GAGTATCCTCCTTTCTTATGGAAGTAGGTGAAGAAAGTGCTCGTGTTAGTTACTTATGATGTAAGCACAGTAAGTAGTGAAGGCCAGCGCAGATTACGTCAGGTATCGAAGATTTGCCAAAACTACGGACAGCGTGTGCAAAACTCGGTATTTGAATGCATTGTGGACTCCGCCCAATTCGCCGCATTAAAGTTTAAACTCCTTGATATCATTGACCCGCAACAGGATAGCCTCCGATTTTATCAGCTTGGCAATAAGCACAAGACGAAGGTAGAGCATCACGGTTTGAAATCATCTCTTGATCTTGAAGCACCTTTAATCTTGTAGTGCGAACCGATGGTGCGAATGTACAGCTCACATACTTTCCCAGGGGCATTCGCACCGAAATATCTATCAACAATTTCCATTTAGACTAACGCTATAACGCTTTTCTATGCTGTGAGGTTGTTGTTGTAATAAAAATTTAACGATTTTTGGCCTGTTGTTGCTTAAAATCGCTG # Right flank : GGGATAGTACAGGAAGCCCGTTAGCTACGTTAGAGGGTCGCACCCCGTGCAGGCCCCATCAACTTCACCAGCTTCGCCTCTGTCGAGCTCTCCGGTGCTGGCGTGTAAATGCTGCACCGCAGATCGGACCCGCCCTGCAGTTGAAGCGAAGTAAGATGGAACAACATCTTGCCCGCCTTTGCATGCCGGAACTCCAAGACGACTTCAGGCGCCGTGCTTACCTGGCTGTGCTCCCACAGCTCCTGAAAATCGGGATGCAGCTCCGTCATCTCCTTCAGAAACCGATCGTACCAATTGTCTTCGACATATTGACCGTAATACGCGCGGAAGATCGACAGGTAGCCGCTGGCGAATTCCTTCCAGTTGACGGCAAGTCTTCTAAGCTCCTGCCGGGTGAACAGCACCCTGATCATGTTCCGCTCTTCCTCAGGCACTTGCGAGAAGTCCAGAAAGACATGCGAGGCAGCCTCGTTCCATCCGACGATCTGGCAGCGGCGGTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22648-21035 **** Predicted by CRISPRDetect 2.4 *** >NZ_BILZ01000012.1 Paenibacillus kobensis NBRC 15729 PKO01S_CON000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 22647 32 100.0 34 ................................ ATCGCGAATCGGTTGAATGTTGTAGCCGACAACC 22581 32 100.0 34 ................................ AAACAACTCCTGTATTAATGCTTAATCCCAATTT 22515 32 100.0 35 ................................ TTGTAGATAAACGGGACTTGTTTCGATGTTTTAGG 22448 32 100.0 33 ................................ TGTATATAGGGGGTGTCACGGGTGGCGCTGACC 22383 32 100.0 34 ................................ CCCCGTAAATGTAATGCCAGCATAGGCGCGGAAT 22317 32 100.0 34 ................................ ATTCGTAATCTCGAATTCATAAGCATCATACGGA 22251 32 100.0 34 ................................ GAACCTGCGATACCCTCGTATGAGCTGCCTCGTC 22185 32 100.0 33 ................................ AACTCGTCGTGCTGGTCCTCGATCATCTCAATG 22120 32 100.0 35 ................................ GGCCTAGAGCGAACAGCCGCAAGCGCAACGCAGGC 22053 32 100.0 35 ................................ CTTTCCGCCACCGCGTTCGTCCGAGCTACCCTCGA 21986 32 96.9 35 ....C........................... GAACGAGCTGCTGCGAACTTGCATCGTTACATCCG 21919 32 96.9 34 ....C........................... TGTCAACGTACATATGCGCAACGGCTGGCATGTC 21853 32 96.9 34 ....C........................... ACGGTCCCCGTAACCAACATCCACAACGACATTA 21787 32 96.9 34 ....C........................... ATGGTCATTTTTTTGAACCGAACTGTAACAATGA 21721 32 93.8 35 ....C...........T............... TGCAGGTTCGGGTTATTGGACGAGAATCGACCCGT 21654 32 93.8 29 ....C...............A........... TATCTCTCGCCCGTGCCTGTTCTACATAC 21593 32 90.6 34 ....C...AT...................... GCCGTATTCGTAATCAACACGCCGTCCAAAAAAA 21527 32 90.6 35 ....C...AT...................... GCCTTGTACGATCTCGATGAAAAGATGATCCGCCT 21460 32 93.8 33 ....C........................T.. CACAAGGCGCTCCGTTATCGAGCGCAATTTGAT 21395 32 96.9 33 ....C........................... ATGTAAGAGGTGATGCCGAATGGTATTGGTCAG 21330 31 93.8 34 ....C....-...................... ACTCGGCCGGATCGTGTTGTGCATGCCAGCACAT 21265 32 93.8 35 ....C...T....................... CGATGTTCTGGCACATGGTCAGATGGTGGATCGGA 21198 32 96.9 33 ....C........................... CGAAAGTGGATCACGAGCGAAGTAATCCCATCA 21133 32 96.9 35 ....C........................... CGCACTAGCTTGTCCATCCCATCAAATTTCACGTC 21066 32 75.0 0 ....C........C.....A.C......CCCC | ========== ====== ====== ====== ================================ =================================== ================== 25 32 96.1 34 GTCGAACCCCGTGTGGGTGCGTGGATTGAAAT # Left flank : ATCTGTGCGGAGTAGATGCCGCGATCATTCGCCGCCGTTGCACGGCGGGATTTGATGCTGTTCACAACGGACAGCACCGATGTCACGATGATGCCGATGAACAGAATCCAGTGAAATACAACCATTGGTATGCGCAATCCTTTCGTCATCCAGTGTGAAAGACAAGCTTTCCTTATTGTAGCACAAAAGACGTTGGGAATCGCAAAGGAAAGCTGAAATCAAAGTCGAGCTCATGATTGTCATGATTTTGCTCTAGATATACAATGATAGAGGATTGATTCGAACGATTTACTTGATATGTTGAGTCGTTAATATGGAGTGCGAATCGGCGGTGCGAATGTGAAGCTCACATACTCTCCTGAGGGCATTCGCACCAATAAATCAGCTAAAATATTCCTTTTGTTTCGAACCAGGTCACGAGAAAAGACGATTCTCAACTGATTTAGACTGTATTTGAGTAGAAATGAACGATTTTAGAGCCTATATTGGCTAAAATCGTT # Right flank : TTCTCACCGTCCTACCTTGTCTTGGATCGAGTGGCAATGAGGTTGATCGGATAGGTTTTGGAATTGCACCACGTGCGCTTCATTTTCGTAACCTTGTCCGTCAGCGACATCAAATATGCAAATAGGTTTCGAAACCGTGACAAAAATAGAAAGGTGAAGTTACTAGATCAGTAGAAATACATTAAGGAACAGCTGTTCGCTGGCATCTGTAGGTGATGTAGAATGATTTAAGCTCGCTCTAGAACGAATATGAATGGGGGGCTAGAATGAATTATGTGGCTCATGTGCGCGAAAACGACGGAATTGAGCAGTCAGTTGAAGAGCATTTGATTGGAGTCCAAGCGTTAGCTGAAACGTTCGGCGAGAAGATAGGAGTTAAACATCTTGCTGGTCTTGCCGGAATACTTCATGATATGGGCAAATTCACTAATGAATTTCAAACTTACATAAGAGAAGCCGTAAATAATCCGACAGCCCCGCCAAAAAGGGGAAGCGTCGAC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAACCCCGTGTGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA //