Array 1 76707-76245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGZW010000015.1 Klebsiella pneumoniae strain 4KXXI NODE_15_length_111288_cov_22.067799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 76706 28 100.0 33 ............................ CTACGGGTCCCCGCTGGGCTCCGGCGGCAGCGT 76645 28 100.0 33 ............................ TAAGCGTTGATGCGGGAGAAGGTGAGCCGGGGA 76584 28 100.0 33 ............................ CGTAAAAGAGCGGATCGGCTCCTCCGTGCTGAT 76523 28 100.0 33 ............................ TGGTGTACGACACCCGCGATTTACCCGTCAGCC 76462 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 76401 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 76340 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTATCAGCGCTGGCATTCGTTCT 76271 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 8 28 98.2 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACGCACGTGGGGGTGTTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86743-85375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGZW010000015.1 Klebsiella pneumoniae strain 4KXXI NODE_15_length_111288_cov_22.067799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 86742 28 100.0 33 ............................ CAGACCTCCTCTTCTACCTTGACCGCCCTACAG 86681 28 100.0 33 ............................ TAAAAACCCCGCATTATGCGGGGTTCTCTTTAT 86620 27 96.4 33 .....-...................... GAGGAAACGGCAAAACTGGATCAGCTTATCCGC 86560 28 100.0 33 ............................ CGCAGCGCGCCGGGCGATCTCCGGCGTGCCCTC 86499 28 100.0 33 ............................ TGGCGCACGCACAAGGGCGGCGGTTAGATGGGC 86438 28 100.0 33 ............................ CAGCTTCGTGAAGAAGTACGCATCGTCCGGCAT 86377 28 100.0 33 ............................ CAGGTTGGCCATATAGGTCAGGAATGTGCCGCT 86316 28 100.0 33 ............................ TCACCAGGATTACTCGGTCCGGACGGCCAGACA 86255 28 100.0 33 ............................ CCCTACCCCGCGGCGCTGCAGGTAATACGCCTG 86194 28 100.0 33 ............................ CGGGCTTGACGCGGTGCATTTTGACGCGGACGC 86133 28 100.0 33 ............................ TTATGTGTGTGGCGCTGGGGAGGATTGATCCGG 86072 28 100.0 33 ............................ CACCGCGACCGAGGCCGTAAAATCGGCCGTGGG 86011 28 100.0 33 ............................ TGGGATCACCTGCAGGACCTGCGCGTCGTCGCC 85950 28 100.0 33 ............................ TCTGACGGGTCAGAATCTGATGCATCAGTTTTT 85889 28 100.0 33 ............................ ATCCTTCTCGCCTACCGGGCGGAAGCAAAAACG 85828 28 100.0 33 ............................ TGCAGATTTCAGCAGAGTTTCGCCGGGTGTTTC 85767 28 100.0 33 ............................ TGTTGAGCAGCGGGCTGTGTTACTCAACATGCT 85706 28 100.0 33 ............................ CTGGTGCCGGTCGCCACTGCTGCGTGTGATAGT 85645 28 100.0 34 ............................ CATGGTCACGAAGGAGGGGGCCGAGGGAGCAGTG 85583 28 100.0 33 ............................ TTTACAAGGACCGATGAATGAACCCCCTGATCG 85522 28 100.0 33 ............................ CAACTGCGACGCCTGCGAGCATTGCCGCTACTT 85461 27 92.9 33 ........A............-...... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGA 85401 27 82.1 0 ............C.T......C-.A... | ========== ====== ====== ====== ============================ ================================== ================== 23 28 98.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGCACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGTGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTATGGATTTTTCCGCAGCGTTAACTACGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGGCGCGGGCCGGGGAGGCGAGTAGGGTAGACCGGACCTGGTCAGCAGCAAGACAACGGTGGTGAGATGGGGACATACTTTTTCGTTTGATGAATGTGGTGCTGATGCGGAAACCCTGCGGAGTGCAATTGTCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAACTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATCCATATTCATGTGTTATATTTGTTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCAACTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAACCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGCCATTGTCAGATTGTCGGGGAGATTGCTCGGGCGCTTATAGCGTTGTATCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //