Array 1 122-266 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOOK01000125.1 Dickeya dianthicola NCPPB 3534 DDI3534_contig125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 182 28 100.0 33 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTTAGT 243 24 85.7 0 ........................---- | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTCCGAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACAG # Right flank : | # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1608560-1607342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001840.1 Dickeya dianthicola NCPPB 3534 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1608559 32 100.0 33 ................................ CTAACTACTGCCGATGTGTTGAAACTACGCTTC 1608494 32 100.0 34 ................................ ACTCATCACCTGACTTGCTTTCTTACGTGCTCTG 1608428 32 100.0 36 ................................ GTAGTAAGTCATGATAGTCACCTCATTGAGTAAGCC 1608360 32 100.0 34 ................................ GTTCGCTACGCTCTACGTGTCGTGGGTGGTGGGT 1608294 32 100.0 34 ................................ TTCGCAGGACTGATACCCACTGGTATCGCCCATG 1608228 32 100.0 33 ................................ ACCAAGATACGCTGGCCGTGCATCACCTCCTGA 1608163 32 100.0 33 ................................ AAATTAATCGCTGTTAAAGCTATCCCTGCACAG 1608098 32 100.0 35 ................................ AAGTGCATCAGTCTTGTTACCTCCACCCGTTCCCG 1608031 32 100.0 34 ................................ TTCGTCAGTTGCCTGTCCATCTTGATGTCGCCAC 1607965 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 1607900 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 1607833 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 1607767 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 1607701 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 1607635 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 1607569 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 1607503 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 1607438 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 1607372 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3869939-3869370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001840.1 Dickeya dianthicola NCPPB 3534 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3869938 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 3869878 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 3869818 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 3869758 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 3869698 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 3869638 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 3869578 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 3869518 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 3869458 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 3869398 27 89.3 0 .......................-..CG | GG [3869375] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3878654-3881323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001840.1 Dickeya dianthicola NCPPB 3534 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3878654 28 100.0 32 ............................ AGTGCATTGCGGCTGCGTTCATCTGTCATCAG 3878714 28 100.0 32 ............................ ATAGCGTCATCCGTGGCGCTATGTGAGTATTA 3878774 28 100.0 32 ............................ ACATCAGCACATCTTGCGCATTGTACTCTGTA 3878834 28 100.0 32 ............................ GTTTGCTGCCGCATCTGTCGTGACTGCTCAAT 3878894 28 100.0 32 ............................ GTACACAGCATGGCGCGGAAATCAAGTGTTAC 3878954 28 100.0 32 ............................ ATACAAGCGTCGTAGAACGCTGTGACCACTGT 3879014 28 100.0 32 ............................ AGCAAGCGAAGAAAGCGAAGAAAGCAAGTACC 3879074 28 100.0 32 ............................ CATCGGACTTCTTATCGAACTTGATAGGCAGC 3879134 28 100.0 32 ............................ GGAAGAAATTCTGAAGCTCGCTGATGACGAGC 3879194 28 100.0 32 ............................ AAACAGTGTGCTGAACTTATTAACGATGATAC 3879254 28 100.0 32 ............................ GCGGTGCTGAGGCCAATCCTTAAGGTCGAGTC 3879314 28 100.0 32 ............................ AGAATCCATCCCATCAAACATTGTAGGAGGAT 3879374 28 100.0 32 ............................ GAAGGTGATAGCCCCGAGAGAGCAGAGAGAGA 3879434 28 100.0 32 ............................ GCGATATTGTGGATATGCTCATCGCCGCTGGT 3879494 28 100.0 32 ............................ ACGGTCGTGCAGTGGGTCTTAAGCAAGGGTTA 3879554 28 100.0 32 ............................ TTGAGAGTATTCCCTCATGAACGATGTAAAAA 3879614 28 100.0 32 ............................ ATACGGGATGACGCTCAGACAGTTAAAGCATA 3879674 28 100.0 32 ............................ AGCAAGCGAAGAAAGCAAGTACCGATGAGAGT 3879734 28 100.0 32 ............................ CGTGTCTACGCAGCTCTTGCACTGCTCTAGCT 3879794 28 100.0 32 ............................ TGAATCAATAAAGTAAAGTTTCATTTATTTCA 3879854 28 100.0 32 ............................ TTGATAGGCTGGCTTGATGCCAGCGTTATCTA 3879914 28 100.0 32 ............................ TAGATACCAGCTCAGGCCTAAGGGCCACAATC 3879974 28 100.0 32 ............................ GTGCTGCCCGTGTCGCCGCCGATGCTGCCGAA 3880034 28 100.0 32 ............................ TCTAGACGCAATCCTCTAGACGCGACGCGACG 3880094 28 100.0 30 ............................ GTAAGGTGATAGCTCAGAGAGAGAGAGAGA 3880152 28 100.0 32 ............................ ACACTAGCCCAGACACAGAGTCAGGACAGTAC 3880212 28 100.0 32 ............................ ATTAATGGTTATTTGTGCCTTGTACCGGGTAC 3880272 28 100.0 33 ............................ CGGCGGGTCGAGCATTTCCGCTGAAAAAGCTCT 3880333 28 100.0 32 ............................ GTACCGACACAGATGCTGAATAAAATCGTTGA 3880393 28 100.0 32 ............................ TCATCCGCGTTCAACGCGCAGCGCTTGTCTGT 3880453 28 100.0 32 ............................ TGCAATGATTAACTATACAAACAAAAAAGCCG 3880513 28 100.0 32 ............................ GTTCGTTCGTTCCTCTCTCTATAGTGACAGTC 3880573 28 100.0 32 ............................ CTAAGTACATGACGGCCCTGTGGCCTGAGTAC 3880633 28 100.0 32 ............................ TATCAAGGCACTAACTAAGAGAGTTAAGAGTC 3880693 28 100.0 32 ............................ GCAGAAGATGTTATCATTACACGAGTTAGAGC 3880753 28 100.0 33 ............................ ATGCGCCCCAGCGCTCTAATACCAATTGAATAT 3880814 28 100.0 32 ............................ GCTCAGCAGGCTGGCAGGCGTACAAGCCAGGA 3880874 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 3880935 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 3880995 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 3881055 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 3881115 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 3881175 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 3881235 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 3881295 27 85.7 0 ....................G..-..CG | AG [3881313] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.7 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //