Array 1 819603-819767 **** Predicted by CRISPRDetect 2.4 *** >NC_010794.1 Methylacidiphilum infernorum V4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 819603 32 100.0 33 ................................ TACCAGGTGGGGAACCTGACGGCCACGAGTTTC 819668 32 100.0 36 ................................ ATTGGAGAGTAATAAAGACGGATAAGTTTGGGTTTC 819736 32 96.9 0 ..............................T. | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 99.0 35 AAGCCCAGTGCACTGGGATACATCATCAACAG # Left flank : GGAAAACTCGATGACGCATGGATGCGGATGGTCTAGGATGCGGTGGGGAATACCTTAAATATCCTTATCTTTTTGCTCTTTTTTCACGAAATGTTCTTCCGAGACTTTTGCCTACAAAGATTCCCCATGCTCAAGATGGGACAAGGGATTTATAGTCAGGATAACTTTACAAGGATACTCCTTGAGATCGGATACCAGAAGAACCCGAGGGGAAGGCCTTCCAGGGCAGTGAGCCAAGCTCTCCCTGGCCTGAACAGTGGCCAAAAACCCAATCTTCAGTTGCCGCCTCAGGCTTCACTGAGCCAATCTGCACGACCGCTACCGGATCCGCCAAGGCGGACATGACCACGCTACCGCTTGCGTGGCATAGCCTGGCCAGCTCACCTTGCTACTGCGTATAACGCTTCGGGTCAACCACGCAGCTATGCTACCCCGTATTGACGAACACCCATAAAGGGCCTCCATCGTAAAGACCGGCTAGACCTAGTCCTAGGTAGCCT # Right flank : GTATCCCTTGCAATCCATTGCTTGTCAAGGACATTTTTTTGCGTTATTGGCAACCTCGGAATGAATCGAGTCGGATTGGTAAAATTGGGGGGAGGTTCTGAATCCAGGGATCGAATTCCCAATAGTTCTTAAGTTTATGGAGGAAAGTCCCCGCCAGCTTCCTTGGTCCAACCCTGTGGAATTGGACGCCAGTCCGAAAGGGTCCCCTCGAGGACAGCTTTTTTGTAGCTATCGACCAGCCGTCGTATCCGGGAATGGAGCATGCTACCCCCAATGCCGCGGCAAGCCTTCACAGATCCGGGTCAACGATTGGACGAAAGGCCCTCCCAACTCAGTTTCACCCGGTGTGACCGGGACCCGAGGGGAAGGCTTTCCAGGGCAGTGAGCCAAGCACTCTCAGGCCTGAAAAAAGGCCAAAAACCCAATCTTCAGTCGCCGCCTCAGACTTCACTGAGCCAATCTGCACGATCGCTACCGGATCCACCAATGCGGCCATCACC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGCCCAGTGCACTGGGATACATCATCAACAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 824922-824622 **** Predicted by CRISPRDetect 2.4 *** >NC_010794.1 Methylacidiphilum infernorum V4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 824921 32 96.9 36 ......A......................... CTAAATTGAGGTGTCATTATCCTTGTAGCATCAGTT 824853 32 100.0 35 ................................ TTTCTGCGGGAATTGTAATTTCTTCCTGTTCAGTT 824786 32 96.9 36 ......A......................... TTATCCTGCTTAACGCTTCAGATTTCTCCAGATGTT 824718 32 100.0 33 ................................ TCCCAGGAATTGCCCAGGAGGGCGGGTTGGGTT 824653 32 81.2 0 .........................C.AGGCT | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 95.0 35 GATGATGTATCCCAGTGCACTGGGCTTGAAAC # Left flank : CATGGCCGCCTTGGCGGATCCGGTAGCGATCGTGCAGATTGGCTCAGTGAAGCCTAAGGCGGCGACTGAAGATTGGGTTTTTGGCCACTGTTCAGGCCTGGGAGAGCTTGGCTCACTGCCCTGGAAAGCCTTCCCCTCGGGTCCCGGTCACTCCGGGTGAAACTAAGTTGGGATGGCGTTTTGTCCAATCGTTTAGCTAGATCTGTGAAGGCTTGCCGCGGCATGGGGGTACCATGCTCCATTCCCGGATACGATGGCTGGTCGATAGCTACAAAAAAGCTGTCCTCGAGGGAACACTTTCGGACTGGCGTCCAATTCCACAGCGTTGGACCAAGGAAGCCGGCAGGGACTTTCTTCCATGAACGCAAGAACTATTGGGAATTCGATCCCCGTATTCAGAACCTCGCCGTAATTTTGCAAATCCGACTCGATTCATTCCGAGGTTGCCAATAACGCAAAAAAATGTCCTTGACAAGCAATGGCTTGCAAGGGATACAGTG # Right flank : ACCTAGGACTAGGACTAGCCGGTCTTTAAGATAGAGGTCCCCTCATGGGTGTTCGTCAATACGTGGTATAGCATAGCTGCGTGCTTGACCCGAAGCGTTATACGCAGTTGCAAGGTGAGCTGGTCGGGCTACGCTGCGCAAGCGGCAATGTGGTGATGGCCGCCTTGGCGGATCCGGTAGCGATCGTGCAGATTGGCTCAGTGAAGTCTGAGGCGGCAACTGAAGATTGGGTTTTTGGCCTTTTTTCAGGACTGGGAGAGCTTGGCTCACGGCCCTGGAAAGCCTTCCCCTCGGGTTCCGGTCACTCCGGGTGAAACTGAGTTGGGAGGGCATTTCGTCCAATCGTTTAGCTGGAACTGTGAAGGCTTGCCGCGGCATGGGGGCAGCATGCTCCATTCCCGGATACGACGGCTGGTCGATAGCTACAAAAAAGCTGTCCTCGAGGGAACTCTTTCGGACTGGCGCCCAATTCCACAAGGTTGGACCAAGGAAGTCGGCGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGATGTATCCCAGTGCACTGGGCTTGAAAC # Alternate repeat : GATGATATATCCCAGTGCACTGGGCTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 825895-825657 **** Predicted by CRISPRDetect 2.4 *** >NC_010794.1 Methylacidiphilum infernorum V4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 825894 35 100.0 32 ................................... AAATTGTTCCCCATTTTTCTTTAGCTTTTCTA 825827 35 100.0 33 ................................... TCTTCTACTTCTTTTACTTTTACCAGGCCTTTG 825759 35 97.1 33 ....G.............................. AAAACGAAGCGAAAGCGTCGGCTGGCTCAGGAA 825691 35 80.0 0 ....G.......................C.AGGCT | ========== ====== ====== ====== =================================== ================================= ================== 4 35 94.3 33 GTTGATGATATATCCCAGTGCACTGGGCTTGAAAC # Left flank : GGTGATGGCCGCCTTGGCGGATCCGGTAGCGATCGTACAGATTGGCTCAGTGAAGTCTGAGGTGGTAACTGAAGATTGGGTTTTTGGCCTTTTTTCAGGACTGGGAGAGCTTGGCTCACTGCCCTGGAAAGCCTTCCCCTCGGGTCCAGGTCACTCCGGGTGAAACTAAGTTGATAGGGCGTTTCGTCCAATCGTTTAGCTGGATCTGTGAAGGCTTGCCGCGGCATGGGGGTAGCATGCTCCATTCCCGGATACGACGGCTTGTCGATAGCTACAAAAAGTTGTCCTCGAGCGAACACTTTCGGGGCTGGCGTCCAATTCCACAGGGTTGGACCAAGGAAGCTGACGGGGACTTTCCTCCATGAACGCAAGAACTACTGGGAATTCGATCCCCGTATTCGGAACCTCCCCCCAATTTTACCAATCCGACTCGATTCATTCCGAGGTTGCCAATAACGCAAAAAAATGTCCTTGACAAGCAATGGCTTGCGAGGGATACA # Right flank : ACCTAGGACTAAAACTAGCCGGTCTTTAAGATAGAGGTCCCCTCATGGGTGTTCGTCAATACGGGGTAGCATACGACTTGAGCGACAATAGGGAGCGGGCTATGGTGGAACGCTGCATTTCCCGCTACGGCCAACGCCTGCAGAAAAGCCTTTTTAGCTGCGTTCTTGACCCTAAGCGTTATATGCAGTTGCAAGGTGAGCTGGCCGGGCTACGCTGCGCAAGCGGCAACGTGGTCATGGCCGCCTTGGCGGATCCGGTAGCGATCGTGCAGATTGGCTCAGTGAAGCCTAAGGCGGCGACTGAAGATTGGGTTTTTGGCCACTGTTCAGGCCTGGGAGAGCTTGGCTCACTGCCCTGGAAAGCCTTCCCCTCGGGTCCCGGTCACTCCGGGTGAAACTAAGTTGGGATGGCGTTTTGTCCAATCGTTTAGCTAGATCTGTGAAGGCTTGCCGCGGCATGGGGGTACCATGCTCCATTCCCGGATACGATGGCTGGTCGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATGATATATCCCAGTGCACTGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 827125-826621 **** Predicted by CRISPRDetect 2.4 *** >NC_010794.1 Methylacidiphilum infernorum V4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 827124 35 100.0 31 ................................... GGAGAGCTCCGGTTGGGACTAGGCTATAAAA 827058 35 100.0 33 ................................... CCCATTTGCATTTGCATTCATCGTCATATATTT 826990 35 100.0 31 ................................... GGAGAGCTCCGGTTGGGACTAGGCTATAAAA 826924 35 100.0 33 ................................... CCCATTTGCATTTGCATTCATCGTCATATATTT 826856 35 100.0 31 ................................... TACCACGGAGTCCACTTCCTCAGGGATAAAA 826790 35 100.0 33 ................................... CCGAAAAAGTGGTCTCTTCATCCGGAGCAAGAA 826722 35 97.1 32 .........A......................... CCACGGAGGCGAACCAATGGAGTGTTGCTCGA 826655 35 74.3 0 ......A..A...............A..C.AGGCT | ========== ====== ====== ====== =================================== ================================= ================== 8 35 96.4 32 GTTGATGATGTATCCCAGTGCACTGGGCTTGAAAC # Left flank : ACCTTGGTGTCCTCCACGAGGCTAACGGGCGGCACGAAGCGCTCGTCAGCGACCTGGTGGAAATCTTCCGGCCCGAGGTCGATCGGTTGGTGATCCGTTTGATTCATCTCAAGATGATCCAACCAAAAGATTTTGTCTTCCAAGACGGTCTTCTGTGGTTGAGACCGGAAGCACGCCGGCGTTTCGTCCAATCGTTTACCCGGATCTGTGAAGGCTTGCCGCGGCATGGGGGTAGCATGCTCCATTCCCGGATACGACGGCTGGTCGATAGCTACAAAAAAGCTGTCCTCGAGGGAACACTTTCGGACTGGCGTCCAATTCCACAGGGTTGGACCAAGGAAGTCGGCGGGGACTTTCCTCCATGAACGCAATATCTATTGGAAATTCGATCCCTGGATTCAGAACCTCGCCGCAATTTTGCAAATCCGACTCTATTCATTCCGAGGTTGCCAATAACGCAAAAAAATGTCCTTGACAAGCAATGGGTTGCGAGGGATACA # Right flank : ACCTAGGACTAGCCGGTCTTTAAGATGGAGGTCCCCTCATGGGTGTTCGTCAATACTGGGTAGCATACGACTTGAGCGACAATAGGGAGCGGGCTATGGTGGAACGCTGCATTTCCCGCTACGGCCAACGTCTGCAGAAAAGCCTTTTTAGCTGCGTGCTTGACCCGAAGCGTTATATGCAGTTGCAAGGTGAGCTGGCCGGGCTACGCTGCACAAGCGGTAGCGTGGTGATGGCCGCCTTGGCGGATCCGGTAGCGATCGTACAGATTGGCTCAGTGAAGTCTGAGGTGGTAACTGAAGATTGGGTTTTTGGCCTTTTTTCAGGACTGGGAGAGCTTGGCTCACTGCCCTGGAAAGCCTTCCCCTCGGGTCCAGGTCACTCCGGGTGAAACTAAGTTGATAGGGCGTTTCGTCCAATCGTTTAGCTGGATCTGTGAAGGCTTGCCGCGGCATGGGGGTAGCATGCTCCATTCCCGGATACGACGGCTTGTCGATAGCTA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATGATGTATCCCAGTGCACTGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //