Array 1 516805-515760 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDH01000001.1 Galliscardovia ingluviei strain CCM 8606 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 516804 33 100.0 33 ................................. GATGACAGTGGTGCGTGTTTTCAGGTCGTCAAA 516738 33 100.0 36 ................................. ATTGAACGAGGAAAGCGCATCTTTAACTCCACAATC 516669 33 97.0 34 ...........................C..... TGTGCTTGATGGTAAACCAGTGCCGCATTCTGGC 516602 33 93.9 35 .......T...................C..... CACAGCACATGCAAAACGCCGCCAACAGTATTGAA 516534 33 93.9 34 .......T...................C..... GTTTGACGATTGGGCAAACGTAGTGGACGACTTT 516467 33 93.9 35 .......T...................C..... CAAACATGGCAAGCGAACTCACGCACATAGGGCAG 516399 33 93.9 34 .......T...................C..... ACATTTGGTACTACGAGTGGTGATTTACGACTCT 516332 33 90.9 35 .......TA..................C..... AACACTTAAGCGTGCGCTCACTCGCATTTTTATCG 516264 33 93.9 34 .......T...................C..... AAAAGTGGTTAGGCACTCCGTATGACATACCCGT 516197 33 100.0 35 ................................. ACCACACGTGAGCTCATGCGCGGCGCTTGAAGGTC 516129 33 100.0 34 ................................. TTGACGGTAACGCCTTCATTCGTTTAGTGCGTTT 516062 33 100.0 35 ................................. ACGCTTATAGACATTATTACTAATCGTATGCCATG 515994 33 100.0 34 ................................. TTCGCAAAGTTGTTTGATTATTTGTTCTTGGCTT 515927 33 100.0 34 ................................. GTAACCACGCCACCACATGACGTGTGTTTGTAAC 515860 33 100.0 33 ................................. AACTCAGCATTCACTCGCTTCACCGTTTGTAAG 515794 33 81.8 0 .......................TC....TGGA | A,G [515762,515768] ========== ====== ====== ====== ================================= ==================================== ================== 16 33 96.2 34 GTCGCACCCCTCACGGGGTGCGTGAATTGAAAT # Left flank : CTGGAGTTGATTCACGAACTGTTGGAAATAATAGATAGCGAAAAAGACAGTATCAGGTTCTATAATTTAGGCAGCAAATATTCAACAAAAGTAAGCCACTACGGTAGGCAGACTCATCACCCCTTAGATGAGGTGTTGATTATTTAGACGTAGGTGCATAGCGGGGCATAATGCATAGTTATATGTGGGTACGAAATTATGCATGCAATGCGAATTGGAAATGCTGCGAATGCCCCTAAGTGTTACCATAAACTTCTTGCTAAGAACCTATGCGAACCGCAAGTACTCATCAATACACGGAGTGTTCGCACCAGATAAAAGCATATTTTGGTATTCGCCGACGTTGTTTGTTCATTATTGCAATCGTTGTTTGATAATTTCAGAGTGAGATATAAGGACAACATAAACAAGGAAGTAGTATTTATGCTTCCTCGTGGAAATTATTCGTCACATATGGCATAATATGTGCTCGTATAGTGGATAATTTGTCCATCTATGCG # Right flank : TGACGTATGGGTTGTACTGCTGCTTCTCGTAATGCTGCCTGAGCTTGTTCGAGTCGTGCCGCAAGCTTTGCAGCACGCACAGTCATCTCTTCTTCACTTCCCTCACCAATAAGCGCCTTGTCTTCATCAGTAAGGATAGGGTGGGCTTGCTTAATAGACACCCAAACTTGTTCCTTCTTATAATTCGCGATAGCCTGATGCGCCTCTTCAAGATCACGTTGCAACCGCTCTGTCTCACTGAGTTTCTCATCCTCATAGGTTTTCAACTGCAATTTATAACTATCGTTCATTTCTTTGATTTTGGCGTTATCAGCACGCAAGTTCTGAATAAGATTCCACGCTTTAGCAGGGTCGAAGTCCACGCCGTCACGCTCCCACGGTGGCGTGGATGCTTCTTGGTCTGTTTGACTCTCACTATGTTCGCCTGTGGTTGGTTCTGTCTGCTCTTCTTCTGGTTCTTGATTATCCAATCGTATTCCTTTCTACTCCTGGTAGTAAAA # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGAATTGAAAT # Alternate repeat : GTCGCACTCCTCACGGGGTGCGTGAATCGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 839790-840431 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDH01000001.1 Galliscardovia ingluviei strain CCM 8606 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 839790 33 100.0 34 ................................. GATTGCATGATTCAGGTGCTTACGGATCTTATCA 839857 33 100.0 36 ................................. ACTTGTCAGAGCGTTAAAAACTGCATGGGCGTTAAG 839926 33 100.0 36 ................................. CAAAACACCGTGTCCACGAATACCAAACAGGCGTAG 839995 33 100.0 34 ................................. ACGTCTTGTGCGGTGAGAAAGTTCATAATGTGCT 840062 33 100.0 33 ................................. CATCCGTCTATTGTTGCACAGTTTTTTGTTTGT 840128 33 100.0 36 ................................. GTGGAACGTGTCGATAAACTCGTCAATATCATCAAC 840197 33 100.0 33 ................................. CATTCTCACAGTACATCTGGCAACTAAACACGT 840263 33 100.0 35 ................................. ATTTGGTGTGAGTTTTGTTGAGCAGCGTCTTGCTG 840331 33 100.0 35 ................................. AAAGCAGTAACCCCGTTGGTTATGCTTTTGCTTCC 840399 33 93.9 0 ............................AG... | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 99.4 35 GTCGCACCCCTCACGGGGTGCGTGAATTGAAAT # Left flank : TCGTCAGTGAGTTCATAGTCTACTATGTAGGAATCTTCGAACCCTGGCGTTGAGAATACTTGCTTCATTGCACAATACCATGCAGAGTTTGTCTACCAATACAATGCTTTATCATCATTGAACATTATCATCATCACTTTATGTGTTGTAACCGCCATCGCGCCTTAGCACGGTACGTAGAACTTCAGTAGTAGCACTAGTCTTTCCTCTTCGAAAAGCTTGCAACCCTTGCTACAATACCCATTGTATATAAGAAGCTTGTTATCCAATGTACGGCTACGCGAACCTTAAGCACACACTTCTCTACGGCATGTTCGCACCACAGTTTCCAACTTATCTGCGGTACGATAAGAGTAGTTATCCAAAACACTGTTGAAAATCTGATAATTACAAAGAGATATTAAACAGCCTCATAGCGTGTGAAGTAAAAAACCATCTTTGCATGTACCTTATATGCCATAATAATGATTGGATAGTGGGCATAATTGTCCATTATCGCG # Right flank : TCTCAGCTTTGATTTTTCGGTCTTGATATTCGTTTTTTTTAATTTATATAATGCTGTATAAATACCCAATATGCCACTCTTATGTCCCGTATTCTCAATAAAGCAATGACATATGGAACAACAAAACTACTTTATTGAAAAGCGGTTTGCAGTTCATGTGCGAACGACAAAAACCTACCTTCAGCAATCTGCTCCAATGGTCGTGTACTCGCTACAGAAACAATAAATTCTGGTTGATATGCACCCGCTATTGGCAATGCCACAAGTCCCTCTGCTTGTTTCAGAGCAATATCAGCCAAGAATCCGATTCCTAATCCTTCCCGAATCATCGATAACACAATCTGCACATCAGACTGATATATCTCAACATGTGCTCCAAGCTGCACATGCTGCATCAACAATCGAAAAGCAGACTCATGCACATAATGCTCATCTAACAGTATAAAACTACGATCCGCACACTCTTGTATACTCACCTCAGAGTGAGTAGCAAGGGGATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //