Array 1 134037-135029 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJO01000004.1 Escherichia sp. E10V10 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134037 28 100.0 32 ............................ GATGAATGCCGCAAAAGGTGCAAAAACGGTAC 134097 28 100.0 32 ............................ AGAATACCTGGCGGAAAACAACACCGAATTTG 134157 28 100.0 32 ............................ TGAGTCGACCAGGCTGTCGAACCGGACTGAGT 134217 28 100.0 33 ............................ GATGACATTTACGGAGCGAAAAGGGGGTATAGC 134278 28 100.0 33 ............................ CCAAACGATACACGAAACCGCATCGAGCCCAGC 134339 28 100.0 32 ............................ GGTGTGTGTGTTATTGCCGGTTTAAAATAATC 134399 28 100.0 32 ............................ ATTATGGGACGGCACATCTAGCAGCAGAGAAG 134459 28 100.0 33 ............................ CAGGGGTGCACGATGCGCCCTCTGCGCTTATAT 134520 28 100.0 32 ............................ AAATAGAATATTTAATATTACTACCATTGTGC 134580 28 96.4 33 ...........C................ GCCCGCATGATGGCGCGCCTGGCTAATCTTAAT 134641 28 100.0 32 ............................ GCTGCCGGTCAAATTAGTTTTAGTCCGCCCAA 134701 28 96.4 32 ...............A............ TCCCGCCAGTACCTAATCAAACAAACCTGTTA 134761 28 100.0 32 ............................ AGTAGAAGACACGCAGATCGGCTGGAAAAATG 134821 28 100.0 32 ............................ CACCCCGGAGCAGGCGTTATGTCAGAAGATAA 134881 28 100.0 32 ............................ GTGTGCATAATGGCAACTGAATCCAGCAAATC 134941 28 96.4 32 ...........C................ TGTTGAGCAATGTAATCGGGGTCAGATGCATC 135001 28 89.3 0 ...........C........T...C... | C [135024] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAGGAAGTTCAGACCCTTTTTTTGATGATGATGGTAATTTGTTGATAATTAATGCTGCTGAAAGGTAAGAATAAAAAAGGATTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGCAACACGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATACCGGGGTGATGGTGGGCTTTTGTGGTACGAATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 149478-149745 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJO01000004.1 Escherichia sp. E10V10 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 149478 28 100.0 32 ............................ GCAACAATCTGAACCTGACGCGACAATTAAAC 149538 28 100.0 32 ............................ TTCGGCAGATGGTCCGAGGCCATGATGATACG 149598 28 100.0 32 ............................ TGGCATTGAGTCGGTAATTTTGCCGTTGGTGT 149658 28 96.4 31 ............G............... GCAAGCTGTCTCGCCCCTTCGGGCTTCCGGC G [149684] 149718 28 82.1 0 ..A.T...............T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCCCCGCCAGGCTGTGCAATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCATAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTTAACACACCATCCTCCAGTATTTATTCCCCTTGACCCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //