Array 1 11177-8470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCW010000025.1 Flavobacterium psychrophilum strain 1730 s contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 11176 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT CT,T [11163,11169] 11097 46 100.0 30 .............................................. AAAACAGAAGTGCAAATTAGCAAGGAAGTA 11021 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 10945 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 10869 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 10793 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 10717 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 10641 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 10565 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 10489 46 100.0 30 .............................................. TTACGAGCCAATTAACAGTAAAAAATACTA 10413 46 100.0 29 .............................................. CCTCATTCCTGCTTCATCTGGATCCATAC 10338 46 100.0 30 .............................................. AATATGCAACTTACGGATTGTTTCTTCGTC 10262 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 10186 46 100.0 29 .............................................. AATTTTCTAGTTCCGTTAATGCCTCTTTC 10111 46 100.0 30 .............................................. ATAGTTTAAAAAAAATATTTGCAAAACCAA 10035 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 9959 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 9883 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 9807 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 9732 46 100.0 30 .............................................. TGACAACGGGATAGAAGCAAATGTTTCTAA 9656 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 9580 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 9504 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 9428 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 9352 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 9276 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 9200 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 9123 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 9047 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 8971 46 100.0 30 .............................................. GAGTTCTCAGTCATCTGTCTTTTGTCGCCA 8895 46 100.0 30 .............................................. GGCATAAAATGATTTATGAAGTCTATTTGA 8819 46 100.0 30 .............................................. ACGCCTGTCACTATGTCGTCGTATATTTCT 8743 46 100.0 30 .............................................. ATTTCATCTATTTGCCTTAACTCACTATCA 8667 46 100.0 30 .............................................. TTACAAAAGCAGAAGAATCTGATTCTTTAT 8591 46 100.0 30 .............................................. GGTTTGCTTGAGCAGTTCTTCTCTGTGAAC 8515 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 36 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 136-452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCW010000071.1 Flavobacterium psychrophilum strain 1730 s contig00071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 136 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 205 41 100.0 28 ......................................... TTGAAAAAAGCCTCATCTCCAATAGAGG 274 41 95.1 28 ......................A.................G CCTCCAAAAACATAATCTCCAATAGAGG 343 41 87.8 28 .............G..G.....G.........T...G.... TCGGAAAAAGTATAATTTCCAATAGTAG 412 41 80.5 0 .......G.....G..G...............TT.TTG... | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 92.7 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : TAGGAACATTTAAAGCACAGTTTGATTGAGTAACATTACCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTCCTTAAACTGCTACAGCCTGCAAAAGCATTCTCTCCAATAGCAGT # Right flank : TCTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCTGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 323-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCW010000091.1 Flavobacterium psychrophilum strain 1730 s contig00091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 322 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 253 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 184 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 115 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //