Array 1 35466-43128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQI010000192.1 Xanthomonas melonis strain CaNP6A contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 35466 28 100.0 32 ............................ TGGTCATCCGGGCGCAGCGTCGGGAATCCTCC 35526 28 100.0 32 ............................ TTGGCGATTGCGCCGGTGATCGGGTCGTACTC 35586 28 100.0 32 ............................ TTGTTGGTCCAGGCAGAGACGCCGATCGGCGA 35646 28 100.0 32 ............................ TCAGTGAAGCGGCAACAGCGGAAAATCAGCTC 35706 28 100.0 32 ............................ TGGAAGGCCAGAAGCTGCGGCTGATCGACTTG 35766 28 100.0 32 ............................ GCCACCTGGGCGTCCTGCAGCGTGCCGCCGTC 35826 28 100.0 32 ............................ TTCGGCATCCTGCAGGTCCAGTCGTACACCGA 35886 28 100.0 32 ............................ ACCAACGCCATGGCGCAGTCCCACGCAATCGG 35946 28 100.0 32 ............................ TTGGCCAACGGGCTGGCGGGATCTGGATACGG 36006 28 100.0 32 ............................ TGGACGAAGACCCGGATTTACGAGAACGCGAA 36066 28 100.0 32 ............................ TTCTGGCCGTAGGTCCGGCCCTTCCTCTTCTC 36126 28 100.0 32 ............................ ACCCGGAAGAAGCGCAGCCGGTCCAAGATCAT 36186 28 100.0 32 ............................ AGCAGGCGCAGCGCAGCCCGCGCATCAGCGCA 36246 28 100.0 32 ............................ TGGACGAAGACCCGGATTTACGAGAACGCGAA 36306 28 100.0 32 ............................ TGGTCGATGACGGGTTCCAGCTGCGGCACGAC 36366 28 100.0 32 ............................ TACCAGGGCAATCGCAAGGATGAAACCGATAA 36426 28 100.0 32 ............................ AGCAACGCGTGTGCTGCGCCTAACGAATTTGT 36486 28 100.0 33 ............................ CAAGGGTGCAACGGTGGTCGTCATTAATGACGC 36547 28 100.0 32 ............................ GTTCGCGGTCTCGCTGTCGCTATCAGTGCCAT 36607 28 100.0 32 ............................ AGACTCATCGCGGACGACATCACATGATCCGG 36667 28 100.0 32 ............................ TGCCGAAGAAATGATGGCGCTGCGTGCCGACA 36727 28 100.0 32 ............................ ACGTGGCCCAGCGGCCTATTGAATTGGAGTTC 36787 28 100.0 32 ............................ AATACGAACCTGTCGCGATGAACTTCGGCGTG 36847 28 100.0 32 ............................ GTGTGGTCGTCCATCGGCGTCATGCCGGCATA 36907 28 100.0 32 ............................ GATCCACCAGGTGGCCGCCCAGTAGCTCAACG 36967 28 100.0 32 ............................ AGTGGCCTGCCCTTGCCGTCAACCATCGGAAA 37027 28 100.0 33 ............................ CTGCTTGATGAAGGTCGGGAAGTAATCGAGTCG 37088 28 100.0 32 ............................ TCAGCCACAACGAAAGCGGCCGTCCGGAATAT 37148 28 100.0 32 ............................ AAGCACTTCCGGCGTATCGCTGGTGAGATTCT 37208 28 100.0 32 ............................ ATGAATCCGAGTTGCGTCGCGCCAGTCGTGTG 37268 28 100.0 32 ............................ AAAGACATCGGCCAGGGAAGCAATTCCCCGGC 37328 28 100.0 32 ............................ TCCCCGCGCTTTTCCTTCACTTTGTGCATGTA 37388 28 100.0 32 ............................ AATCAGTAGCGTGCCCACAGCTCCCATCGCTC 37448 28 100.0 32 ............................ ATCAACGAGTGGGCCGCATCGCTCGCTGCGAT 37508 28 100.0 32 ............................ AGGGGAAGAGGGAGCGCTGTCGGCGCATGCAG 37568 28 100.0 32 ............................ TACGGAAAAATGGCGCGTTGGCTGCGAACGCA 37628 28 100.0 32 ............................ GGCCCTTGCCCTGCCATCATGATGAACTCGCC 37688 28 100.0 32 ............................ TCATAAAATCTTCAGCCGCCAGAGCGTGATTA 37748 28 100.0 32 ............................ TTGTTGCTCTCAAGATAAGTCGTTCCATGTCT 37808 28 100.0 33 ............................ ATATCGTCGCAGCTGAATCGCAGCCGGCATGCT 37869 28 100.0 32 ............................ GCTGGAAGCATGGCGGCGTCTGGTACACAGGC 37929 28 100.0 32 ............................ GGCGTAGACCACCCTGCCCTCATCCTTGAACT 37989 28 100.0 32 ............................ TTCGCCAGTCCGATCAAAGCCCGGTGGTGCCC 38049 28 100.0 32 ............................ AGCGCGTGTTGCCAGTGGCGTCGTGTAGAAAT 38109 28 100.0 32 ............................ TCATGCACAAGGACATCGATCATAAGGGCCGC 38169 28 100.0 32 ............................ ATGCCGCATCGTCGTTGCGGTCCAAATCCGCC 38229 28 100.0 33 ............................ ACCTTCCAGCGCCTGCACGCGCGCGATCAGTGC 38290 28 100.0 32 ............................ CCGTCGCAGGATGCGAGCGGCCGGGTGTCCGT 38350 28 100.0 32 ............................ TTCTGGGGCGCCAGCAGGCAACGCCACAACCG 38410 28 100.0 32 ............................ CTCACCGATGCGCCGCTGAACCGTTCGACCGC 38470 28 100.0 32 ............................ TGCCTGGTATGTCAGCAGACCCTGGACAGTCA 38530 28 100.0 33 ............................ CTGGAAGTGCGCCAAGCCGCCGATGATTGCCAG 38591 28 100.0 32 ............................ CTGGCCCGCGTAGGCGGTGCCGCAAGCATGAA 38651 28 100.0 32 ............................ AGCCGTCATACGTACAGGGAAGCGATGAGCTG 38711 28 100.0 32 ............................ AATGCGTGTCAGCGCGCTTTCCACTCGGGTGA 38771 28 100.0 32 ............................ TGCACAAGGACATCGATCATAAGGGCCGCGTT 38831 28 100.0 32 ............................ AATGGCAGCACGCCATGCCGCATCGTCGTTGC 38891 28 100.0 33 ............................ ACTGGAGGACAGGCCCCAAACGCCATGTTCGGT 38952 28 100.0 32 ............................ TTCCAGTCCGGAACGTCGTCTTCGTCTTCATC 39012 28 100.0 32 ............................ ATCCTCGGAAACCTCGATCCAGCCCACCGACT 39072 28 100.0 33 ............................ CTACAACCCGTTTGATGCGGGTCGCGTGGAAGT 39133 28 100.0 32 ............................ AAGCGCAACGGCGGCAACCTGCCGAACGTTTC 39193 28 100.0 32 ............................ CCCCGCAGAGTCCCCGGCTGCGGGAATGCTCA 39253 28 100.0 32 ............................ TTGTCTGGTGCGAACATGAGGACTATCCGTTC 39313 28 100.0 32 ............................ TGGGGGAACCATGGGTTGTGCCGCCAGTTGAT 39373 28 100.0 32 ............................ TGGCGAGGTGCGCGTGCTCTACATGCCGGAGC 39433 28 100.0 32 ............................ TTGAACGGACTGTGCGCGCGGAGGTGGCCGGG 39493 28 100.0 32 ............................ ATGAGCGGCGTGTGCGAGGTCCACAGGCTGGC 39553 28 100.0 32 ............................ ATCCGGAACCTGCTGTTCCACCTGCTGGCGGG 39613 28 100.0 33 ............................ TTCAGGCGCCACGCCGCAGCAACCGAATGTCGT 39674 28 100.0 32 ............................ TGGATGAGTGGGGCCAGCCAGAGTGCGACATT 39734 28 100.0 32 ............................ TTGGCGATCTCCTGCAGCACCGCTGGTGGCAC 39794 28 100.0 31 ............................ ACGACCAGGTTGATTGCGTCGTCGCGGTCGA 39853 28 100.0 32 ............................ TCCAGTGGCGACCTGTACGCGGTCGATTGGTG 39913 28 100.0 32 ............................ CGTGGCAGCAGCTCCCGCTCTCTCGCAGACAG 39973 28 100.0 32 ............................ TTGAAGAAATTGAGCGCGAGGCCGAGGCGGTG 40033 28 100.0 32 ............................ AAGAAATCGAAGCTTTCTTCATGAGTTTTATC 40093 28 100.0 32 ............................ TTTATCACCGCGCCGATGTCAGCCTGCAGCGA 40153 28 100.0 32 ............................ GTCTGCTCGGCGTCGGCGAAGTCCTCATCCGT 40213 28 100.0 32 ............................ GCGTCGACGAGATCGACTTGGCCGCCATGGGA 40273 28 100.0 32 ............................ TGGAAGCGCAGCGCGAGAAGATCCGTCAGGAG 40333 28 100.0 32 ............................ AAAGTGCGCCACGAACGCATCGACTATCTGCT 40393 28 100.0 32 ............................ TGCGGCACACCTGGGCAAGCTGGCACGTGATG 40453 28 100.0 32 ............................ TGTTGGACGAGAACTGGTCGACGCTGAAGGAC 40513 28 100.0 33 ............................ TGCGCAAAGCCGTTGCGGTCTTCAGTTTCGAAA 40574 28 100.0 32 ............................ GCCGAATTGCTGGTTCCGCTGCAGCGCAGTGG 40634 28 100.0 32 ............................ TTCCGGAATTTCAGGTCGGCAGGCGCGGCTGG 40694 28 100.0 32 ............................ ACGCGTGGCCGCGCCCACGTACGGAGCGGCCC 40754 28 100.0 32 ............................ ACGCCGCAGCAGTTCGGCAATGCGCTGAACTA 40814 28 100.0 32 ............................ TTGCCGAGCGGTCCCAGGTCGATCTCCAGCGG 40874 28 100.0 33 ............................ AGCCGGCGGCGCCCATGCCGGCACCTCTTCCAC 40935 28 100.0 32 ............................ TCGCGTGGTCGCCGCTCGGCTGGCGCTGCAAG 40995 28 100.0 32 ............................ TGGCCGACACCGCCGACGCTCGCGAACGAAGC 41055 28 100.0 32 ............................ GAAGTACGCCATGGGCGAAGAGGGTGCATTGC 41115 28 100.0 32 ............................ TGGTGGAGGAAGGCGACTTCTACCGCCGCGAC 41175 28 100.0 32 ............................ GCGACCGGTGCCATCCTCGCTTGCATCGAAGC 41235 28 100.0 32 ............................ TTGTTGAAGTGGCCACCCTTAGACTCGGCCGC 41295 28 100.0 32 ............................ GTCACCAAGGGCAAATACATCCAGGCCGTTCT 41355 28 100.0 32 ............................ TTGTAGCGATTACTTACCGTGTAAGTGTACGC 41415 28 100.0 32 ............................ GAAAGTCGCCCGCGCCCTGTCCGATCCGGGTA 41475 28 100.0 32 ............................ ATCCCGGCAACCGCAGCATGTGCTGCACGCTC 41535 28 100.0 34 ............................ CTCGCGGCCGTCGATCAGCGTCAACATGCGTTCA 41597 28 100.0 32 ............................ TTGTAGCGATTACTTACCGTGTAAGTGTACGC 41657 28 100.0 32 ............................ GAAAGTCGCCCGCGCCCTGTCCGATCCGGGTA 41717 28 100.0 32 ............................ ATCCCGGCAACCGCAGCATGTGCTGCACGCTC 41777 28 100.0 34 ............................ CTCGCGGCCGTCGATCAGCGTCAACATGCGTTCA 41839 28 100.0 32 ............................ AGGCAGAGGCGAAGGGTGCTGGCTGGAAGGCA 41899 28 100.0 32 ............................ TTGCGGGTACGGAAATCAGTCATGAGATACTC 41959 28 100.0 32 ............................ CGCGAATCACTGAAATTGTAGGGTCCATTGCC 42019 28 100.0 32 ............................ ATCGTGACCGTAACGAACCAGGGCGCAGGCTA 42079 28 96.4 32 T........................... AACGGGGCGGCCGGATGACTACGTGGATCTGG 42139 28 100.0 32 ............................ CAGCGAGTCGGTGCCGGGGCACGCGGAATAGC 42199 28 100.0 32 ............................ AAGCGGCGCGCAGAGCGCCGTGCAGCACATCT 42259 28 100.0 32 ............................ ATCGCTAACGACCGCTTCCGGCATCAAGTCCA 42319 28 100.0 32 ............................ GCGTGGCCGGCAAGCGCGCCAATGAGCGCGAA 42379 28 100.0 32 ............................ ACGCGCCAGGCTGAAGTGCTGGCCGATTATAG 42439 28 100.0 32 ............................ ATTCTGGGCGGCGTCATTGCGCTGCTGACCGG 42499 28 100.0 32 ............................ TGCGCGCAGTGATCGCGTCGATCGCTTATCGC 42559 28 100.0 32 ............................ TGGATGTTATGCCATGCGTGCAGCCCCCCTTT 42619 28 100.0 32 ............................ CCCACCGGCTGGCATGGCGGGGCGGTGTAGAG 42679 28 100.0 33 ............................ AGCTGGGCTTCACCACGCTCATCTGCATCCTGT 42740 28 100.0 33 ............................ CGGCAGCGGTGCGTCATCCGGCCATTCCTCGAC 42801 28 100.0 32 ............................ TCTTGCCATCGCGAATGTCCAGCCCCGAGGCG 42861 28 100.0 32 ............................ GATGGCGCGGCGGTGCGGGGCGAGCAGGTCCA 42921 28 100.0 32 ............................ TCTACAGGCTGCGCGATCAGCGTCGGTGCCTG 42981 28 100.0 32 ............................ AATCATCGGGCGCAGGCTCCACCCCGGCCAGG 43041 28 100.0 32 ............................ TTGCACTGTTCCGACCAGCCCAGGCGGTAGGT 43101 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================== ================== 128 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CATTGCAGACATTGATGGCCCCGCCCTGGCTGCAAGGCATGCAGGATCATTTGACTGTATCGGACATCTACCCCACCCCCGCTGGCGTGCAGCATCGGCGAGTGATGCGGGTACAGGCCAAGAGCAGCCCATCACGCCTACGCCGCAGGGCGATGCGACGCCACGGACTGGATGCAGAAGCGGCGCTGCAACGCATCCCGGATTCGGCCTCCGAACGATTGCAGCTGCCCTTCGTGGTTCTGGGTAGCCGCAGCACAGGGCAACCCTCGTTCCCGCTCTTCATTCGCCAGGGTCCATTGTCGTCCACTCCAGTGCCGGGCACCTTCAACAGCTACGGCCTGAGCCAGGACGCAACCGTTCCCTGGTTCTGACCCTTTTTTCCTGCGCAGAACACAGCTCTTAAGAATCAACAACTTGGCGGGCCTCCCAAGATAAGGGGGCCCGTTTCTTTTTTGGGGATCTTCCCAGTACCATCAACAGCTTGCGTCATTTTTTGTCTT # Right flank : CTGCGGGTTGTCGACTTTGCTGTCGCCGCCGATTCAAGTCTGCCCCATTCCGGTTGGATCGCCGAAGTAAATCTGACCCTCCCGGGTTCAATCGCCTGGGCATACCTGCGGTGTCGCATGGCACTGTCGATGCAGTGCATACCGGCTGCGCAACTGCGGCGTGCGATGCGGCACTACAGGCAGACGATGGGTCGTGCTGCGGCGCTGCCGAATACCCATCACTCGCGTCCGTAAACCCCCAGGAACATCGCCACCGCCGATTCGGCCACCTGTGCCTGTTGCTCGGCCGACAAGGGGGGCTGGCCGAAGGCCAGCTGCGGCCAGAATGCGAATCCCTTGATCAGCGATTGCAGCTGTTGCGAGGCGAATTCCGCGTCCATCGGCGCCAGGCGGCCGTCGGCCATTGCCGCGCGCAGCCAGGTGGTGGTGCCTTCTTCCTTGCTGCCCAGTTGCGACAGCAGTGCGCGCGCGCGTTCGGGCGAGTGGATGCCTTCGGCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //