Array 1 210775-209067 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFZ01000004.1 Hafnia psychrotolerans strain CGMCC 1.12806 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 210774 28 100.0 32 ............................ ATTATTAAATTGCGTCTTGCTGATGTGAAGGA 210714 28 100.0 32 ............................ TTGTTGGTATTCCCGCTGCCTGTCTGGACACC 210654 28 100.0 32 ............................ CTCATCACTGGCCGCACACCGCAGTCAATAGC 210594 28 100.0 32 ............................ TGACGGTGATTGCAGCGATGGCAAGGGACTGG 210534 28 100.0 32 ............................ CTCATCGTATGAGTCAAATAGTCACCATCGGG 210474 28 100.0 32 ............................ GAGAATAAGCGATAGAACCATCGCGGCTTCAG 210414 28 100.0 32 ............................ GTATAGAGACGAATAATGACTACTCTGTCAGG 210354 28 100.0 32 ............................ GCCAACTCTTAGATAAACACTCAGCCAATGCT 210294 28 100.0 32 ............................ TTCACCTGCAGCATCAAATACCGCAACAAGCA 210234 28 100.0 32 ............................ ATTTGCCGGGAGTTGCTGTTTTTGCAATCGAC 210174 28 100.0 32 ............................ CATCCACAAAATCGAACGGGGAGAAAACAAAA 210114 28 100.0 32 ............................ TTTCAAGGAACACACTATGAATGCTAATGAGC 210054 28 100.0 32 ............................ GGCAACTATTCAGCGGCATCGAACACCGGCTA 209994 28 100.0 32 ............................ AGTGAATGCTCCGTCGAAGAACTCACGCAACT 209934 28 100.0 32 ............................ TAAAGAAACCAGAGACTATGTGCCAAAAGTTC 209874 28 100.0 32 ............................ CCAAAACCCCATTCGATAAACTTTCCGGTCCA 209814 28 100.0 32 ............................ TTAATCAGCATCAACTTCCCTGTGCGAGATGA 209754 28 100.0 32 ............................ TGAGCATTGAAGAACTGAAAAGCATGCGAATG 209694 28 100.0 32 ............................ ATAACTGACTCGTAAAGAGCAATAGCAGCTTC 209634 28 100.0 32 ............................ AAACGCAACAGCATTCAGCGCAGCGGCAATCT 209574 28 100.0 32 ............................ CATAGCACCGAAATCTTTTACGCTAATCCTGT 209514 28 100.0 32 ............................ TCAACTTGAGCCGAGCAAAGATTCCAGTCTCG 209454 28 100.0 32 ............................ ACGTCGCGCACCGACCCAGTGCGCGCGGCCCC 209394 28 100.0 32 ............................ TATGAGCGTTAAGTTATCCGCATACGTCTGGG 209334 28 100.0 32 ............................ TTGAGGCAGAAATCGCAGCGCTGAAAGTCAAG 209274 28 100.0 32 ............................ ACCGGCACCTGATCGCCTTTCAGCTCACGGAT 209214 28 100.0 32 ............................ ATAACGAAGAACCAGCCGAAATCTGGTCAACC 209154 28 100.0 32 ............................ ATCAGACCCTAGCCGCCAGGCCGGAAACCCGC 209094 28 85.7 0 ....................T.CT.C.. | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGCGCTGGCGGCGTTTAACCAGCATCCGTGGCGGAAAGGAGTCAATGACCATATTGAATCCAGCGAAATTAACGCTGTACCGGGCAGTCTGAAGTATCGCACTGTCAGCCGGGTTCAGGTGAAAAGCAGCGCCGACAGGCTGCGTCGCCGGTCAGTCAAAAAAGGCTGGCTGACGGAAGAGCAAGCGCTGGAACGTATCCCGGATAATCAGTCAAAACGTTGCAACTTGCCGTTTATTGCCCTTAAAAGCCTGTCGACTGGTGAGCGTTTTCAATTGTTTATCCGGCAAGGAGAATTGCGTGATTCGCCAGTGGAAGGGGTATTCAGCGCGTATGGGTTGAGTGCGACCACCACGGTCCCCTGGTTTTGACCCTTTATTTTTGTTTATCACTAAGTCATTGATAGTAAACACGGGGTCGTAAAAGGATAAAAAAAGGGGTTAACGCTATAGATGGGAAAAAGCGGTTGTTTATTAAAAGGATAATCGCTTTTTTCAACT # Right flank : CACGTTGCAAACCAAAAGATTTATCTGGAATCCTCACAGCAATTTCAAATATACCCGCTTTATTTAGCTTAGCGATTTACGCTATAGTCACCTCGCTGCGACATAATTCGCAGTCGGGCGTGAGAACTCGGTAACCTAAAGGCGATGCTGCACATCTATAAATGATGTGCGTAAAGTATCGAAGCTTTTGCTCACCTATGATAAGCCGTAATATGGCAAATTATATGTCTATGGTGGCTCAGGCAGGGCTGACTTCGGTCAGGCTGGTATCCTTTAGCGCCAGTATTCTCACCCCTGTCTGGGCTACCACCCAAGAGCGTGAGAACTCCGGTGGTAGCTATTAACTAGCTAAAGGAATTCACGATGAAAACGTCCCACAATCCTACCTTTCTGCCATTTCTCACTTCTTGTTCGCTGCTTTTAATCATCAATACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 222018-220009 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFZ01000004.1 Hafnia psychrotolerans strain CGMCC 1.12806 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 222017 28 100.0 33 ............................ CGCCGAGGGAAAAACGGAGGCGCAGATCGGCGC 221956 28 92.9 32 AC.......................... AGAATAGTTAGCACTAGAATAATGCGGAGTGT 221896 28 100.0 32 ............................ GGCCTGCATTGTTGGGGTAGCGGCGACGACGC 221836 28 100.0 32 ............................ TGGCAATGGGCGGCACTCGGTTTCGCGCATCA 221776 28 100.0 32 ............................ ATATAACCATTGGACCTATAGGCTCTGAGAAT 221716 28 100.0 32 ............................ TGGTGAAGTTCTTCGTTGCATCTCCGCGCAGC 221656 28 100.0 32 ............................ GCAGGAAGATTTCTGCTTAAATGTCCTCTCCT 221596 28 100.0 32 ............................ CTTGTGACAATGCAGGGCGAGGCTCAAGTGCT 221536 28 100.0 32 ............................ AAGAAATTCACAGCTAACAGTTTGCAGAAGGT 221476 28 100.0 32 ............................ ACGCATTGCCGGACACCCGCGCATCGCCGGAC 221416 28 100.0 32 ............................ ATCGAATCATCCAGTGCTGCGGATCATGAAGA 221356 28 100.0 32 ............................ TGCGCGACAAAGCACATCGTGATGAGAATACC 221296 28 100.0 32 ............................ AATCTGCGCGCTGGGAGGAAGGGATGAGCCAA 221236 28 100.0 32 ............................ ATACAGCGGAACAGTGGCGTTCATTCACTAAG 221176 28 100.0 32 ............................ TCATCGAAAGCTCAGCCGCTGTATGCTGGCTT 221116 28 100.0 32 ............................ GTGCTGCTTGACTGCATGGCTCTACGGATCAG 221056 28 100.0 32 ............................ AATACCGTACGTGCGCGCCTGCGTCATAACGT 220996 28 100.0 32 ............................ GACAAAGAAATCGCCCTCAACACTGGCCGCAC 220936 28 100.0 32 ............................ GGTCAGCGGCATCGAACACCGGCGACTGTTCA 220876 28 100.0 32 ............................ TTATCGCCGACCTTCACTTCCTTTGGCTCACC 220816 28 100.0 32 ............................ ACCATGTCCTCGCGATTCCAGACGAGTGTAAT 220756 28 100.0 32 ............................ GGGAGACCCAGCCCGCAGCTTGAGGGGATGCG 220696 28 100.0 32 ............................ AGCTAGGATAATCAATGTCTGCCATTATTCTG 220636 28 100.0 32 ............................ GGTAGCTAGCGGCGGGACTGGGCAGGCTGATA 220576 28 100.0 32 ............................ AAGCTGCATAGATGATTCGAGGCTAACAGATG 220516 28 100.0 32 ............................ AAAGCAGAATCAATCTGTCTTTTGGCGGCATT 220456 28 100.0 32 ............................ ATACAGAGCAGGATGATACGCGCCGCATGAAC 220396 28 100.0 32 ............................ ATAGGCCGCCACCATCGCGATATGATGTAAGA 220336 28 100.0 32 ............................ TAGCTAATTCCTTAACCACACAACCATTTTCC 220276 28 100.0 32 ............................ ATGAAGGCGATGCCGTTAAGATAGTATCGCAC 220216 28 96.4 32 ...........A................ TGCTGGCGTTACAACGCTTTATTTGTCTGGCT 220156 28 100.0 32 ............................ GCGACGTGGACCACCACACCCCGCAAATCTTT 220096 28 100.0 32 ............................ ATCAGACCCTAGCCGCCAGGCCGGAAACCCGC 220036 28 85.7 0 ....................T.CT.C.. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGCAACTGGGTCGGGCTGGCACCGTTGGCCGTCGACGAATCCCTGCGCCGTCAGGGGCTGGGCGAGAAGCTTATCTACGAAGGGCTGGATTCCCTCAATGAATTCGGCTACGCCGCTGTGGTTGTGCTCGGCGACCCTGCCTACTTCGGCCGTTTCGGCTTCAAACCTGCCGCCGCCCACGATCTTCACTGCCGCTGGCCGGGCACCGAAGCCGCCTTCCAGCTCTACACACTGACCGACGATGCCCTGACTGATGCCCACGGCGAAGTCACTTTTCCGGCTGCGTTTCATCGGTTCTGATGTGAGCTTCACCCATAAAACCTAAGCGGAGCTCTCTCCGCTTTTTTGTCGCCAGTATTCCGCCGTTCGAACCCTCTTTTTTTCACCGGTATCAACACATTGATATTTATAGAGATCAATATCTGCCTGAAAAAAGGGTTTATCCACTAAAACCATCGCAGGACTTTAATAACACAGGGAATCAGTGTATTTTTCAACC # Right flank : CACGTTGCAAATCAAAAGATTTATCTGGAATCCTCACAGCAATTTCAAATATACCCGCTTTATTTAGCTTAGCGATTTACGCTATAGTCACCTCGCTGCGACATAATTCGCAGTCGGGTTTCGCAGCCCGGAAACTTATGAGGATACACATGATGTTTGCATCAAGTGTTAATGTCTTTGCACACCTATTACCCGTTCAGTTTAAACTGTTCAGTCAATGGTGGCTCAGGCTGGGCAACCTTAGGGTTGGCCGGTGTCCTCGTAGGCCGGTACTGCGAACCTTGTCTGAGCCATCACCAAAGAGTTTCGCAGCTCCGGTGTTGGTAATTATTACTACGAGGAGATGTAAATGAAAACGTCCCACAATCCTACCTTTCTGCCCTTTCTCACTTCTTGTTCGCTGCTTTTAATCATCAATAAAGGAGGTGGGCTATGAGCGTTAAACCTGACTGGCACCCCGCCGATATTATTGCCGCGCTGCGTAAGAAAGGCACTACATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //