Array 1 1390025-1387979 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014815.1 Geminocystis sp. NIES-3708 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1390024 36 100.0 39 .................................... CCTCTACCGTAAAAATACCAAACTTAAATTTATTAAATT 1389949 36 100.0 37 .................................... GTATCATTTATTGAGTGAGTATAAACTGATAGTCTAT 1389876 36 100.0 37 .................................... TCAGCAGATGCAACAGTGCATGAGTGGGACTGGAACA 1389803 36 100.0 36 .................................... AAATCTGACCCAGACCAAATTATTTGGGAAGAATAT 1389731 36 100.0 34 .................................... AGATGGACGAGAGCAAAAGGTCAAGTTTTGGAAG 1389661 36 100.0 35 .................................... AATCCGAATTTTTGGTCGACAGCACAGGAAATAGA 1389590 36 100.0 35 .................................... ACAATCGAAAACGTTGATAGCATTAAAGCTATCAT 1389519 36 100.0 35 .................................... CTATTGTTGCGATTATTTTTTTACTATTTTGTACT 1389448 36 100.0 34 .................................... TAGAAAAATAAATTGAGCATTTCTTTTTTCATCA 1389378 36 100.0 35 .................................... ATAGGCACAAAAATATTAATTATTTCCTGTAAATT 1389307 36 100.0 35 .................................... CTGTAAGCACCCCTGATGGTAAGATTCTTTACACT 1389236 36 100.0 36 .................................... AATCCCCAATCTATTAGCTAATTCAGTAGCTGAGAA 1389164 36 100.0 36 .................................... AGGAACTGACGATAAATTCTAAAGGTACTTTTTCTG 1389092 36 100.0 34 .................................... ATTATTTAAAAGGGTTCGTAGAAAGTGCATTAGA 1389022 36 100.0 35 .................................... ACTTTAATGAGGTATTGAAACAACAAAAAAATCAT 1388951 36 100.0 35 .................................... CTTCTATTGCTTAGAGAGTAAATGCCCGTTGAGTA 1388880 36 100.0 38 .................................... ATAGGAGCAAAAAAGAATCTACCTAGCAGGGGCTGAAA 1388806 36 100.0 39 .................................... TTGTAGAACAGGCAATTTTCTTTGACTATTTTGAGCGAT 1388731 36 100.0 37 .................................... AAATATTCAGCATGAGCTTTTATTACATTTTCTCTGT 1388658 36 97.2 38 ...................................T CGTACAATCTCTTACGCTGTGCCTCGGAAATATAGCCA 1388584 36 100.0 34 .................................... AAATTATAGTTTAAGTTTGGCATTACTTATTACT 1388514 36 100.0 35 .................................... GAAAATCTTTTCCCGTGAATGGGACTGTACTTTTA 1388443 36 100.0 35 .................................... ATACTGATATTTTTTCCCTATTTCTTTTGCAATAT 1388372 36 100.0 34 .................................... CCTTTAAATAATATGCTAGTACCTGTGGGAGGAA 1388302 36 100.0 35 .................................... AATTCAAATCGCTAGAAGGCAATCATGCTGTTATC 1388231 36 100.0 37 .................................... AATCCCTAATCTCTTCGCTAATTGAGTAGCTGAGAAT 1388158 36 100.0 36 .................................... TTTAAGTCTGAATTAGTCTGAGAGCTTCCAGAACCC 1388086 36 100.0 36 .................................... AGTTGTTATACTATAGTAGTCAAGGTTAAAAGGAGA 1388014 36 94.4 0 .................A.............T.... | ========== ====== ====== ====== ==================================== ======================================= ================== 29 36 99.7 36 CTGTTTAACCTTCGATCGCCATTAGGCGTTGATCAC # Left flank : ACCCTTTGCAGGGGATAATAACTTTTTATTTGATTCTATTGAAATCATCGAAAAACCTTTAGCACGTTGGTTTTATCCTCTTGAAGCAAAAACGAAACCAAATAGGGGAGTTTGTCGCTTAACCACATGGGTTGACAGAGAAGATAATACCAAAACTAGCTTACAAGTATTTTCTCCTACTGATTTTTGCTCTGAACCTCCTGAAAAAGCATGGATTACTTTACCTATAATTCAATGATTTGTGTTTTTGTTACAAGCACTTATCTCTGTCAATATCAATTATCGGAGAAAAGTGTATCAATCCATTATCCTATGGACATTAGAAGATTTATCCCTTAATTAATCCTACTTGAAAAATCCTCTAGTTATTGTATGACAAGGTTTACGACTAAAACGAAATTTAGTTTATTTTTCCAAAAATGATAGTTTTTTCTATTATTAATTTGTACCTTGAAAAGTTATCTAGGAAGATTTTCTATTAAAGGCTTTCAGTCTTCGCA # Right flank : GAAAGCAAGGCTAAAATATCATATTTTAACAATTAGCATCAATAAAATTCTGAAAATAATTAACAAGAAAATTAATACTGTCGATCGCCTTAGAAACTCTGTTGTTAACAATAATTCCCTTGTGCCATTCTGGATTGGAACGTAACCAATTAATATCTTGAATCTTTTTGATTTTCTCTTGCCAATCATCAGGATAAGATTTCATCAGAAAGGATCCTAAATGTCCTAGTGCTGAAAGAGTTATGGCATGGGAACAAATATAATCTTCTCGAATTTTACCAGAGCTTGTTTCTCCCTGAAAAACTTGATTCCATTGACGCATATATTCACATACTTTTTGCCAGTAATTAACGGCTATGTCAATTTGAATCTCTAAATCATCATCATCATAGTTAATCAATAGGGCTTGGGTAGCTTTGTCGATCGAACTTAGGGTAAATAGATAGTGCGATCGCATTGGCAAACTACTACGTTTCATCTCCGTTAAATCACGAAATATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTTAACCTTCGATCGCCATTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.70,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 1400605-1402283 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014815.1 Geminocystis sp. NIES-3708 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1400605 36 100.0 34 .................................... AGTGAAAGGGAGTAGAGATCCCTTTTTCACCAAT 1400675 36 100.0 35 .................................... AACAAAGCCAATTTTGCCTCTTTTGGTAGCACATT 1400746 36 100.0 35 .................................... CGTTATTAGTGGATGCGCAACCCCCACATTGTTTT 1400817 36 100.0 35 .................................... TTAAAGGTAATTTCTTTGAAAGCAAAGTCACAGAA 1400888 36 100.0 35 .................................... ATTATGTTTATGGTGCAGATCCTGTGATTTTTGCT 1400959 36 100.0 34 .................................... AAAAGAAGGGCAATAAAAAGACTTAATGCTGATA 1401029 36 100.0 33 .................................... TAAGGTGAGCATAAAGGTAAGAGCATTGAGGAT 1401098 36 100.0 35 .................................... AAAATGATTCTGACTCGTATGGGGTTTAAATCAAA 1401169 36 100.0 34 .................................... ATTTGCGGAAAAGGTTAGTTTTCGCCCGCAGATC 1401239 36 100.0 36 .................................... AATTTTGAATAGAAAAATATACCTCTTAATTATAGC 1401311 36 100.0 37 .................................... CGTAACAAAAAAGATTGAGCCATGTGCTTAATATCAT 1401384 36 100.0 36 .................................... AAACTTTTTCACAAACTAATAGTTTTTTAGCCAAGA 1401456 36 100.0 36 .................................... AAAAGCGAAAATAGCACAAAACGACCTCTTAGAAAT 1401528 36 100.0 38 .................................... TAGAATATAAAAGAAAAAAGCCCTACCGCCAAGCAGAG 1401602 36 97.2 36 ..............G..................... GACTTGGTACAGTGGCATTTTTAAGGTAAGTTGCCA 1401674 36 100.0 36 .................................... GATTTAATTGAAAAAAGTATAAGAGATGAAATAGGT 1401746 36 100.0 35 .................................... GAGAAATCGCTGATTTAGAGAATTTCTATATTAAT 1401817 36 100.0 35 .................................... GATTACGTACAGGCTTAATGGATTTTCCCTCACAG 1401888 36 100.0 37 .................................... TATTGGGGCAGTCCATAAAAAATAACTTTGGTTGGCT 1401961 36 100.0 35 .................................... AAAAGAGCAAAAGTATAATTTTCTCTTTAGGGGAT 1402032 36 97.2 36 ....................G............... AGGCTCAGTCTAATCTAGGGAACAGTCTTCGCACGA 1402104 36 97.2 35 ....................G............... TTGATGGTAATCTTTGCTCCCCCCATGACTTTACG 1402175 36 94.4 38 ........A...T....................... CCGGAGAGGTAAAAGCCTTTTTATCTAGAGCTACGGAT 1402249 35 80.6 0 .....A...............C..A.....-..TTA | ========== ====== ====== ====== ==================================== ====================================== ================== 24 36 98.6 36 CTGTTTAACCTTCGATCGCCATTAGGCGTTGATCAC # Left flank : GTTGTCAAAAAAGATGGCGTAAGGCTTATAAGTTATTGGAAGGTTATGGGGAAAGAATCCAATATTCTATATTTCGTTGTTGGCTAACTCAGAGAATGAGGGAAAAGTTGCGATGGCAATTAGAGAAAGTTTTGTCAAAGGATGATGACTTAATTTTAATTCGTCTTTCTCATCAGTGCGTCCGTGATATTCCTAAATATAATCGCCCTAATACATGGTTATTGGATGAAAATAAGTTCAAGATTCTCTAAAAACAAGCGTTGGTGTTTTTCAACGGTTAAAGACAAATAATCTTAACTCAATGTCAATGACTATCTTGGTTAGAAATTTTTTACTAATCCAGAGGTGCTTGTAAATGCCTGAATGCCCTGTTAAATATTGTTTCTAGCTGATGATATTTTGCTGAAAATTTGCTATATTAATCCTAGAATCTAAAAAATTTTTTGCACCTTGAAAACTTAAATATCAGCTATTGTACTGTAAGGCTTTCAGGATTCGCT # Right flank : ATGGTAAAAAACTAGAGAAAGTTTGGTTACTAAGTTTCCAACTTTATTATATAGTTTCCAACTTTATTATATAGTTTCCAACTATATTGTTTTTGGACAAGGTGGGCAATGCCCACCCCAAAGTTATTCTACTGTGACGGATTTGGCTAGATTACGAGGTTGATCTACATCTAAACCGCGCAAGGATGCAATATAATAAGCTAGTAACTGTAATGGTATTACTGCTAAAATAGGTGATAACAATTCTTCGACTTCAGGCACAAATAAGGCATCTTGAAATATATCCTCTTCTTTATTTTGGGGTAAAATACCAATTAAACGTGCGTCTCTAGCTTTTGCTTCTTGCGCATTAGAAATAACTTTTTCATATATACTACCATTCATGGCGATCGCAACTACGGGGACATGAGCATCTAAAAGGGCGATCGGACCGTGTTTCATTTCTCCTGCGGGGTAGCCTTCAGCATGGATATAACTAATTTCCTTAAGTTTTAATGCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTTAACCTTCGATCGCCATTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.60,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 2111973-2118063 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014815.1 Geminocystis sp. NIES-3708 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2111973 37 100.0 35 ..................................... AAATGTGTTACAAATCAAGGATGAGAAAGGTGAAG 2112045 37 100.0 34 ..................................... CTCTTACAGAATCCGAAAAATAATCCTCACCAAA 2112116 37 100.0 38 ..................................... GGATATTGAGAGAATTTTCTGTATCAGGCTTAAGATTT 2112191 37 100.0 38 ..................................... GGAGAGGAAATCTATTCGGGAGTATCGCGCTCATGGAA 2112266 37 100.0 35 ..................................... GATTTTTTGCTCAACAATAAAAGGATTTCCTTGAC 2112338 37 100.0 34 ..................................... GTTTTTGAGAATGCTTACGAGTGGATGAGTGAAG 2112409 37 100.0 38 ..................................... ACTTTTTCGGCAAATTCATCCAGCGGAATTCCTGCGAT 2112484 37 100.0 33 ..................................... TTGACTATTATTTTGATTATTATTCTGATTAAT 2112554 37 100.0 34 ..................................... CTTCTGAAATTTTTTGAGAAAATAAACCAAAGAT 2112625 37 100.0 37 ..................................... TTTCTTGGATTTGAATTAATCTATATTTCTGTGATGT 2112699 37 100.0 34 ..................................... ATCATCCCGCCGAACATTCTTCTTTAGGGCTGGT 2112770 37 100.0 36 ..................................... ACCTGAAACGAATCCCTTAATTTACCAGTATCGACC 2112843 37 100.0 40 ..................................... CGTAAAAATCGCTTTAGTGGCACTGAACTCAATTTGTTTA 2112920 37 100.0 34 ..................................... GGGTATTACTAAAATTACTACGGACAATATAGGC 2112991 37 100.0 35 ..................................... TTACAGCCCGTGAGGGATCACTTTCAAAAGCCTGT 2113063 37 100.0 35 ..................................... CACCAATACAACAATGGTGCTGATTTTAAGATAGA 2113135 37 100.0 35 ..................................... GCAAACGCCTCAGTCGTTATGTGGCTTCAGCGAAT 2113207 37 100.0 39 ..................................... ATCAGATGATATATCAGATTGTATATCAAGATTGCTGTT 2113283 37 100.0 34 ..................................... TCAATCTTTAAACCCTTTTATAATAAAGAGCTAG 2113354 37 100.0 37 ..................................... TATTTCTCTAATGGGGGAGCTAAAAATCGTCAATGTA 2113428 37 100.0 44 ..................................... TTAAACTAAATGATAATACTTTATCTGAAACGCTTATTAAGCAA 2113509 37 100.0 35 ..................................... GACAGCTTCTTTATTAGCGATCGCTTTACATAGAA 2113581 37 100.0 40 ..................................... GTTTTTGAGGTAACAAATTGGCTTTAATCTCAATGGTGCT 2113658 37 100.0 33 ..................................... TAAGATACATAATATATTTAATGGGGATAGTAC 2113728 37 100.0 34 ..................................... AACATAGGAGGTATCGTAAAGAATAAAGATAATA 2113799 37 100.0 35 ..................................... CAAGATGGTCAAATTTTCCGTACTGAGGATAAAAA 2113871 37 100.0 36 ..................................... TTATTTTGGGGTTTTTGTAATTACCTTCTTTTTGGA 2113944 37 100.0 36 ..................................... AACTATCCTACCGCCCTGTAGCCTCATGCGATTAAT 2114017 37 100.0 38 ..................................... ATATCAACGTTTCCAGCTTGTTATGGTATATTGGATAA 2114092 37 100.0 34 ..................................... ATTAAGATCATCGTCGCTAATAGAATCTAAGCGA 2114163 37 100.0 38 ..................................... AATTAACAATTACGGCGGTGAAATTCCGCCACTAAAAG 2114238 37 100.0 37 ..................................... ATTAGACCCATCCATGTAAGGTGCTTCTTTCATTTTT 2114312 37 100.0 35 ..................................... ATTCAATTCCTTTTTCGATATAATTTATCATACGT 2114384 37 100.0 38 ..................................... GTCTCCATCTCCATAAAGTACTTTCTGCTATTTGTAAA 2114459 37 100.0 35 ..................................... GCTAATACGACGTTTGAGGTACGAAAAAATAACAG 2114531 37 100.0 34 ..................................... TTTAAATAGTATTAAAAGTATATTAATCAAAGAT 2114602 37 100.0 37 ..................................... TTCAATAACACTACCTTGTCCTCCACAGATAAAGAAA 2114676 37 100.0 38 ..................................... TTTTCCTAATTCAGAAAATAAAGCTAATGTGCCTTTTA 2114751 37 100.0 36 ..................................... GAATTTCAGGCATGGTGTAAAATCTTTTTTTTCTTT 2114824 37 100.0 36 ..................................... AGCTTACAACTGCGAGAAAGTATCTGTAGCTAATGC 2114897 37 100.0 35 ..................................... AGTTTGTTCTGCAAGAGCAATAGCTTCTTTATAAG 2114969 37 100.0 36 ..................................... TTATTTTTCTTTTGTGCCAGTCAGAGTCGGTACGGA 2115042 37 100.0 37 ..................................... TAAAGAGATTTCCATTATACCTTATTTTATTTAGAGA 2115116 37 100.0 36 ..................................... AATTACAAAATTAAATAATCATTAATCTTGCCACTG 2115189 37 100.0 35 ..................................... AATCTAATACTGGAGCTGATAGCGTGGCTGGGAAT 2115261 37 100.0 34 ..................................... GAAGAGAAAAAAATTAAGGAGGATTTAGGGAAAG 2115332 37 100.0 34 ..................................... AACAAATTCAATATTTATCTGTGGAAAACCACGA 2115403 37 100.0 37 ..................................... TTATTCCTTACTAACCTTAATTGATTGTTTTCTAGTA 2115477 37 100.0 37 ..................................... AGCAACTTTTTGTTGAGACATACGAGCGTGTTTGCCT 2115551 37 100.0 38 ..................................... TAAATGCTAGTAATGCGGTGGGGAACGGTGGTACGGGA 2115626 37 100.0 40 ..................................... TTGGGTTGCCATTTTCTCGCATACTCAGCAACATCAAATC 2115703 37 100.0 34 ..................................... ATCTAAGTAAGAATTTAGAGTACTTACTAGCTTA 2115774 37 100.0 33 ..................................... AGGTATAAGATTAGTAGTCATAGACTCTGTACC 2115844 37 100.0 36 ..................................... AGTTGTTCTATTCTTCAGACTAGCATTAGCAGTATA 2115917 37 100.0 36 ..................................... ATCAGCATCTGTACCATAATTAGGTTGTCCAGTACC 2115990 37 100.0 39 ..................................... TAATTATTGCTCGTTATTTCCTATGATATTAATTCTCAA 2116066 37 100.0 38 ..................................... TTTAATTTCTCACTTAAATCAATAATTTTATCAAAATC 2116141 37 100.0 35 ..................................... TAAGCTACGCCCGTAGGATACGAAACATAGAGAGC 2116213 37 100.0 36 ..................................... AATCCCAAAATAATATAAATTATCGTCTATATACTC 2116286 37 100.0 37 ..................................... TTTGTTCGAGATTTTTAGCGGATTCTTCTGAATGCTT 2116360 37 100.0 36 ..................................... TAAATACACAACTTTAACAGAACTGGAGTCGATAGA 2116433 37 100.0 36 ..................................... CATTAAGGACTCGAACTCAGCCTTAGATTTGGGACT 2116506 37 100.0 34 ..................................... ATATAGAACTGCCGTAGACGAATTAGAGAGAACT 2116577 37 100.0 39 ..................................... TTTTAATGCCAGTGGTAGTTTAAAGTTTTTAATACATTT 2116653 37 100.0 35 ..................................... GTCGAAGTCTATAAGGAGCAATAGCTATGGCGGGA 2116725 37 100.0 32 ..................................... AGTAAAGAAAAAGGTCGGTAATAACATACCTT 2116794 37 100.0 36 ..................................... AGCTAATCGATTAGTGAACAATGATATGTCTTTTGA 2116867 37 100.0 35 ..................................... AAATCAAACTCAGAGACAAAATCAGCAACAAACCT 2116939 37 100.0 40 ..................................... TTAATGCCAAAAGGCAACAAATCATCTCAGGTGATTTACC 2117016 37 100.0 34 ..................................... TTAGTGTAAACGCTCCCGAGTTACAGGACTCAAG 2117087 37 100.0 37 ..................................... ACTCAAGATTTTGAAGACGGACAATTACAAATCGTCA 2117161 37 100.0 35 ..................................... GTAATGCTTAACAGCCACTGCATACATTCCATTGA 2117233 37 100.0 37 ..................................... AAACAACTGGCAATACCGCCAACCCCCACTCAGTCTT 2117307 37 100.0 35 ..................................... CGAGAAGACATAACCCTACTAACCCTATTATGAGC 2117379 37 97.3 34 ............................A........ GTGATAAAATCATTGTCCATCTTTATTTTTATTT 2117450 37 100.0 35 ..................................... AAAGAAGGATATGACTTTGATACTGAAATATTTTT 2117522 37 100.0 34 ..................................... TTATCTTTTTAATTTTCCGATCCCTTTTTAAAAG 2117593 37 100.0 35 ..................................... GGCTCAAAGTGCTTTAAGTCAAGATCCTAGTTTAG 2117665 37 100.0 34 ..................................... AAACGATAATCGGAAAACAGGAGATTTATCTTAT 2117736 37 100.0 37 ..................................... GTTCCTGCTTCTTCGTGGCGTTCTGGTTCTGTTCCCT 2117810 37 100.0 34 ..................................... TGCTAAATCGATTTATTTCGATAAAATACTGAAT 2117881 37 97.3 36 ...C................................. TGGTGTGATCGCACCTGTTCATTCTCTTTCTGGTCT 2117954 37 100.0 36 ..................................... CGTTAAAAGAGAATCTTGGAGAAGATTTATTTATTA 2118027 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 84 37 99.9 36 GTTTAAATTATTATTAATACCTATCAGGGATTGAAAC # Left flank : GTATATAATTATTAGTTATGATATTACAGATAATAAAAGACGTACTAGAATTCATAACATTTTAAAATCTTATGGTGAATGGGTACAGTATAGTATTTTTGAATGTGAACTCACCGAAACACAATATGCAAAATTACGTCATCGTCTCAGTAAATTAATTAAAAAAGATGATAATGATAATATCCGTTTTTATTTTATGTGTCGTTGCTGTCAAGGTAAAATAGAGCGTATTGGCGGTGAATTACCTAGAGATAATACTATGTTTTTTGTCTAATTTCCGTAAAGGAGAGGGTATAAAATTGGTTTTTCCTTCAAAAGTTTTTATCCTGTTTATGCCATAACGGTTTTGGGTTTTTCTATCTTTGATAACCTTACGTACTTTATGCTATAAGTACTTCAGCATTTTTTATGGACATTCTATTAATTTTTATATAGAATTTGAGTGGGCTTACGCAATTGTACCTTGAAAACTTTATCTATCAATAGCTTTGTTCAAGGCA # Right flank : CCAACCTTCACCTCGCTTTGATGAGCATTCGGTTACGCTATCGCTCCATCATCCGAGGGAATGCACTCTTACCATCATCATGAGTTGTCAAGGTTCATAATTTTAACTTCGCCCAGTTTGTTAGACTTTTGCGAGGAAAGAATCCTACGATATAATCTAACTTTTACACCTTTGTGGATTAGTTCACTCGTTACTTAAGCTCATGATAAGTTTATCATTATTTATATTTTTAAGCATTTATACTATTTATTCATATTACATTGAACCATTCTTTCTGCTAAAACAGAATATAGTAGCCTACCTCCTGTAATAGAGTATTCAGGGCGAGGATTAGGAAAATGTCCAATGGGTGCTGTAGCTGTATAGTTAAGATTTTCAATAAAAATAATCCAGTCGTTATCTTTACGCCAACCAACACGATCTCCAAAACGATTATAAGCGTCATCGCCAATAAGTCTTCCGGGGCGATTTCCTGTTTCAATATATAGAGGTAGTTGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTATTATTAATACCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 2553978-2554600 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014815.1 Geminocystis sp. NIES-3708 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2553978 37 100.0 34 ..................................... GCGGTAGTACACCATATAACTGGAAAAAAGGAAA 2554049 37 100.0 38 ..................................... ATAAAAAAAAAAACTGACCAGATGTGACCAGATAAAAA 2554124 37 100.0 34 ..................................... TATCTCGAAGCTGGAAACTAACAAGTGCCATTTT 2554195 37 100.0 40 ..................................... ATAAAATTCTAAGTGTGCAATCAAATCATCCTCACTCATT 2554272 37 100.0 34 ..................................... TTTTTTACTCACGCTACAGCGGAGATATACGGGA 2554343 37 100.0 35 ..................................... AAAAATAGTAGATGACGGTGTAGTAATAGTAAGAT 2554415 37 100.0 39 ..................................... AAATAAATCATTTAAAAGTGCAGTAGCCGCTAAGTTAGC 2554491 37 100.0 36 ..................................... TAGGAGATCTTCTCTTAGATGATTTTGGAATTAAAT 2554564 37 83.8 0 .......................G.C...T..AT..T | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 98.2 36 GTTGAAATAAGAAAATACCTTCTATAGGGATTGAAAG # Left flank : AGCCTTACAACTTGTTTTGAGTAACACAGAAAAAAATCTCAAGAAAAAATAACACAAAATTAATTTCTTGAGATAGACTAAAAGTAATCGTGCCGCAGATCAAGTTGAATCAACCACTGTTCTGTGAAAAGTAAGGGGTAGTTTGCCGAGAAATCGGTTTGCTTTCTGTCCCTGATAACTGCTCTCTCTGATGCTGCGTACTGAAAAGTGCGGAAACAAGGGGCACTCCCAGCAATAAGAGTTTAGGTGTACTAATGTAGTGGCTATCAAATTACCTCTGAGCAAGGAGGAATCCCAGTTTAAGCGTTAGTTAAAATGTACGAGTTACACAAACTCAAGTCTTAGCCTTACGCAATCGCTAAAACTCTTATATATTAACAGAGATAGCGTTTAAAGAAAATGCAAAATTCGATCAAAAATCAGAATTTTCGTATTTTTAAGGGAGGCTTACGCAAACTGCTTTTATAAGCTTTATTCTATAAGGGGTCTGGCTAGGGACA # Right flank : TATTAACAGTGCCGTAGATCAAGTTTTTGTAACCTCTGTTCCATGAAAAATGAGGAGTAGTTTACTTTTTACTAAAAGTTTGCTTTCTGCTCCTGCTAACTACTTGCCCTGATGCTGTCTATCTGCGGATAGAGAAACTAGGTGCACTCCCAGCAATAAGGGTGCAGATGTACTGCTATAGCGGTTAGTAAATCACTTCCGATCAAGGAAGAATTCTCTTGGAGAATTGAAAGCGAGTCTCTCCACGCCCAATTAGATGACACTAATTTGTTATCACGTCATTTAATTTGTTAAGACGACACTAATCTGTTACTGATGACAAATAATTTGTCACTGTACACAAGTGGGTTACACTCACTCTGAAATTTTTCTTTTATTATACGGGCGTGGAGGGACTCGAACCCCCGACCTGCTGATCCGTAGTCAGCCGCTCTAATCCACTAAGCTACACACCCTTTTTTTGAACACTTATCCATAATAACAAATGAACCATAAAAATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGAAAATACCTTCTATAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //