Array 1 127578-125960 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADKE01000023.1 Escherichia coli T426 supercont1.23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127577 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 127516 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 127455 29 100.0 32 ............................. TTACGCGCCTGGCTGGCGAACCGCTGGAACTG 127394 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 127332 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 127271 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 127210 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 127149 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 127088 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 127027 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 126966 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 126905 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 126844 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 126783 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 126722 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 126661 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 126600 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 126539 29 100.0 33 ............................. ACGAGGTACAGTGGTGCAAAAAACAAATTATAG 126477 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG C [126472] 126415 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 126354 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 126293 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 126232 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 126171 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 126110 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 126049 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 125988 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154613-153972 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADKE01000023.1 Escherichia coli T426 supercont1.23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154612 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 154551 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 154490 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 154429 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 154368 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 154307 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 154246 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG C [154241] 154184 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 154123 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 154062 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG C [154053] 154000 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : GGGTGGCGGTGGTGCTGTAATTCACACCGGTAGAGTTCCCCCGCGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAACCGACTGGTTCTGTAACCCAAATTTGGGATCATTCGAGTTCCCCGCGCCAGCGGGGATAAACCGACTATCGGCGCTGTTCAGTTGGGACAGAAACAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTGCCTTCGACTTTGCGGATCACGTCGTCTTGAGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //