Array 1 131482-131154 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITA01000023.1 Hafnia alvei strain PCM_1190 671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 131481 28 100.0 32 ............................ ATAACTTGGCGGAGGGAACGGTTGATAAGATT 131421 28 100.0 32 ............................ CTGTGCAAGTCGCAGCGACTATCGCAAACATT 131361 28 100.0 32 ............................ TGCCTTTGCTCCGTTCGCCGGTGAAATTGCTC 131301 28 100.0 32 ............................ ATCAATGAGCCGCATCTAAGAGTAAAAACCAA 131241 28 100.0 32 ............................ TTTAAACAACGGCTCTATCCCGGATGGGCGAA 131181 28 71.4 0 .C.......T..........A.A.TTCC | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATTGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCCGAAAATGCCCTACAAGCGGCTAACCGCAAATTTGAGCGCCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAGGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAATAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : TCGTCCACTCTATTTTTTACCATCTGGTTGCACAATTCCTCGTGTACCTAGTAGAAACAGCAACGTCATTAGCGCCATAGCCAGTAGGCCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGTTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGCGTGACGGTGATGTCTGCGATTCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAGCGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGCGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATGATCTGTTAAAACTATGCACTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26463-27151 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITA01000040.1 Hafnia alvei strain PCM_1190 693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26463 28 100.0 32 ............................ GAAAAAATAGACAATTTACCCGCACATAATGC 26523 28 100.0 32 ............................ AGAAATTAAAGGTATTCAATAATGACCATTAA 26583 28 100.0 32 ............................ ATCATTAGTAACCACATACGAATCCGGCACTA 26643 28 100.0 32 ............................ CATTCAGTGAGGGTTATCGCGGTAGGTTCGGG 26703 28 100.0 32 ............................ ACTGCGTTGTTTTGCACACTGCCCACCTCCGT 26763 28 100.0 32 ............................ ACTGTGACTTCTTTACGCCTAGTGGGAAGAGA 26823 28 100.0 32 ............................ GTTACCACCTCACCTTCAACTAAACCACAAGC 26883 28 100.0 32 ............................ GCATAGTGGCGCTATCTTTGCTGAATGCTTAT 26943 28 100.0 32 ............................ TCAATTCTTTTGCTGTGAATGCGTCACCCCGG 27003 28 100.0 32 ............................ TCAACCTCCATCACTTAGCATTGGTTAAGTAG 27063 28 100.0 32 ............................ ATCAGGTAACACCGGTTCCATGCTATTACCCC 27123 28 92.9 0 .....................A..A... | T [27143] ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTCGGTGCCATAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCAAGACCTGCTAAGGCCAGCAACCGTATCGATCCTGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCCATCTTTCCTGTGTGATCCGAACGCCACTCTCTAGCGATTCCCCTAAACACGATAAGCTTCCACGAACCCTTTTTTTCGCCTATTTATAACCCTTTGATTTTATGTAATAGTTTATCACGAAGATAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : ACAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGGCTCCCATCAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACATATCAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGGGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 89824-90811 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITA01000046.1 Hafnia alvei strain PCM_1190 699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 89824 28 100.0 32 ............................ ATAGAGTTACCCACTGGATGAGGCTCCCTGCC 89884 28 100.0 32 ............................ TAGATATTGCATTTCAAAATTTGAATATTGCA 89944 28 100.0 32 ............................ GTTCTGTTATGAAAACCCATGATAAACACATT 90004 28 100.0 32 ............................ AGCGTGCGTTTTGGAAGTAGATTGCATCCTCT 90064 28 100.0 32 ............................ AATATCACAATCAACGGCAGCAACAATCCGGT 90124 28 100.0 32 ............................ TCAATCGTTTTTTATACGCGGCATTGTTAAGC 90184 28 100.0 32 ............................ ATAGCTATTACATCAGATTTTCTTTATGTCAC 90244 28 100.0 32 ............................ TATCCAGATAATCCAATCGGTCCGCGTGCATA 90304 28 100.0 32 ............................ GTGCTATTGCGCCCCATCGGTTGTGCTAAATC 90364 28 100.0 32 ............................ AAGATCACGAAGATAAGACAACTGGGCATTTG 90424 28 100.0 32 ............................ ACTAAAACTCCTGCGTTCAGACCTCGGCATGA 90484 28 100.0 32 ............................ ATGTTGGCACTTTTCAAGTTTACCGATGCTAC 90544 28 100.0 32 ............................ TTTGCCATTGTTATATTCAAACCAATGACCGG 90604 28 100.0 32 ............................ GGTGCGGAGGGAGGGATTAGCAATACGCTCAT 90664 28 100.0 32 ............................ CAGCGACTCTATATAGCGCTTTAATGTAGAGA 90724 28 100.0 32 ............................ AGAAAAGTGAAATTATCCCGCTGTTAGAGCAG 90784 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATAGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCTTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAGCGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCAGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAATTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGCACCTTTCTGCGAATATCCTACA # Right flank : ACTCACCATGGTTTGTGTTTAATTTTATTCGCTATGTATCAACGTTAAGTCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATACTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTCGGTTTTTGCGGCGGAGGGGGAACACCCTTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 99361-99687 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITA01000046.1 Hafnia alvei strain PCM_1190 699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 99361 28 100.0 32 ............................ ATCACAACCTGTAAGCGAGTCTTACAAGCTGC 99421 28 100.0 32 ............................ AAAGCAAATAGAAACCCGTCTGGAGACGTGGC 99481 28 100.0 32 ............................ AGCAACGAGATCGTTTTTCGCGATTTCAAGCT 99541 28 100.0 32 ............................ GTATCCATGCCAATCTAGAGGATGTGTGAGTG 99601 28 100.0 31 ............................ GTGTTGCGCACACGCTGTGCCAGTTCGCGAA 99660 28 78.6 0 ...C.................CA.A.TT | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTAACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCAGAAAAAGTGGCCTACCGAACGGTTAGTCGCGTGCAGGTAAAAAGCAGCGCGGAGAGGCTACGGCGCAGATCGGTGAAAAAAGGTTGGCTCACCGAAGAACAGGCTCGTCTGCAAATTCTCGATGCCAATGAACAGAGAACCTCGTTACCTTTTATCGTGCTTAAAAGTTTGTCTACTGAGCAAATGTTCCATCTGTTTATTCGTCTGGGCGAACTGCAAACGCAGCCAACGACGGGAAAATTTAGCAGCTATGGATTAAGCGCAACGGCAACGATACCGTGGTTTTAGTTTGTCATCCGCGTTGATATCCCCGTGCTCATCAACGGCGGGGATATGTTTTATCTAACGATCGAACAAATCTAACGAACCCTTTTTTTGAAGGTATATCTAAGTTGTTGATTTTGAATACCAGCAACTAATGCGCAGAAAAAAGGGTCAAACCCACTCAAAGTGAATTAATGGTTTGATAGGAAAAGGTTTTTGGCTGATTTTCAACA # Right flank : TATCATCTGCCCCATTTTCACTATACTTATTTCAGCGCTGCACCTTTGTTGCAGTATTTGAGTTAACTTTTGCTGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGTGATGAAATATGGTTTATCTGCAATCGACACCTACGGACGGTTGCGCTTTTACCTGACACTACCGATTTCAGGCGTCCTATTGTCTATTGAGTATGGGCGCGAGTGTTCCAACTGCTGTATTTGAATGAAAAACCATCGCCCTAGACGCCATCCTATTCCCGACGTATAAATATTCTCAGGCGTATAACGAATTAACCAACGTGTGAGGAGTTATTTGATGACAGCATTAGCCGTGGTTTTTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //