Array 1 1963-2974 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPG01000003.1 Halocalculus aciditolerans strain JCM 19596 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================= ================== 1963 30 100.0 36 .............................. CTCGGTGTGGCCGATGAGGAGCGCGGAGCCCTGCTT 2029 30 100.0 36 .............................. TACCGGGTATCGGGCCGCTGACGAGCACGCAAACGA 2095 30 100.0 34 .............................. CGCCCGTGAAGTGGCGCATCGGCGCACCGACCGA 2159 30 100.0 37 .............................. CCGTGGAAGGCCCGCCATGACACGACAAGAGTTAAGA 2226 30 100.0 34 .............................. CCGGTCTTTGTCACATCACTGCTGTCTCCCTCGT 2290 30 100.0 35 .............................. GCCTAAGTGCTCAGACGAGCGATTTTGTCGCAGGA 2355 30 100.0 36 .............................. CCGGTTCGCGCGGCCGCCGTCGCTGGCGTCGTCAAA 2421 30 100.0 35 .............................. GCGCAGATGCCGCTCGGCAAAAGTGACGGGAGCGT 2486 30 100.0 36 .............................. AACGTCTAATCCCATCGGGCCAAAGTACGTCGTCAG 2552 30 100.0 35 .............................. GACCGCCGCGGCATCGACGTCGATATCGACGTCTT 2617 30 100.0 35 .............................. CCGCTCTCGACCGGAATCTCCATCACCGCGGCCTC 2682 30 100.0 35 .............................. GATCTGATCCGCTCGGTAGCCGACTTTCGCCCCGC 2747 30 96.7 33 ............................T. CTTCTCGCCGCCCTTCCACGGAACGGTCTTGGT 2810 30 100.0 105 .............................. CCAGCAACAGCTACGTGAGTAGAAAGGAGAGGGGTGTGTCGAGTGACACGCCCGCCTCACTCAAACCAGTTAGTCGTGAGTCTCGAAGGGACTAATCCTTTTCGC 2945 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================================================================================= ================== 15 30 99.8 40 GTTACAGACGAACCCTTGATGGGTTGAAGC # Left flank : TTCGGAATCAAAGCCGACAACCCGACTCGGTAATGCGGTCGCAGTCCGGATTGACGACAGTGGGGACGACTCCCACCGGACGATATCGAGTCCGCTCACCCCAGACGAGATGAACGAACCCGTGCACGCTCGCCCGCCGCGCGACGCACACTACAAGCACGCCGCCGGTGGGACGACCGGCACGTCGAACCAGTCCACTGAACCCAATACGCCATTCGTCGACAGTCAAATCGGCCCGAGTACGTAGTCGAAACCGGTATGCGCAACCGGAACGAGGAGCAGCGGTACTCGCCGTGTTTCCCTCCGAATCCCACGACAACGTCGGACAAACCACCCAGAGCCGCGCACACTGCCGAACGGATTCCAGTCGACCGCGACGGATTCGACTCAGAAAACGACGCATCCGTCGACCCCCCGGGGAAACAGGGGTACCGACGGTCGACGGAAACACCCAAGTGAAAACCGGCTGTAGGAGCGTTGAGTGCCCAGAGCCGGGCACC # Right flank : CGTCATCGATATCGTCGCCTTCGCCGGCCTCACCGTGTTACAGATGTCGTCTCGGATGAACTCGGTCGTTTTCGAACCTGCCACCGCCCGTCAGTGTACTTCCGAATCAAACGGGTCTACGAGGGGAGGAGTCAAGGTCTAGATCCGGGTGGTACGGTTAGCGGACGGTTTGGTTTCTTAGGAAGCAGACGGTCCCGGTCGGAGAAGGGACGGACTACAGACGGCGAGTTCTGACATCGGAGCGGAGCGGAAGTGGCGTCCGTCAGACACCGTCTAGCCGAACGGTGGGAGAGACAAGGATAAACGTCTCGGCGTCGATACATACTCCCAGTAGATGCCGACATGTGACGGCGGCGGGAAGAGGCCGGTGCGGTTCGAGCGCGCCGACGACGGCCTGGGCGTCGTCGTCACCGATACCGTCGAGGAGCGCTCGGTGACGGTGCACACCGACCAGCCGCCGTCGTTCGCGCCGTCGGACCCCGACTCCTTCGTCGCGCCGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGATGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 205036-206176 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPG01000002.1 Halocalculus aciditolerans strain JCM 19596 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 205036 29 100.0 37 ............................. AGGCGTCCGCGAGAATTGCACGCTCGTAGGCGTCCTC 205102 29 100.0 38 ............................. AGAGGATGCGGCAGACGAGGGTTGGGGTTGCGCGTCCC 205169 29 100.0 35 ............................. ATGCCAACACAAGCATCCGGTCATTCTCAGACGTC 205233 29 100.0 37 ............................. ATCGTTGTGGTTAATCCACGTAACGGGCCCGTCGTCA 205299 29 100.0 35 ............................. ACTCGGCGCGTTCGGCACAGTCAGACTGTCGTCAA 205363 29 100.0 36 ............................. GCTCAAGTTCGGCGTCGACGACGGGCGATGCGGCGT 205428 29 100.0 36 ............................. GCAGTACCATCCCGGATTCGTACCTCTACGGCGAAC 205493 29 100.0 36 ............................. GGAACTGGCGCTCGGTCAGGACCTTCTCTCGGCTAT 205558 29 100.0 35 ............................. GTCTTCGCGCGCGTCTTCGAGGCAGACGATTGCGA 205622 29 100.0 36 ............................. TCTGATGCGGCCGACGCTCCGCGAGCTCGACGACCA 205687 29 100.0 37 ............................. TGTGATGCCGAGAAGCTGGCCGAGGAACGAGAGGACG 205753 29 100.0 37 ............................. TGCCGACGAGCACCTGCCGCGGGTGCTCGCACACCGC 205819 29 100.0 37 ............................. TGCCGACGAGCACCTGCCGCGGGTGCTCGCACACCGC 205885 29 100.0 38 ............................. CCTCGCTACCAGCGGTCTCGCCACCGCGGGCGTCCTCG 205952 29 100.0 35 ............................. CGCTCACGACCGTTCGACGGCTCACGACACGGTGC 206016 29 96.6 35 ..............T.............. CGGTATGGGAGAAATCGACCTTCTCTCGCTCTCGG 206080 29 93.1 38 ........T...................T CGGGACGTAAATCCCGAAGAGGAGGGCCTCGTTCCAGT 206147 29 75.9 0 ..............T.T.....T.A.GGA | T [206166] ========== ====== ====== ====== ============================= ====================================== ================== 18 29 98.1 36 GTTACAGACGAACGCTAGAGCGGTTGAAG # Left flank : TCCGCCTCGAAGCCTACAAACTCAAAAAACACCTCCTCACCGGCGAAGAATACGTCCCCCTCAGGCGGTGGTGGTAATGCCCTACATCATCGCCGTCTACGACGTCGACGCCGACCGCACCCACCTCTTCCTCAAACTCTTCCGCCGCTACCTCACCCACATCCAGAACTCAGTCCTCGAAGGCTTCATCACCGACGGCCGCCTCCAACGCCTCCGCGGCGAAATAGAAGCCCTCCTCGAACCCCACGAATCCGTCCTCATCTACGAAGTCTCCAGCGAAGACTACGTCGACCGCACCGTCTTCGGAACCGACCCCAAAGCAGACGACACCTTCCTCTAACCGTCGACCCCCCGGGGGTTCAGGGACTACTAACGGTCGACGGAAACGCGGGCCGACCGGGCTCGCCGCGACGGGCCGCGTTCAGGGACTACTAACGGTCGACGGAAACACCCAAGGCAAACCCCACAGTACAAGCCCTACACGCCCCGAATCGGGCATG # Right flank : ATCAGGCGTGCGTCGATATATCACGGTCTGTGGTACGGCGCCCTCAGGAGAATTGGTCTTCGACGCGTTCGTCGGCGTCTTCGGCGTCTTCGGTTATGGCTTGCTCGCGGAGTTCGCTCTCGGGGTTGTCGATGTAGTCGAGGGCGGTGTCGGTGAAGGCGCCGGTGTCGACGATGGAGTCGCGGTTGTAGGAGAGGATGACGCCGCTCCATTCGCCGAGTGGTACTTGGAGGACGACGACGTCGTGGAACCAGCGTACGCTCATGTCGAGGTGGCCGAATCGTCCGAACTCTGGCTGTTCGATGTCGTCGTCGAAGCCTTTCAGGATGAGGTTTTTCGCTAACTCCTCTTCTTCCTCGGGGGAGAGGGCGTCGCTCAGGTCCGTTTGCTCGAAGACGACGTCGTACTCCTCGCCGTCGTACGCGATGGCTCGGCGGAGCTGGCCGATGTCCGCGTCGTGGAGGTGGTCGATAAGGTTTCGAGCGCCTTCGTGCATCACC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACGCTAGAGCGGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 270162-270778 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPG01000002.1 Halocalculus aciditolerans strain JCM 19596 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 270162 30 100.0 35 .............................. GAGCGGGCGATGCGGAAGATGGAGATAGACCGCGA 270227 30 100.0 36 .............................. ATCTCTTCGAGGCGCTCAATGGCCGCGCGGAACTCG 270293 30 100.0 34 .............................. GACGCCATCGACCGACTCGTCGAGGCCGCCGACG 270357 30 100.0 34 .............................. GCAACCAACACAAACCATGAGTGAAGCAGTCGCC 270421 30 100.0 36 .............................. GACAGCGACGTCATGGTCAACTGGTACCGCGTCCTC 270487 30 100.0 36 .............................. GACAGCGACGTCATGGTCAACTGGTACCGCGTCCTC 270553 30 100.0 35 .............................. GCCGTCGTGGCCCCGAAGCTCGCCGAGGACCGGGA 270618 30 100.0 34 .............................. CACGGCCTGCTGAAGGAGGTCCCGAAGTCGGCGC 270682 30 93.3 37 ........T....................A TGGATGCGGAAGTCCGGGTTCTTCCAGGGCTCGATGG 270749 29 90.0 0 ....................A..G..-... | T [270768] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.3 35 GTTACAGACGAACGCTTGAGCGGTTGAAGC # Left flank : GGCCGTCGACGACGCTCCCGACCGTCGCCGCCTCGTTGTACGCGGGAACGAGCGCCGTCACGTCCGCCGTGGATACCATACCGCTAACTCCCGGTAGCCGCGCTGAAAAAGGCTCGTATTCGCTCGACCGCGCTCTCCCGCCGTCGACGCCCCGCCCTCTCGCGGTCGCGTTCAGCTCTCGGCGTCGTCGCGGTCCGCACTGAGCGTCTCCCAGATCTCCGTGCAGCCAGCGCCGTCCTCGACGTCCGCGAGGTGTGCGTCGTCGCGCTCCCCAGCCCCGCCCGATTGGTTACTCATGTTCTGAGTAACTACCCAGGTGCTCTTAACCCTTGCGGGCCCACCAGCCGTCGACGAACCTCAGATACACCAAATCCACTCGCTCCCCTTCCGAAACACACCCAGCCGTCGACCCCCGGGGGGTTCAGGGACTACTGACGGTCGACGGAAACACCCAAGACAAACCCCACAGTACAAGCCCCATATGCCCCGAACCGGGCATG # Right flank : CCAATTTCGCATCTCTGTATCGCGTAGGGTCGGTGCCAGTTTCGGGGGGCGGCGGTGCGGTCTCGTTCGTTTCGCTCGGCGTGTGGGCGGAAGGTTTTATTCCACTTCGACGTGAACTGGGGTCCATGTCTACGGACGGGGCCGATGGTGGTGCGTCCCAGTCGCTGGAGGGCGAGGACGTGGAGCCGGCGGTCGTGAAGGGTGAGTATTCGTGGGAGGATTTCAAGGCGGAGTATTATTACGACGAGGAGGGTGAGCCGCCGACGGACGACGAGGGGGAGGTGGTGCCGTTCGAGCCGGCGGAGTATCTCGGGTTCGAGCCGTCGGCGCTGCCGGGGTTGTTGTCGGGCGGGGATGATGGAGCGGAGGCGTTGGATGGGGTGGTGGACGAGCGGACGCTGGATGTGGATCCGGAGATCGACGAGGACGCGTTCTTCTCGGAGGTGGACGGGCGGACGACGATTGCGAATCGGTACGATTTGGAGAAGGCGGTCGGGATG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACGCTTGAGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //