Array 1 16804-18490 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJP01000006.1 Fusobacterium necrophorum subsp. funduliforme B35 FNF_B35Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16804 30 100.0 37 .............................. TTAGTTAAAAGGTCAATAAACCTATTAACATCTCCAT 16871 30 100.0 36 .............................. TTATTCGTTTTAAAATTTCTATTTGGGTGTAAATTT 16937 30 100.0 37 .............................. TATTTAGTATCAACTTTTAAAGCTAAAATACATCTAC 17004 30 100.0 37 .............................. TGAGCTTTTATGTTATTTCTAGTTGCTCCTAATCCAT 17071 30 100.0 35 .............................. ATATGCAGGACCTGTCATTCCAACATTATAATCAT 17136 30 100.0 36 .............................. CCGTTATCGTATCTCCGTCTGCTCCTGTCACAACTT 17202 30 100.0 37 .............................. GCTTTTGGATATACTCTTTCAGAAGTTCCGGGATTAC 17269 30 100.0 36 .............................. TCTCTATGAAAATCAATCGTTCCATTTGCAATCGTG 17335 30 100.0 37 .............................. ACAAGAGCAGTAGTCCTATCACCGGAATTAACATCAT 17402 30 100.0 36 .............................. GAGAATATCCTTCGGAAGTCTTAAAATATGAAGTGA 17468 30 100.0 36 .............................. ATCGGGGCTACTGTTACAGTAAAGAGTGCAACAAAT 17534 30 100.0 36 .............................. ATTCGCTGTGCTTGCTAGCGAACTCTTTCATCACAA 17600 30 100.0 36 .............................. ACAAGACGCTTTAGCAGAACAAGAAGAAGGAAGATT 17666 30 100.0 35 .............................. AAAAAGACGGAGTTTATTTCGTTGTAGATTTTCAA 17731 30 100.0 36 .............................. CATATCGTGGTTCTTTTTCTTTTGTATAACTTTCTA 17797 30 100.0 36 .............................. TACTTTTCTTGTCAAAATCCATCACAGAAAATTTTT 17863 30 100.0 36 .............................. ATCAAGCTATGAAAGAGTTTGATATGTCTGATTTGA 17929 30 100.0 37 .............................. TTTAATGAAAAAATTACTATATTACCACTTTCTATCT 17996 30 100.0 37 .............................. AAGTTTCTGCAATTTCAATTGAGGACTTGTGGAAAGC 18063 30 100.0 36 .............................. AGTGATTTTGTAAATAAAATCACTTGCTTTTTCTTT 18129 30 100.0 36 .............................. TCAAAATTATCTAAATTTAAACTTTTTCCATTCGGA 18195 30 100.0 36 .............................. ATGATGGGAAAAAATTAGCTTTAGATCAAAGACTAA 18261 30 100.0 36 .............................. AGCTCTAAAGCATGGACTTCCGCTATTCGAATGGTT 18327 30 100.0 37 .............................. TCTTCATGTACTATGGTTGCAAAACTATGCCGTAAAG 18394 30 100.0 37 .............................. TTCTAGGAGCGATTTTTTTAAGTGTTATCTCAATCTC 18461 30 83.3 0 ..T.....A......T.T...........G | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 99.4 36 CTCATAATCGAAGCAGACTGAAATTTAAAT # Left flank : AGCGTGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTACCTTCTTAAAGGAGCGAAAATAGAGAAAAAGATAGCAATAAATTCTTATCAAGAGATAAAGGTAGTCTCTTGTGAGTATGATTTTTTGGTAGGATTAGGGAAAATAAATAAGGCAAAAGAGAAGGAATAGGATAGAAAGGAGTTTCATTTGTAATAGGATTTGTATGAACCTGGAAATGTTTTAAGTTGTTACCAAAAGAAAAACATTAAAAACATTTTTAAGGGTTAAGGATAAAAAAGTATATTGAAATGAAATAATATGAGAGTATTTTTTTTGCTTGTCGACCCTCAATAATGTAAATTTCCTAAGAGGTCGACAAACTATTTCTAGTAAGCGACTAAAGATGATTTTTGACATTTTTTGTTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTTGACAAATTTGATGGTAAAAATTATTTGAAATAAAGAACTTTATCTTATGCGG # Right flank : GATTTTTTTTGTAAGGACTGCTTCAGGGTAGTCTTTTTTTTATTTAAAATCGTGCGAGTATCTTGCGAAATTCATAATGATTCATTAAAATAACATTGAAAGTTCATGAAAAATATCTTGCATTTATCGTGTGAAAACATTCCTAAAATTTTTATAAAAAAAGTTAAAATATTTTAATTAAATGTATTTATAAATAAATAGAAATAAAGTATAATAATAGCAAGAAGGGAGGAAAAAACAAAATGTTTGAGCTAATTGGGAAGGTTCTTGTGATACTTGAAGCTCTTGAATGGATTGTAAAATTCATCAAGTGGTTAAGAAAAATCATAAGGAGACACAAAGGGGAGTAATTCTCCTCCTCCCTTCCCTTCCTGACTAGCAAAAAAGGAGGTTGATATTTCGTGGAATGGTGGAAAATTGCGGTTATTGTGCTTGCTATTAGTAAAATAGTGGATATTATCATTTGGATTGTAAAAAAGATAAAAAAATAAGAGTTTACA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAATCGAAGCAGACTGAAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 4049-667 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJP01000002.1 Fusobacterium necrophorum subsp. funduliforme B35 FNF_B35Contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4048 30 100.0 34 .............................. TAAAGTAAATAATAAATTTATTTTAATTGATTAA 3984 30 100.0 37 .............................. AAAGAATAGTTATAGATTATGGAAAGGGGTTAGGGGT 3917 30 100.0 36 .............................. AGCTAAAGTTTGTCAGACTGTCTGGGTAAAAGAATA 3851 30 100.0 36 .............................. TGCTAGAATATACGGTACTGCTAAAGTCTGTGAAAA 3785 30 100.0 35 .............................. CGGAAAAATGGGATTAAATAAAATATATGCCGGTG 3720 30 100.0 37 .............................. AAGAAAGCTGGAATAAAATAGAAGATTATTTATTGAA 3653 30 100.0 36 .............................. AGAAAAATAAATAAAATAACACTTGACAAATGAAAA 3587 30 100.0 36 .............................. GACTTGTTTGATTATGCGAAGTCTGAAGGAGCAATG 3521 30 100.0 36 .............................. AGTGTATACTCCCAAATACACACTTGATTCCCATGA 3455 30 100.0 36 .............................. ATGATATGGGAGTTTGGATTGCTAATATTAAATAAA 3389 30 100.0 36 .............................. ATTATTAGAAAGAATTGCATGAAAGAGGTGATAAAA 3323 30 100.0 35 .............................. GCAATCGGTCATGCAAGCACAGCACAAATCATGAC 3258 30 100.0 35 .............................. TCACTTTAGAGAGTGATGGAGTAAGGGATGCATCA 3193 30 100.0 35 .............................. ATTATTAGAAAGAATTGCATGAAAGAGGTGATAAA 3128 30 100.0 35 .............................. TATATAGATGCATCAAATAAATCTGATGCATCCCT 3063 30 100.0 35 .............................. GGCTACATGGTTTCAAAACCGAACAATGAGATTAT 2998 30 100.0 34 .............................. TTTTTTATATACCCTTTACTTTTACCTCCAATAA 2934 30 100.0 36 .............................. ATAATAACAATACTTTTTACACTTTCTAACCTTTAC 2868 30 100.0 35 .............................. GATATAGATGCATCAAATAAATCTGATGCATCCCT 2803 30 100.0 35 .............................. TATTTTTAATATTGTTAATTACTCAATAATAACAA 2738 30 100.0 36 .............................. GAAAAATTGAAACAATGAGGGAAGATTTCGAGAATG 2672 30 100.0 36 .............................. AGCTAAAGTTTGTCAGAATGTCTGGGTAAAAGAATA 2606 30 100.0 36 .............................. GAGACATCAAGGTAGACCTTGCCCGTTTCTTCATCA 2540 30 100.0 36 .............................. AAACTTCGGAAATAACGAGGATTTCGAGATTATCGA 2474 30 100.0 35 .............................. AGAAAAAGAAAATGAAGAAAGGTTGGTTTTTAATT 2409 30 100.0 36 .............................. AGTAAAAGTTTATATACTCTTATAGATAAAATCTCT 2343 30 100.0 35 .............................. GTAAATGGAGTCCCCTTTCAAAAACAAGAGTATAT 2278 30 100.0 34 .............................. GACTTGCTTGATTATGCGAAGTCTGAAGGAGCAA 2214 30 100.0 36 .............................. ATTAATCTATAAGTACCTTCAATTGTACAAATAGAT 2148 30 100.0 35 .............................. TCCACTAGTGTCTGAATTTTTGAAACACTGGGAAT 2083 30 100.0 34 .............................. AAAGGAAGTCCATTCTTTCCATCTACGTAAACAA 2019 30 100.0 37 .............................. CAGATAACCTCTTCATTTCTGCCAATTTTCCGTTTAA 1952 30 100.0 39 .............................. TTAATCACTTCAAGAATTTGTACATTCTTGAAGAATACG 1883 30 100.0 35 .............................. CGGTTAAGAAATATAAAAAATCTATGTTTGGGCGT 1818 30 100.0 36 .............................. ATATCAAAGCCTCTTACGAATACAGCTGAACTTAAT 1752 30 100.0 36 .............................. TTTTTATTGTAAAGTTTATATCTGCTTGGCTCATAC 1686 30 100.0 36 .............................. TTTTATGAAGCTTAGAACGAACATCTCTATCTAACT 1620 30 100.0 34 .............................. TAATTATTAAATTCTCTACCAACATTCAAATTGT 1556 30 100.0 37 .............................. TTGGTGGCTGAGATTGATTGTTGTTTTGATTATTTAA 1489 30 100.0 37 .............................. TCTGCAACTTCAATGATAACCTCGTCATTTTCTTCTG 1422 30 100.0 37 .............................. AGATAAGGAAGAATGGAGATTGGCTGACAACACGTAC 1355 30 100.0 36 .............................. TAACTAAAGAAATTACGGAGCAGGAATACAACTTGC 1289 30 100.0 35 .............................. AATCTTTCCGGGTAAGTTCGTTGCCTTCTTTAAAA 1224 30 100.0 36 .............................. TCAAAGGAGGAAGTTATGAACACATTAAGCATAGAT 1158 30 100.0 35 .............................. TTTGTTTTTTATGTTCTTTGATAAGCTGTTTCATC 1093 30 100.0 36 .............................. ATTCTTCCCATTCAAATTTCTCATTCTTGGAAAAAT 1027 30 100.0 36 .............................. CAGACAGGGACAAAAAGAGAAAGTCATTATCCATCA 961 30 100.0 35 .............................. TAAATAGCGTGGTCATATCTGTTTCTTGCGAATCT 896 30 100.0 38 .............................. TTGCTTCCTCGTGAAACGAACCGAGCTGCCCCGTCAAA 828 30 100.0 36 .............................. TCGTTTGTCAGACTTCCAAAGATGGCTGTGATAATC 762 30 100.0 36 .............................. TTGCAAATACATAAAAATAATGGAGAGTGATATAAA 696 29 83.3 0 .....T.TA...........A...-..... | T [669] ========== ====== ====== ====== ============================== ======================================= ================== 52 30 99.7 36 ATTAACAAGAAACATAGGATGTTTTGAAAT # Left flank : AAAGAATTTACACCTTTCTCACTAAAAGATTTATATTAATGAAAGGATATTTATGAGACACTTAAATTATAACTATGCTTGGGTATTTTACGATGTTGGGGAAAAAAGAGTAAATAAGGTTTTTAAAATTTGTAAAAAATATTTATCTCATTTTCAGAAATCTGTTTTTAGAGGGGAAATTACACCTTCAAATTTAATCAATTTAAAAATGGATTTAAAAGGAATAATTGTGAAGGAAGAAGATTTTATTTGTATTATTAAATTATTAAATGGTAGTGTATTTGGAGAAGAAATTTTAGGTACTTCTTCTTCGGAAGAGAACATATTTTTATAAATTTTACCAGGTAAAGATTTAAAAATATTACTAATTATTAGGTATATTCACTCTTCAAGAATAAATTATATTTTTTTAACTTTAACTTGGTAAAAAATGACTAAATTGCTGAAAAAATTGAAAAAATTAGATCCAAGATAATATGAAAATTATGCAAAAATGGAGA # Right flank : CAATGGACCCTTGTTTTTAGGTAAAGTATATTAAACATAAACTGTGTTGAAATTTTTTCAGAGATATAATATATCAGGAGGCTATTTTTATAGAAAAAAGAGAAAAGAGATGTACAAAGTGAAACCTTCAATACAAGGAAAAAATAGTATTGCTTTTTTACTATGAGGATAGGATATTCAAAAAATGAAATAAAAAGGTTGTATAATAAATGGTGTTGATGAGAAATGTTTCCTCAATACCATTTTTTTTTACAAAAAAAAGTGGAGACAATGAAATTTTCCTATTAAAATGTAATCGCGAAACCCAATTTAAAAGGAGTGATTTCATTGTCTCATTCAGATTTTATCAAAGTTCTTTTCGATTTACAAGACCCTAATTTATATTTTTTAGAGGATGACATTCAAAGAGTTCAAAAAAAACAAATCTACTCTAAAGTATTACATGCTACTTTAACCAAAGATACCTGCGCTTGTCCTCATTGTCATTCTCAAACAACTGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAACAAGAAACATAGGATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 20526-15935 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJP01000002.1 Fusobacterium necrophorum subsp. funduliforme B35 FNF_B35Contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 20525 36 100.0 30 .................................... TTAACCTATTGGCAAAAAGTAGACAGCCCA 20459 36 100.0 30 .................................... TAATACGAGGGATTTAGCCGATGATAGTTT 20393 36 100.0 30 .................................... ACAGTATCGATATTTTGTAACGTTGAACCT 20327 36 100.0 30 .................................... CTTCCATTATCTTCAACTCATCAGCAACGG 20261 36 100.0 30 .................................... AACAACAAGCAAAAAAAAATACAGCACTAG 20195 36 100.0 30 .................................... CGGAATAAGATATTCAGAATGTTCTTCTTG 20129 36 100.0 30 .................................... ATTTGAGGCATGAACCGTTTCAAAAGTTTA 20063 36 100.0 30 .................................... GAACTTAACATGAATCCTACGGATGTTATT 19997 36 100.0 30 .................................... TACTCCACTTCTCATCTTTCCTGTAATCTT 19931 36 100.0 30 .................................... GTTGAAAAAATACAAGCTACAGAAGAAGTG 19865 36 100.0 30 .................................... GTAGAAAAAATTAACTTGTATATCCTATGG 19799 36 100.0 30 .................................... GTCCAACATTAGCTCGGATTGATGACATAG 19733 36 100.0 30 .................................... ATCACCAGGATTTACTTCTTCCCAATAAAT 19667 36 100.0 30 .................................... TCATTTTAAATTATACTTAACCAAGTTTAA 19601 36 100.0 30 .................................... GAAAGGAGAATGAAATAAGCTCTTAGTGTT 19535 36 100.0 30 .................................... AAGAGCAATAATCATTGTTCCCTAGCACTA 19469 36 100.0 30 .................................... AACAATTTGGAACAAAAGCTACAGAAACAT 19403 36 100.0 30 .................................... AATGTCTGCAAGACATTATGAAGGTCATGA 19337 36 100.0 30 .................................... TTGTGGAATTGGGAGAGCTTGCAGGAATGC 19271 36 100.0 30 .................................... TGGAACCCAAAAACTCTGCACGTTGTTGTC 19205 36 100.0 30 .................................... ACAGTATCAATATTTTGCAATGTGGAGCCT 19139 36 100.0 30 .................................... TTCCACCTCCTACAACTGACTGTGGTACTG 19073 36 100.0 30 .................................... ATAAAAATACTCTATTAAGAAAGACCGCAA 19007 36 100.0 30 .................................... ACAAGCTCTGAGGGATTAGGAATTGCTTAT 18941 36 100.0 31 .................................... AGCTTGGCTTTTTTAATAGTCTATTTTTTAA 18874 36 100.0 30 .................................... TGGGAGCCGGAAGTATTATGAGAGAACGAG 18808 36 100.0 30 .................................... AGAAAAAATGAAGAAAGAGTGGCAATGTTT 18742 36 100.0 30 .................................... CTTTATTTTGAGAGATAATAGCATTCAGAA 18676 36 100.0 30 .................................... AATGAAAGCAGATTTAAAAGAAGATATGCG 18610 36 100.0 30 .................................... TGTCATATTCTTTTGTTACATATTGACCAA 18544 36 100.0 29 .................................... ACGAGCAAAGCAAGGTTTTATCCAGTCGA 18479 36 100.0 30 .................................... TAAAGATGGTATTGTTGGAATGTCAGTGCG 18413 36 100.0 30 .................................... TAAAGATGGTATTGTTGGAATGTCAGTGCG 18347 36 100.0 30 .................................... TAATGCTGTAAATTCCTAGTGTAAATGCGA 18281 36 100.0 30 .................................... ATTGAGAATTATTAGGCTTGAATTTGAAGA 18215 36 100.0 30 .................................... TTTTATGAAAATAATCTTAATATGCTGGAT 18149 36 100.0 30 .................................... CTCATATTTATCATGATACGAAGTATGTTC 18083 36 100.0 30 .................................... AACGATATATCTGCTTCGTACATCCATCCA 18017 36 100.0 30 .................................... ATGAACTACAAGGGATTTATTTACAATTTG 17951 36 100.0 30 .................................... ACATAAGGTTTATCTGTTCGTATGATTTGG 17885 36 100.0 30 .................................... GTAAGAGAAACAAATAAATACTTTGGATGA 17819 36 100.0 30 .................................... CTGCAACTGAAAGGCAATAAACCAGTCGTT 17753 36 100.0 30 .................................... TTAATATTGGGACGAGAGATGGGACTAATG 17687 36 100.0 30 .................................... GATTTAGCAGACGACAGTTTGAGGATTTCT 17621 36 100.0 30 .................................... TCTTTCAATAGCTTCGATAAAGAAAGCTAC 17555 36 100.0 30 .................................... TAGAAACGGAAAATGGAACTTTATCATTGA 17489 36 100.0 30 .................................... GGTTTTCCTGTGAGTTGTTCTTCTATCTTA 17423 36 100.0 30 .................................... CCCACACGGAACGTTCAAAGGGGTAATTCC 17357 36 100.0 30 .................................... TTTGTTTCCAAGATTCTATTTCACACATGA 17291 36 100.0 30 .................................... TCTGTACTTTCTCCTAAAAGTTCTTTCTTT 17225 36 100.0 30 .................................... TTAAATCTTAAACGAAAAGAGTTGGAAGTG 17159 36 100.0 30 .................................... AGCATGCAATTGCAAAATATGCTTTTGTCT 17093 36 100.0 30 .................................... CGGCACAAGTTATTAAAGTATGTCAGAATT 17027 36 100.0 30 .................................... ACCAACACTTTGTAAATCTTGCATACGCCT 16961 36 100.0 29 .................................... TTTAAAAAGAAAATCATAGAGTTCATGTA 16896 36 100.0 30 .................................... CACTATGAATGGCAATGCTCTTCCCAACCT 16830 36 100.0 31 .................................... TCATATAGATAATAAATCTGTATCCATTTAT 16763 36 100.0 30 .................................... ATTGGAGAGGATGAATGATGGCAAAGCTAT 16697 36 100.0 30 .................................... TCCTAACGTAAAAGCTACAAAACTCACAGT 16631 36 100.0 30 .................................... TGATGAGAATGAAATATGTTTTTAGCAAAG 16565 36 100.0 30 .................................... AGAAATTATTACAAACAACTCTACTTTTCA 16499 36 100.0 30 .................................... GAAGAAATATATATTCAAAATAGAAGATGT 16433 36 100.0 30 .................................... AAAGATTTCGCATCATCCACAGTAGGTTGT 16367 36 100.0 30 .................................... TGTGACCATAGAAGCAAATACCGGACAATT 16301 36 100.0 30 .................................... TCTACACCGGCTGGCTCTATGGCTTCTCAG 16235 36 100.0 30 .................................... GAAATTTTGGAAAGATCAGCATAAGCTTCT 16169 36 100.0 30 .................................... CTTTTAACATGGAAATTAACTTCGGTACGA 16103 36 100.0 31 .................................... TTATAAATTGTTTCTCTCCACCTGATTTGAT 16036 36 100.0 30 .................................... AGTTAAAAAGAACAGCTCCATGGGAAGCGA 15970 36 97.2 0 ............................G....... | ========== ====== ====== ====== ==================================== =============================== ================== 70 36 100.0 30 GTTTGAGAGTAATGTAACTTAAGATAGATCTGAAAC # Left flank : TTTTTCATCAGCTAAAGGAATATACTCTAAAAGATGAAATATATGCAGAAAAATTGGAAATGGAAGGAAGTTTGAGAAGCTTTTTATATAAAATAATAGATAATTTTTCTTATCCTTTGGAGATAGCCGAAAATATTGAATATGAGGACCTGTTTAAATTATTTCATATTCATATCAGTGAAAATTATGATAGTTATTTGGAAAAAATGATAGACTATTTGACATTATCATATGAGTTAGGTTTGATGAAATGTGTCATTTTTGTGAATTTAAAAACAATTTTTGGAGAAGAAGAATGTCGCAAATTATATCAACAGTGTTTTTATAAAAAAATTCCGATAATTCTCTTTGAAAATAGAGAATATGAATATACAATAAAAGAAGAAGAAAAAATTATTGTTGATTTCGATTTATGCGAAATTCGACTTTAATTCTAAAGTTACAACTACTTATCGTAAGAGTAGGTTATTCTTCTCAAAGTACGAATTTTCGTTTTTGAG # Right flank : AGTTAGGGCAAGCGAAAAAAGAAAAGACAAAAAGACATTTAAAATATATGTAACTGAATTAGACCGTGAAATTGAGTATAATCCTATTTTGCGGAAAGAATATCTGGATATATCCGGTACAAAAGATGAAGAATTATGAAATTATATACAATCGCTGCTTGATTTTTAGAAAGGATGATTTAATAAGAAAATTAAAGTGTGAATTGAATCCGGTTGAAGTTGTAGATAAAGTTTTATCCGCATCTTCAATTTATGCTCTGACAAAATTAATTTTACAGCAATCTGAAATCGAAAATGGGGCTATATCGAAGTATGTAAAGTTGATGGAAAATGATATAAAAAACTAACCAAAAATGATTGGAAAATATCTACGATTGCCCACTATCTACAAAAAGGGTATAGTCTGAGAGAACTTCAATCATTGAGTTTCATAGAATTGTATTTTTTATATCAAAGTATTGACTTTTTTAATCATACTGGAGTATAACGAAAGGGGATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTAACTTAAGATAGATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 90509-91937 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJP01000010.1 Fusobacterium necrophorum subsp. funduliforme B35 FNF_B35Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 90509 37 100.0 36 ..................................... ATGCAAGAATTTCCTTATACTTTCGCACTTTCGCAA 90582 37 100.0 36 ..................................... TCATACTGATTTGGAACAGTATTACATCTCTTAGAT 90655 37 100.0 37 ..................................... ACCTCTTATCTTCCTCGTCTTCACTTTCCCGTAATTT 90729 37 100.0 38 ..................................... TCACTGATATATTTACCATTGCATAGTGGAGCAGGATT 90804 37 100.0 36 ..................................... AGAACTACAAACAACAATATTAATATCATTCTCATA 90877 37 100.0 37 ..................................... TTTTTATTATTTAAAACTATCATTACTTCCTCCTTAT 90951 37 100.0 38 ..................................... TCTTATTGTTGGTAATACTTCCTCAAATACCCATTTTT 91026 37 100.0 34 ..................................... AATAGTGATATTTTTCTTGTATTTAACATAATTG 91097 37 100.0 36 ..................................... TTTGTATGGAATTTTGCGTCAAATTCTGTTCCACCA 91170 37 100.0 36 ..................................... ATACTTTATCCTCATGTTATCCATGATTGGAGCAAC 91243 37 100.0 36 ..................................... GATGAAATCTCTAAAATTTTTTTAAATTTCTTGTTT 91316 37 100.0 36 ..................................... CTTCTCATTTTTCCTGTTATTTTCGAAACCCCTTGT 91389 37 100.0 36 ..................................... AAAAGGTACTGGAAGCAAATCTATCACGTTGCGTGA 91462 37 100.0 37 ..................................... GTTACCATAAATTGCCGCGTTCCCGTGAATTTTGGAA 91536 37 100.0 37 ..................................... TATGGTATTCCGGGACTGTGATGACACGAAAACTCGT 91610 37 100.0 36 ..................................... AAAAGGTACTGGAAGCAAATCTATCACGTTGCGTGA 91683 37 100.0 36 ..................................... TCCAGCTCATAAATGTTTATAATGTCCAAATAGCCT 91756 37 97.3 37 .................G................... AATATTCTACAAATAGTTTATCTTCTCTTGTAAATAC 91830 37 94.6 34 ........A........G................... TCTTATCTGCTCTTGCATAAGAACTTGCTTAATA 91901 37 91.9 0 .................G..............A...T | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 99.2 36 ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Left flank : AGAAAGAAGAAATAAAATACGAATTCGAGTAAAAATATGCATTGTCTCAAATAAAGTTTTTATAACATTAATGCTATTATCTGAAAATTTTAACGTAAGAAAGGATTCTTCCAATTGATTGATTTTCTTTAGAAGATGATATTTCGTATTGATTTTAGAAAACATTCTGTATTTAGTATACACGGTATCAAGCTCTACTAAGATTTTTTCCATATTTTTTCTCCTATTCTTGACGATTATATATTTATACTATACAATAGAAGTGGAAGAAAATAAAATATTTTTTTACGAAAGTATTTAATGTTTTATTTTATGCAATATAAAATCTTATTTGAAGGGAGGTTATGATTACGAAAGGGAAAATAGTCATATCAAAATATAAGTACTTTTTGAATAAAAATGTAGAAAAGTATCAATTTATTGTACACTTTTTTAAAAAACTTACGAAACAAAATAGTCAAAAAAGGATTGGAAATTATGAAAAAGAAGCACAGATTGCT # Right flank : TGCTACAGAGTTATACTAAAAAATTTAGAAATAGAAAAACATAATTGGCAACTTTTGGATAAAGACCATATTACTACCATCTCTTATTTTCAAAATGAAGGAGTTGCAAGAAATGAGAAAGGAAATTATGTTGAAGAAAAATAAATATGAAATACTAAAATGAAAAATATAATAAGCCAGAAATAGATGAGGTAACTCCATATTTGAGAAAATTAAAGGATAATATTACTGTAAAAACAGAGAAAAACAATCAGATATCAAAAGGAAGCTTTTAAAGAGATAAAGGTATGTAGAGTTTATGAGCAGGTAAACTTCGTGGATTGCTATTAAGAAAAAGTTAGGAGCAATTTTTATTAATGCATACCAAGCAAAAAATTGATTTAGAAGCATTATACAGCTGGAAAGAAGATTTTGAAATGATGACAAAACAAATGCCTAAAAATAAATGGGATACGATAAACAATGTTTTTCCTACTGATTTATTTGGTAAAAAGTTAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //