Array 1 40723-39350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCHG010000057.1 Escherichia coli strain GCPRC5 Contig_57_94.833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40722 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 40661 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 40599 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 40538 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 40477 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 40416 29 96.6 32 .................A........... GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 40355 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 40294 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 40232 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 40171 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 40110 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 40049 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 39988 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 39927 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 39866 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 39805 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 39744 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 39683 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 39622 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 39561 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 39500 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 39439 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 39378 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57289-56223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCHG010000057.1 Escherichia coli strain GCPRC5 Contig_57_94.833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57288 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 57227 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 57166 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 57105 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 57044 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 56983 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 56922 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56861 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56800 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56739 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56678 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56617 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56556 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56495 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56434 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56373 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56312 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGTACAAAA 56251 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //