Array 1 58460-58251 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWVI01000042.1 Halomonas lionensis strain RHS90 Halomonas_lionensis_RHS90_contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58459 29 96.6 31 A............................ AGCAGCACGCTTGCCCCGCGAAACTCGCGCG 58399 29 100.0 31 ............................. GAAAAGTGTATCTCGTTCATGCTGAGCTGGT 58339 29 100.0 32 ............................. TCAGGATTGAGCTTGGTGAGCGTGGCGCTTCC 58278 28 86.2 0 ..-......................T.TT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GGTGAACCGCCGAATAGGCAGCTGAAAAA # Left flank : AATATGGCGAACGAAGGATTTATTGAGGTTAGTGATATCAAAATGGTTCCAGCCATATCAGAAGAAGTGAGATTTATTAGAAACCAGCATGTTGCTAAATCTTTCCCAGGTGAAATTAAGAGAAGACTGGTCCGCAGCAAAAAGCGGGCGGAAAAACGCGGCGAGACGTTCATGCCTAGCAGTTCCGTATCAGATCGCTTCGTTGATCACTGCCACGTAATTCCTATTGATAGCCGATCGTCAGGCCAACGATTCCCGCTGTATGTGCAGTATGAGGCGCTTGGTCAAGAAAGCCCGTGCGATAGCTACAATAGCTACGGATTGGCTACAAAACAGATACACTCTGGCTCTGTGCCAAATCTTAAGCAGATTACCTAAATATTTTCAGAATATATATTGTTATATTTTTCAATGGCTTAATTAAGATACGCCAAAAAGGGTATTTTTAGTATTTTGTACTTATCTTGTTGATGCCTATATTCATACTTCTAGCTAGGTTT # Right flank : AGGACTGGAAGACAGCAACGGTAATGATACACACCGCCGCAAGGCAGCAATAGTTCTAAACCCTCCAAGATTTCTTGGAGGCGGGGGCCGGTCTCACGGATTCAGGAGTATGGCTCAAGCTAGCAATCAATCGCGCGAGGAACGAGCGTCGGCTGTATGGCCTTATTGGGCTTTGGCAACCTCCTGCAATGACCCAATCACGAACTCTCGGAAATACTCTCCCTGCTCAGCAGCAAGAGCAGGAATACATTGCAACTTAAATTCCGGCCACGGCCTGCAGCCCTGCGACAATTTCTCTGTAAGAGCGTACTCAAGGACCCACGCGGAAAATGGAACATCCTTATCTTGGATTTTTTTCAGAAAAGTCTTTGCTTGTGAAAGACCACCACCTGCCCCCTCAAAGGCAACTCGGCCTTTCGAAAATACATACCACTCACCCGTCTTCGCATCTTCTGCTATTATTACTGGCAATCGCCAAGCCATCGACGGCCGGTCCTCAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAACCGCCGAATAGGCAGCTGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 1-1685 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWVI01000097.1 Halomonas lionensis strain RHS90 Halomonas_lionensis_RHS90_contig_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 1 26 86.2 32 ---.....C.................... TTGGGGTTGAGGATCTCCAGGGCGGCAGTGGC 59 29 93.1 3 ........C...................A GCT Deletion [91] 91 29 96.6 32 ........C.................... CATTAGAGCCAAACGCCACCGGCACCGATTGA 152 29 96.6 31 ..............G.............. CACGCGGCGTTAAAGCGCACCGCCGGTCTGG 212 29 100.0 32 ............................. ATTCGGCTTGAGATTAAAGAGTGGTTCGACGA 273 29 100.0 32 ............................. GTTCGGCTTGAGATTAAAGAGTGGTTCGACGA 334 29 75.9 13 ............A...AAAT.T......C GCGTTGGTATCAG A [346] Deletion [376] 377 29 93.1 33 ...................T....G.... GTCAGCCGCTCGCTGATTCTGTAAGCCCGGTTA 439 29 100.0 27 ............................. CGCTGCGTGTTTTACAGCTATGAATCC 495 29 100.0 32 ............................. CTTCGGCTTGAGATTAAAGAGTGGTTCGACGA 556 29 100.0 32 ............................. GTTCGGCTTGAGATTAAAGAGTGGTTCGACGA 617 29 100.0 74 ............................. ATTCGGCTTGAGATTAAAGAGTGGTTCGACGACCGATCCCTGCGCGCTGTTGGCAACGGCTGGGCACTTAAGCG 720 29 100.0 25 ............................. GGCCGATTGAAATAACGCAGGCCAA 774 29 93.1 3 ........C...................A GCT Deletion [806] 806 29 96.6 32 ........C.................... AAGTCGGGCACTTGGGCGGCATCGTTCGCAGG 867 29 96.6 33 ........A.................... CCCGTCCATACTCGTCAGCTCACCGTTCCTTAC 929 29 93.1 26 ........C...................A TTTTTCTTAACATTGCGGACGGTAGC 984 29 89.7 3 .G......C...................A GCT Deletion [1016] 1016 29 96.6 32 ........C.................... CATGGGTGCTACTGTTTCGCAGTAAGGCGTAT 1077 29 89.7 26 ........C..................GC ATACAAGAAATTTGATTTTAAAAGCT 1132 29 86.2 24 ........C.................ATC ATCGTTTTTGCTAAAGCGCCGCAT Deletion [1185] 1185 29 89.7 30 ...G....C...................C CCGCCCCATTTCGTCAGTAGGCAACACTAT 1244 29 89.7 26 ........C..................GC GGCAGGCCGACGAGTACGCAGCAGCG 1299 29 96.6 62 ........C.................... GATGGGACGACAAGCGCGGCTGCTGGAAAGACCAGTTTGCGGCGATAGTGGCCCCGGATGGC 1390 29 93.1 3 ........C...................A GCT Deletion [1422] 1422 29 96.6 33 ........C.................... ACATATGATCTTTATGGTTCTACTATAACGGGG 1484 29 93.1 32 ........C............G....... ACGCTTTACCACGTCAGCGATATTGCCGGTAT 1545 29 82.8 83 ...C....C..A.GA.............. TCGAGTACTCATTGAGGTTGGTGTGTTCCCTACATTAGTGGGGATGAACCGTTTTCGCGGTACATGCGGGCTTCTGCTTTTGT 1657 29 69.0 0 ...T....C....TA.......A..TATT | ========== ====== ====== ====== ============================= =================================================================================== ================== 29 29 92.9 30 CCGATCCCTGCGCCTGCGGGGATGAACCG # Left flank : | # Right flank : TTAATTGGTGCGGATGGGGAGACTCGATCTCCCACACTCTAACGAATAGATATTGATGAGCTGTAAAAATAAAGGCTGTCATGCTAGTTGCTTGGTTGAGGCATCGCTGTACGGTGCGTGGGCCGCGCATCAGAAATTCCGCAACTACTCCTTCTCCTCATCCTCTTCCCAGCGTTCAATGGCGCGTTTGTCGTCGGGGAGTCGCACCATATCGGCCAACGTTGAGATTTTGGTGTGACTGAAAACGGTGGCCGCGTTGGTCGAGAATGGCGGCCACGCTGCCAATGCTCACGGCATCTTCTTCGCGGTAGGCTTCTACTTTGACCCGCACGATGCGGCCTTGGTAACGGGCGGAAAGCACGGCACCTGGGTAGGGGGGCGTGTGTTCGGGGTCGTCCTTGAAGAAGGCTGCTACGCTGGCGCTGCCGGGCTCGTCCCATTCAATGTGCTTGTGCATGGTGAGTGTCCTTACTGTGGGTGAATAAAAATAAGAAGGCTCG # Questionable array : NO Score: 4.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.75, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCTGCGCCTGCGGGGATGAACCG # Alternate repeat : CCGATCCCTGCGCCTGCGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16117-15860 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWVI01000097.1 Halomonas lionensis strain RHS90 Halomonas_lionensis_RHS90_contig_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================ ================== 16116 29 86.2 64 A.A.CA....................... CTGCTCGTATCTAGGTTTAAAGCCATTGCGCCACACATCGATAACTAACCACCCCATAGTAGCC 16023 29 100.0 1 ............................. A 15993 29 89.7 33 GT.......................C... CGGGTGGCTCGGTGGTCTTCGTCTGGATCCCAC 15931 29 96.6 14 .G........................... TCGATCAGTGACGA 15888 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================ ================== 5 29 94.5 28 CCGATCCCCGCGCCTGCGGGGATGAACCG # Left flank : GCTTGCCGCTGGTGATATTCAGCCGCCACCGCCAGCACCCGACGCAGTGCCGCCTGCGATACCAGAACCACCTTCGGTCGGCGATGCAGGGCATAGGAGCGGATAAATGGCGATGCTCGTAGTGGTTACAGAAGCCGTGCCCCCACGCCTACGTGGCAGGTTAGCAGTGTGGCTTTTAGAGATCAGAGCTGGTGTTTACGTGGGTGTTGTTAGCAGGCGCATTCGCGAAATGATTTGGGAACAGGTCGAAGCGCTAGCTGAAGATGGCAACGTCGCCATGGCCTGGGCCAGCAACCATGAATCAGGGTTTGAGTTCCAAACTTACGGTGAAAACCGCCGAGAACCCATCGACCATGATGGTTTGCGTCTGGTGCGCTTTTTACCACCACAAGTTAACTAGCTGATTTTATTTGATCTTTAATAATTTAGCCTGATTAAAAGTAAGCAAAATAGCTGGTGGATTTTTTATCTGCTATTTTCTTCTTGTAGATCAATTATCT # Right flank : TTCTACCTGGCGTTATTGGTGCTGACGACTCGTGGACTGGCCAAAAACACTCAGCGCCTCACTTACTGCATGATGGCTGTCTGTCATCGCTTGTTCACTTGCCTGTCTTGGCAGTGTCATTGTGCCCGCGCAACATAATGAGAAACGTGATAAAGGGATGAATCGCTCATGCGGCTCTGTATCGTTAGCGAAACATGGTCTCCAGAAATTAACGGCGTTGCGCATACTCTCAACCGGATATGTCGTGAGCTGCAGCGGCTGGGCGTCACAATGGATGTGATTCGCCCTAAGCCTAAGGCACCCGGCAGTGCCGCCTATGCCACCCAAGAACTACAGGTTAACCACCTGGCGCTGCCCGGCTATCGTGATGTTCAGGTGGGATTTGCTCGCCCGTCCACGTTGCAGCGGTTTTGGCAACAGCACCGGCCAGATGTGATTTATTTAGCCACCCAAGGCCCGCTCGGCTGGGCAGCTCGCCAGGCAGCGCAACAGTTGAGCAT # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-1.90, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //