Array 1 115521-116881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTX01000002.1 Helicobacter pullorum strain 2013BJHL Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 115521 36 100.0 30 .................................... CAACGAATAAAGTTTTTCAAGCCAATTCTG 115587 36 100.0 30 .................................... CAGGAAGTTTTAACACAAGAACTTTTTGCA 115653 36 100.0 30 .................................... AAGAGGAAGAATTTTTAGCTGGACTTAGAG 115719 36 100.0 30 .................................... TTTTTCATTACAAATCCTTTCTTTGAATTA 115785 36 100.0 30 .................................... ACAATTGGACGAACGATTCATATCAATTCT 115851 36 100.0 31 .................................... AATAAACCTCCTATTTTGAAATAATCATACG 115918 36 100.0 30 .................................... TTATACTCAAGGCATTGAGCGTGAATTTTT 115984 36 100.0 30 .................................... AATCTTTGATAACGCTCCAAATTTGAATGA 116050 36 100.0 30 .................................... GTAAAACTTCCTGACTTATCTACTACATTA 116116 36 100.0 30 .................................... CAAGAAGTTTTAACGCAAGAGCTTTTTGCA 116182 36 100.0 30 .................................... GTAACTCCCCCTTCTTTTACTGTTATAACG 116248 36 100.0 30 .................................... CTTGTCTTATATCCGCTCGCTGACACAAAA 116314 36 100.0 29 .................................... TCGGATAGATACCAGGAATATCGCTATCA 116379 36 100.0 30 .................................... AGTGACCGATATCAGGAATATCGCTATCAT 116445 36 100.0 30 .................................... AGATTCCGCATTGGTTTAAAAAACTTTATT 116511 36 100.0 30 .................................... TGGACATCAACAATTCCCATTTTCCAGGAA 116577 36 100.0 30 .................................... CATAAACGCTATCTTGGTCGCTTTCTCAAA 116643 36 100.0 30 .................................... ATTTCTAGAGATGATTATGAGAAAATGTTA 116709 36 97.2 30 ..................C................. GAAGAATTAGATGATGCTAAAAAGTTATTT 116775 36 100.0 30 .................................... TTCTAGTGTTGAAAATATTGATGATGAAAC 116841 36 91.7 0 .........................CC....C.... | AG,AG,T [116864,116872,116875] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.5 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGGGGGAGTATCCGCTGTCTTATTATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTGCTTTTTGGGTTTGATGAGAAAAAGGGAGAGTATGTGTATGTGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGTGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTATTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : CCATTACTTTATTGTTTTTGATATAATTTAGGTTTTTTAAAATATTTTAAATGATGTAGTTTTTGATTACTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTGCGATAAGCTAATGTGTGGTGAAAAATTAAGAGTTTTAGATTGTCTTATCTTTTGGGGTTTTTCGTAATTTAGACTAAAAAATCAAGGATAACACACTACAAGATTCAAACAAATATTTTAAGAATTGAAGGGAAAATCATGGTATATACTACTTTTTACCAAAGTCCTATTGGCACGATACTTTTAGCAAGTAAAGATAATAAGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAGGGAATCTACACAAGAAAAAGACGATGAACCTATCTTATTGCAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTAGACTTGGCACCTAATGGAAGTGTGTTTGCTACAAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 83709-85838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTX01000005.1 Helicobacter pullorum strain 2013BJHL Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 83709 36 100.0 36 .................................... ACATTACAGGTAACGCTGTAGTAAATATGGGTATAT 83781 36 100.0 37 .................................... AGTATAAGCTACTGTTTTACCGACACTAGACTCATTA 83854 36 100.0 38 .................................... AACATCATTTGGATTGATTTCTACTGTATAATCTGTAG 83928 36 100.0 39 .................................... TATATAATAATACAGATAATGATCCCATCCCTACTACTA 84003 36 100.0 37 .................................... GTATATACTCTCTCACCTCTAACTTGAACCTACTTAT 84076 36 100.0 35 .................................... TGTATCGTATTTCTCAATAATTATTGTGTTCAATT 84147 36 100.0 37 .................................... CTAAGCCCTCTAAATTTATTATTTTGCAATATTTCCT 84220 36 100.0 37 .................................... TTGGAGTGCAACATTGTAGAAATTACAGAAAAAGAGA 84293 36 100.0 35 .................................... AGCTTTGATTCTATTTTTGGTAACTCATCTTTTAA 84364 36 100.0 34 .................................... TTTTTACTGGTAAAGAATAACGCTGACCAAAACC 84434 36 100.0 37 .................................... ATCAAGATAACCCCTTTCCATTAGTTTGACTGTCACA 84507 36 100.0 36 .................................... TCAATGAAGTTAAGCGACGCATTGAAGATCAGCTTG 84579 36 100.0 35 .................................... CGCGCAACTTGTAATGATTGCCATTTGCCACATAG 84650 36 100.0 40 .................................... CATATCTTTAAAGTCATTCTTAAGCCCTGCTATTCCTATA 84726 36 100.0 35 .................................... ACTTTACCACAGTATTGTCTGAGGAATGTGGTATC 84797 36 100.0 35 .................................... ATTCTTTAGTAGGATCTAAATCTTTCAACTGGTAA 84868 36 100.0 37 .................................... TTAAACCCGTCATTGTTTAGCTGTTTTCTCATTTCTA 84941 36 100.0 36 .................................... AGAAAAGGGCTTGTTTCTACAATTTCGCCATATAAC 85013 36 100.0 33 .................................... CATTTAATGCAAGAAATAACTTATCATAGCACC 85082 36 94.4 37 .....................TG............. ATTCATAAGCAAAATAGTTTACTAGTTCTTTAGGTAA 85155 36 100.0 39 .................................... TGATTCCTTAATGTATTTATCTATCTTTTCCATATATAG 85230 36 100.0 36 .................................... TGCATACATCCAATCATTTACTTGAATGTGTTCTTC 85302 36 100.0 34 .................................... TCTTTTCATCTTTAAAGTTTCTTCTCATATCTTA 85372 36 100.0 35 .................................... TTAAACAGATTTCAGGCTTGTCTAATCCGTTTATA 85443 36 100.0 35 .................................... GGTATTTAGTTTACTGAGTATCGCACTAATGTTTG 85514 36 100.0 34 .................................... ACCATAATTAGCATAAGGATTGATAGGCATTAAC 85584 36 97.2 38 ......................G............. TCCACAGAGACTAATCTCTGTAGTATTTTGGTCTTGCA 85658 36 100.0 38 .................................... TTTTATTAAAGGCATAACAGTCCTTTCTGTATATAAAC 85732 36 100.0 34 .................................... AAATTTGCTTCTCCAAAAGGAGGAACATACTATG 85802 36 72.2 0 ............A...TAT.....AA..T....TTT | C [85832] ========== ====== ====== ====== ==================================== ======================================== ================== 30 36 98.8 36 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCAATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCGCATAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTACCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : TTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGCAAAATGTATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTTCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAACCTAGAAAATCTTGATAAATCTCTTTTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //