Array 1 977996-978328 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKNR01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 977996 28 100.0 33 ............................ CGACATCAAAAATTGAAATGGCGTTGTCATTAT 978057 28 100.0 33 ............................ AGTTAAAGCGCCACCAGCTAAGCCTGTGCCGGT 978118 28 100.0 33 ............................ TAGCGTGATCAATAGCATTGTCCAGGTGGGCGT 978179 28 96.4 33 ............C............... TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 978240 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 978301 28 85.7 0 .C....T............A.......T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCGGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTTGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGACATCTAAATCATTCGAGTTTATTACTCGTCTGGATATATTATTCTTCATATTAATTATCTATGGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGGTATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 987082-988513 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKNR01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 987082 28 100.0 33 ............................ CGGTACAAAACGCTCCATGCCGATATCGCGCTC 987143 28 100.0 33 ............................ TATCAACGATGCGGTAAGTTACGCCGTCAATTT 987204 28 100.0 33 ............................ CCCAGTGGCAACCAGATCACCTGCCCCGTTATG 987265 28 100.0 33 ............................ TAAGCCAATCTGACAAATTTCATACTAGCCGTT 987326 28 100.0 33 ............................ TAAACCCCACCAGGGCGAGCCACGATTAACTGG 987387 28 100.0 33 ............................ CCAAGCAGGCTGGCGCCCGTATGCGCTCAGGCG 987448 28 100.0 33 ............................ TATCCACTGCAGCGTCCATGTCGCCTTAAGGTC 987509 28 100.0 33 ............................ TTGAGGGTTTCAGGTTTGATATCTTCGGCAGCG 987570 28 100.0 33 ............................ CTATGTGCCGTCGGGCCTGACGGTATCCGCGCC 987631 28 100.0 33 ............................ TTACAGGGACTGCGGCAGCGGTTTGAAGGTTGA 987692 28 100.0 33 ............................ CACCCGGACAGCATGGCGGTCAGATTTTTTGTT 987753 28 100.0 33 ............................ CTGGGCCTCATGGGCGAACGACATTCGCCTGAT 987814 28 100.0 33 ............................ CACGCTGACGGAAAAGCAGCAAACGCTGATGAC 987875 28 100.0 33 ............................ CCAAAACGCATTCAACTGAGATCAACGCATCAT 987936 28 100.0 33 ............................ CGGCTACTGGTCACTCGCCGGCGGCACCGCGCC 987997 28 100.0 33 ............................ CGACTGCAACGCCATCTACACGACTTTGTGCCG 988058 28 100.0 33 ............................ CAGGCCGCAGTCGCGTTAATGGTGTGGACGCTG 988119 28 100.0 33 ............................ TCCCTGATATCTGCAAATGCCTGGGTAAGTCCA 988180 28 100.0 33 ............................ CGCGGGTAGTACGCTGGCGGGCATTCCGTTTAC 988241 28 100.0 33 ............................ CGTGTCGGCGGAGTTTGACAGGCTGACAGCCAG 988302 28 100.0 33 ............................ CTTGGCCCCGCGCCACGGGCGGCACGGTAGCAA 988363 28 96.4 33 .......G.................... TGAGATGGTCTCCGCCCCTTTGACCCGGATCCG 988424 28 100.0 34 ............................ CAGGGCGCAGTCGAGGAAGAAGATACAGATCAGC 988486 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCTCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGCATTAGAATAAATATTTTATAGCCAACGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //