Array 1 76008-78657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYPE010000017.1 Klebsiella pneumoniae strain CFSAN059639 contig00017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76008 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 76069 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 76130 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 76191 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 76253 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 76314 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 76375 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 76436 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 76497 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 76558 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 76619 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 76680 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 76741 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 76802 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 76863 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 76924 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 76985 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 77046 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 77107 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 77168 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 77229 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 77290 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 77351 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 77412 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 77473 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 77534 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 77595 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 77656 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 77717 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 77778 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 77839 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 77900 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 77961 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 78022 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 78083 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 78144 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 78205 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 78266 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 78327 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 78388 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 78449 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 78510 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 78571 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 78629 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28377-29742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYPE010000039.1 Klebsiella pneumoniae strain CFSAN059639 contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28377 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 28438 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 28499 29 100.0 32 ............................. TCGGTTTCGAGCGCGGTGTATTCCTGCCAGGC 28560 28 89.7 32 ..........-.TG............... CGATTACTGAGTCGTTCACGAACCGGCCACCA 28620 29 89.7 32 ........T...TG............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 28681 29 93.1 32 ............TG............... TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 28742 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 28803 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAACT 28864 29 96.6 32 T............................ ATAACTATCAGGGTAGATTCATGAAAAGGGTA 28925 29 93.1 32 ....C.......................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 28986 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 29047 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 29108 28 89.7 32 ..........-.TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 29168 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 29228 29 100.0 32 ............................. GCAGCGGCCTGACGATGATTGATATGAACGGC 29289 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG C [29300] 29351 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 29412 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29473 29 96.6 32 .........................A... CACTACCAGATCCGAATGGACACCCGTAATGA 29534 29 96.6 32 .............C............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 29595 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29655 28 96.6 32 ..........-.................. CACTACCAGATCCGAATGGACACCCGTAATGA 29715 28 89.7 0 ..............C.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 94.9 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATGGGTCTTCCCCGATCATGGTGGGAAGGCTCAGAACGCCATATTCAGCTTTCCGTAGTGGAACATCACCCCCAGTTTAAAGCGCTCCCGGTTTCGGTATCCCCTGGCTTTTATCCTCAGCAGCCT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //