Array 1 11129-10673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000116.1 Kitasatospora phosalacinea strain NRRL B-16228 contig116.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11128 29 100.0 32 ............................. CCGCGCCGGTAGCCGTCCTCCCCGTACCCGGG 11067 29 100.0 32 ............................. TCGTCGCCGAGCGAGGCACGCACAAGTTTTGG 11006 29 100.0 32 ............................. GCGCCGCCCAGCGGGTGGAGCTCGACAGTCTT 10945 29 100.0 32 ............................. ACCACGGAGAAGTACATCGACATCGCCTACTC 10884 29 100.0 32 ............................. CAGGAGGACATGGCCGCGATCGCCGCGGCCAA 10823 29 100.0 32 ............................. GTCCGGCACAACCGGCCAGCGCCGACGGCGAT 10762 29 100.0 32 ............................. CCGCTGGCGATGCTGCGGCTGCGCTGGGAGGT 10701 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCACGGACAACACCTCGCCGCCGGGATCAACTACGGGGAAGGCAACTGGTGACCGTCATCGTCCTCACCAACTGCCCCATCGGACTCCGGGGCCTGCTCACCCGCTGGCTCCTCGAAATCTCCGCCGGAGTGTTCATCGGATCCCCGTCCGCACGCGTGCGAGACGTCCTGTGGGCCGAAGTCCGACAGCACGCGGGCCAAGGCCGGGCCCTCCTGATCCACACCTCGAACACGGAACAGGGCTTCACCTTCCACACCCACGACCACGCCTGGAAACCCGTCGACCACGAAGGCCTCACCCTCATCCACCGACCGGACGCCAGTGCAGCCCCGGCGTCCAGTCCCGCCAAGCCAGGCTGGAGTACCGCGTCCAAACTCCGCCGCTTCGGAAAACGATGAGACGCTGCAGAAAGGGTTCCGACCTTATGTCCGTTATGCCGGAATCAGCGCAGGTTGCAGTTTCGCGCGATATCGACAGGTAAAGCCGCAGGCCATCAAGA # Right flank : TCGGCGAGAACCTCGCCACCGAGGCCGAGCAGCTGCTCCCCCGCGGCGAGGTTGCGCCAGCGGCTCTGCCCTATCCCGCGTGATCGGCGGCGAACACCGCCTCGATGCGGGGTTGCGAGGCCGGGCCCGTGTGGGCAGCCCGGGGGATACCGTCAGAGGTGTACCGTCTGGCCCGGTGCCGGGCAGCCGACATGGAAGAAGGGGTTGGTGGGGATGAGCGCCCAGCCCGCCGAACACGGTCCCGGCGGAGGCCGCCTTGGGCTGCCGCCGATGGACACGGTGCAGGAGCTGCGCGCCGCGCTCCGCGCAGGCCACGGCTACCCCTGTGACGCCGAACGCCTGGACGCCGAACTTGCCGCGCAGTTGCTGCGTTGGGTGCCTGTTGACCGGCTCGACCAGGTACTCGCCGTCGTGGACCTGGCCGTCGTCGCCGAGATCGTCGCCGCCTACCGCGGCCGCGTCCTGCTCGCCGCCGATCGCGACAGCGCCGCCGCGATCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21040-23876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000116.1 Kitasatospora phosalacinea strain NRRL B-16228 contig116.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21040 29 100.0 32 ............................. TACAGTGAAGGCACAAGAGAGGGGCCGGCGGC 21101 29 100.0 32 ............................. CTCCACCGCCCGTGGAAGACCGCGGAGGAGGA 21162 29 100.0 32 ............................. GACAACTACTCGAAGATCGCTGCGAAGTTCGG 21223 29 100.0 32 ............................. CGCCGACCGACTTGGCTTCGAGCAGCGCGACT 21284 29 100.0 32 ............................. AGTTCCTCGGGTGCGGCGGGATTGTTCCAGAT 21345 29 100.0 32 ............................. GCGAGCGCGCGATCGCCGCAGGCCGGGCGCCG 21406 29 100.0 32 ............................. GCCTTCGAAGTGGCGCGGCAGATGATCCAGCG 21467 29 100.0 32 ............................. TCCCGTCCGGGACGGGGTCGTTGGGGCTCGGA 21528 29 100.0 32 ............................. CCCGGGGTCTTCGCCCAGTCCCGGACAGCCTC 21589 29 100.0 32 ............................. CCGGAAGACGACGTGATCGTCGGTGACTGCGA 21650 29 96.6 31 ............................G GGTTCGGCACTCAGCAGGTCTGGGAGCTGAA 21710 29 100.0 32 ............................. AAGGGCGGGCTCTCCAGGGCGTAGTCGGCGTT 21771 29 100.0 32 ............................. CAGGCCGTGAAGTGCAGGCGCCGGTCGCCCCG 21832 29 100.0 32 ............................. CACGGTGGCCGAGGCCTTCCCCATCTCCACCA 21893 29 100.0 32 ............................. ATCACGGCCAGCAGGCACCCGGCTGACCGGGG 21954 29 100.0 32 ............................. TTGTAGGTGTCGGAGAGCTGGGTGCCGAGGAC 22015 29 100.0 32 ............................. CCGACCAGCGAAAAGCGCCAGCACGCCAACGC 22076 29 100.0 32 ............................. GCGGGCTGGGGCAGGGTGGACGAGTACAAGGG 22137 29 100.0 32 ............................. GACCCCGGGGGGGCGATCGAGCGCAAGCTCGC 22198 29 100.0 32 ............................. CAGGGCACGCTGTCCAGCGCGTCCGAGTCGTG 22259 29 100.0 32 ............................. CTCGCCAGGCTGCGACGGCCGGGCAAGGCAAA 22320 29 100.0 32 ............................. GACCTGTTCTCCAGCTGCCAGGCGAAGGGGAT 22381 29 100.0 32 ............................. CTCGGCGAGTCGCCCGACGGCTCCAACCACAA 22442 29 100.0 32 ............................. AGCTCCGACGTCCCGGTCGCACCTTCGGGCAG 22503 29 100.0 32 ............................. GTCTGGAGGACGTCGGGGGCGGCCGGGTCGGT 22564 29 96.6 32 ............................G CCTACCAGGTCGCGCACGTCGGTGGAGCCGAA 22625 29 100.0 32 ............................. CAGATTCCCAGCACCCGATAACACAGCGTAAT 22686 29 96.6 32 ..............C.............. TGCATGAACAGCACCAAGGGGTGGGGCCCGGA 22747 29 96.6 32 ..............C.............. TCCCTTGGCCAGACCGAGAATTCCGCCGCCCG 22808 29 96.6 32 ..............C.............. GCCGACGGGCTGCGCCGGGTCGTGCATGAACA 22869 29 96.6 33 ..............C.............. GCGCAGCAGGAGGTGGTGCGCACCGCGCAGCAG 22931 29 96.6 32 ..............C.............. TGACATGCCCGGCCTGTCCCACGTGACGAAGC 22992 29 96.6 32 ..............C.............. TGCTGCACGCGGACGCGGACGCTGGGTGGGGT 23053 29 93.1 32 .........A....C.............. GACGCCATGTCCCGGTCGCCGAGCAATTTAGC 23114 29 96.6 32 ..............C.............. TCGGAATGTCCTCCGGGGCGCCCGACGGGACG 23175 29 96.6 33 ..............C.............. GGCGTCGACGGCGACTTCGGCCCGACCACCGCC 23237 29 96.6 32 ..............C.............. GCGTCGTTCGTGGGCACAGTGACCTTGACCTG 23298 29 96.6 32 ..............C.............. CTGTCGGCCTCGGTGCGGGTGTCGCCGAGCTG 23359 29 96.6 33 ..............C.............. TCCTTGATCCGGCTCCGGCCCGCCCCGATCCGC 23421 29 93.1 32 ..............C.............G TACGGGATGGGGTTCGCCTCGCCCGTGGCGAC 23482 29 96.6 32 ..............C.............. GTCTGGGAGTTGAAGAAATCGGACATTCTTGC 23543 29 96.6 32 ..............C.............. CGGTCACGGGCTCGCTTATCGGGGTCATACGC 23604 29 96.6 32 ..............C.............. GCTCCGGCCGGCCGAACCGCGGCGCCGAGCCC 23665 29 96.6 32 ..............C.............. AGGTCGAGCGTGTCGGGCGGCGGGGTGTCCAC 23726 29 96.6 32 ..............C.............. AGCGGATCACCGAGGGCTCGGCCCGGCGGGTA 23787 29 96.6 32 ..............C.............. GCCTTCCCGGCCAGCTCGCCTTGCTGCAGGAT 23848 29 93.1 0 ........T.....C.............. | ========== ====== ====== ====== ============================= ================================= ================== 47 29 98.2 32 CTGCTCCCCGCGCCAGCGGGGATGGCCCC # Left flank : CCTAAGGTCAGTTGGCGAAACCACGACCCGACCAGACCCACCGCCAGGCCACCTCACTCCGGGACCGCACACCACTCAGTCCACCCTCCGGGCAGCAAGGAACACCACACGGCCGCTCCGGAAACTACTCCCGGCCACGCTGCCACCATCCGCCCACGAGAAGAACGCCCTGGTCTCCAACCCCTTCGAACCCTCCAGAAGCCCGGACCAATGGCCGAGAACACCGCCCGATGTCATACCGCTGTGGAACCATCCAGCCCCGCTCCACCGATCCTTGACACCTCCACAGCACCACCGAACAACAGCCGACCACCACCACGGCGAACGCCAACCACCCGATACAGAACCAACCAGGCAACCACGGAACCCCGCCTCGCCCGCACGCCGAAGGGCCGCTGGCCCGTCCCAGGAAAGGAAGTGACATGATGTCGCTAATGTCCGAATCCCTGAACCTTGCAAATTCCCGGCTCACCGGCGCATAACACCGCAGGTCAACAAGA # Right flank : GAGGGCCTGACCGGCCAGACGCCCGCCCGCCCCTGCTCCCTGTCGGCGGCGGTTGAACCGTGACCCGCTCTGGCCGGTTGAGTTCTGACCCTCGCGTCGTTGGTTGTCTTGGTTAGTTGTTGTCGGTGGTTGTGGTGGA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCAGCGGGGATGGCCCC # Alternate repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 135-2417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000130.1 Kitasatospora phosalacinea strain NRRL B-16228 contig130.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 135 29 100.0 32 ............................. CTTCCGGACATCTGGCGGCTTCGATCATGTGG 196 29 100.0 32 ............................. GGCGACGGGTCCGTGTCGATCACCTACGCCAT 257 29 100.0 32 ............................. CTGCCCCCGGAGTTGAGGTAGAGCCGGTCCTC 318 29 100.0 32 ............................. CGGCCGTCGTCGAGCAGCCCGCACCGCAGCCC 379 29 100.0 32 ............................. ACTGCGGAGCCGGGCGGTGCTCCGGGGGCCCG 440 29 100.0 32 ............................. CGCATGGAACAGACCACACCCGCTCAGCTGAG 501 29 100.0 32 ............................. GCTGTTCCCCCTGGCCGCCCCGCCCCCGATCG 562 29 96.6 32 ...................A......... GCGGACGCCGCCCCGCACACCGTCACCATCGC 623 29 100.0 32 ............................. GCCTGGGAGGCGGTGGCCTCCCTCGACCCGGC 684 29 96.6 32 ............................G AAGTCCTCCCGCACCCCGGCGAAGCTCACCAA 745 29 100.0 32 ............................. CCGTTCTCAGGCACGCGCGGCCCAGTCCAGTT 806 29 100.0 32 ............................. TGTGCCCCCGAATCCCCATACCGCGTCCTCGT 867 29 96.6 32 ............................A CGATACTGACGTGCGGTCAGTTGTGTCATGAG 928 29 100.0 32 ............................. TCGCCGCGGACGTCGCCGAGGTGCGGCTGCTG 989 29 100.0 32 ............................. TCGGTGGCCGGCCTGAACCCGCTGACCGTCTA 1050 29 100.0 32 ............................. ATGGTCGGCCCCGGCGCGGCCGCCTACCGGAA 1111 29 100.0 32 ............................. GGTCAGCACGACCTTCGAGCCGGTGCCGTACG 1172 29 100.0 32 ............................. AGCACACTGACACCAGGGCGCTCGGCGGCTCG 1233 29 96.6 32 ........................A.... TCGACGTCCCCGCTGTGGATCGGGGACACCGG 1294 29 96.6 32 ............................G AGGCCGGATCTGCCCTGCGGAGCGGACCCCGT 1355 29 100.0 32 ............................. ACCGTGAGCGAGTCGACCACGTCCACCGAGGC 1416 29 100.0 32 ............................. GCCCATCTCCGCCTTGTGCTTCTGCTCCGGCG 1477 29 96.6 32 ............................G ATGCCGGGAAGCATCGGCAGAGGCGTTTCTGA 1538 29 100.0 32 ............................. GGCGACGTGGTCGCCATCGCCTCCGGCCCCGA 1599 29 96.6 32 ............................G TGACTTACCGAAACTCCCCGCTCCGCACACGT 1660 29 100.0 32 ............................. GCCGCTACCTGGGGAAATGGCCTGAGACTGTC 1721 29 96.6 32 ...........C................. CCGGGCCGCGCGGTCGGCACGCTGTTCCAGTT 1782 29 96.6 32 ...........C................. CAGGTGCGCGGCTTCACGGAGTGGTTGAAGGA 1843 29 100.0 32 ............................. TTTGCCACGCTCCACCGACAGCCAGCAACCAC 1904 29 96.6 31 ....................A........ GTCCCCATCCGGGAGAGCGGGAGCGCATCAC 1964 29 100.0 32 ............................. AGCGAGACCGCCCGCCGGTGGCAGCAGCGGAT 2025 29 100.0 32 ............................. TCCTCACCGGCAGCACCGCCCCGGCCGCCACC 2086 29 100.0 32 ............................. AAGCCTCTCCGCCGATGCCGTGGTGTGTCGGG 2147 29 100.0 32 ............................. GGCCCCGGGGCCCGTCCGCGACAGGGGATTCG 2208 29 100.0 32 ............................. CCGGGCACCGCGTACTGGCCCGGCACGGTCAT 2269 29 100.0 32 ............................. ACCTGCGAGGCCACCCAGCGGCAGTTGACCGT 2330 29 100.0 32 ............................. CTGGGCTCGGCCGGTGCGGCCGGGACGCCGAG 2391 27 93.1 0 .....................--...... | ========== ====== ====== ====== ============================= ================================ ================== 38 29 98.9 32 CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : GGGCGAGCGGGGAGATATCTGGCCATACGCGGGGAAACCCGTGGCCATCAGTGGGGCGCTATATGGCCGCCCACGGGGAGGATGTCATGGCCGCCGTCATCTGCCAGAACGGATGCAAGCAGAGGTGCTTGCATC # Right flank : CATGACCATGGTCACCACCCAACTGCATCTGACTCTGCCCACTGCCCTGTTCCGTCAGTGCTCAGGGCCACTCTCGACCTACGCATTACGAGACCATCAGGGTTCATGTTGCGTGGTGCCGCCCCGTGCCTTCTCGTGACGTTTCACCTGATCAGAGCATGTGGGGCAGGTCAACCCGTGCCACTCCATGGTGCGCCGTCCAAAGGCGTCCGTCCACCGGCTGTCCACCAGAGACAGCCTCCCTCAGGGCCAGACGGACGAACTGCTGGGCTGTGGGTTACCTACAAGCAGCGCCGAGCCTCGCCCTACAGGCCCTAGCGTTACACGGAACCGCTCACGTAGGGCCAGGCCGAGAGCTCCACAGTGAGGCGCCTCCCGTCTTCCCCTGCCATGATCAGGGCCACCACCGGCAGGGTCTCCGCAAGGTCTACCTCGTTGGCCTCCGCCTGCGCCTTCGCCTCGGCGCGCGCCTGTTCCATGGCCGGCGCCCAAGATTCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10603-10330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000019.1 Kitasatospora phosalacinea strain NRRL B-16228 contig19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10602 28 82.1 33 ...C.........A.C...A....C... GTGCGTTCGCTGACCCGGACGCCGCGGTTGTAT 10541 28 100.0 33 ............................ GTGGTCACCGGTGCGCCCGGGGAGGGGAAGAGC 10480 28 96.4 33 .............A.............. GCTGGTGTCGATCACGGTGCCGACGAGCGGGCC 10419 28 100.0 34 ............................ GGCCGGCAGCACCGCCAGGGTGAGAACGTCACCG 10357 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 5 28 95.7 34 GTGACACCCCTGCGTGTGCGGGGAAGAC # Left flank : TTCTGGCGGAGAACATCGTGGGCGCCATCATCATGCGTGGGAGCTCCCTTCGCCGAGACGACCCGGATCAACTGTCGATCTTCAGCTCGCGGGAGTTCTTCATCGTCGCGGACGGCGACCTTCCGTACCTGGGGAGTGTTTCAACGAGCTACCGCAAGATCTGGTTCGACCTGCCGTCCAGCACCCCGCACGGTCTGCAGAGGAAGAGATTCTCGGAGAGCGAGGCAGGGAGCAGCTACCTGCTGTGGCCTGATCCTCCGCTCGCCGCCACCGGTGATGCCCTCGAGCGCCTCGGCATTCAGCCTGTCGGCTGATCAGCCGGTGTCCTTTGGTCTCGCCGTGGCAGACATCCGCCTCACGCCATCGCAGCACACGCCCGCTGAGCACCCCGAACGGGCGAGGAGAGTCGGAGTTTTGCCGGTTCCGACGACGACGTCGATGCGGGGTCTCTGCGCGTGCAGGGAAGAAACATGGTCACAAGGCCAGCGGCCCATCGGGTC # Right flank : CCTTTTTGACGTGCTGTGATGTTGCGGCTTTGCTGGTTCTTGGTGGGCCAGGGCTTGCCTGGAGATGAGCTTACCTCGCGGGGTCTGTTGTCCGCGTCGTTCTGTGGGTCGTGGCAGTCGGGACTGGCGCGGTGCGCCTAGATGTTCGGAGAGTTGCGGCGGTGATGGCCAACTGGCCGGGCGGCAGCTACTGAGTCGCATGCCGATGTTTTTTGATGCCTCACACGGATATCGCTCGCGACCGGGTCGGCTCTTCTCCTGACCTGCGTGGCAGGCGAGAGGCAACGCTCATGTGACGTCACTGCGCGATACAGGATCGGGGTACCTGATGAGAATCTGCAGTTGAGTGCGGGAGCGGTGGTGGGCGGTGTCGGCCCTGCTTGGCCAGTTGGTGTGAGCGTTCCAGCTTCGGTGCGACTGTACGGCATGGCGTGCTTGGGCTGGTCTTTGGAACCTCACTGCCTGTCCTGGTGCGATAAATTACCCGCATTGGATGTGTG # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACACCCCTGCGTGTGCGGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 1982-1344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000200.1 Kitasatospora phosalacinea strain NRRL B-16228 contig200.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1981 28 82.8 32 ..A.-......A.C..........A.... TCCCATCTCGGACATGCACGGCTGCGGAAGCC 1921 29 82.8 31 .........A.G.CA.............A TCACCCTCCACCACGGTGAGCCCGTCACCGT T [1896] 1860 29 79.3 31 ........T..GTCT.............A GCGCCCCGAGCGCGGCGCGCACCGTCTTGAG T [1835] 1799 29 89.7 31 ...........G.C..............G CCCGCGGCCGGCTGATGAACCTCGGTTTCCT T [1774] 1738 29 86.2 31 A..........G.C..............T GGGGCACGGCGCTCACCGACCGGCGGACCTA T [1713] 1677 29 100.0 32 ............................. TGGCAGCGACTCCAAGCCCGGAAGCTGCCGGA 1616 29 100.0 32 ............................. CGCTGGCCGACGGGCGTCGTCGCCCGCTACCT 1555 29 96.6 32 ...........................T. GGGGGCTCGGTGTGGGAGCTGGCCGACGCGAT 1494 29 89.7 31 ...........G.C..............A TGGAAAGGGCGTTGAGTTCCGCCGACAAGGG T [1469] 1433 29 82.8 31 ...........G.C...A.........TA GCTACATCGACGGCGTGACCGCGCCGGCAGA T [1408] 1372 28 82.8 0 ...........G.C....C.-.......A | T [1348] ========== ====== ====== ====== ============================= ================================ ================== 11 29 88.4 32 CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Left flank : CCCTCGCGCGGATCGACCATCAAGTAGAGGGGAATGCCCATCAGCGGGTAGTCGCGGACTTTGCCGACCAGGTCGTTCTCGGGGTTCGACACGGAGACGATCTCAACGGCGATCTCGGCGAGTTCCGCCGGCACCTCGTTCCCACCGAACTCCACCACCGACACCGGGATGTACGTCAGGTCCGGGTTGCGGAGCTTGCCGACGTTCGGCGAGGCCAGATCCGTGTTCTCGCTGGGCATCAGCCCCGCTGGCCGGTGGGCGTCGAACTGCTCCCGCACGATGAGCAGGTTCCGCTGATGGATCACCGACGGCCCGGCCATCATGATGATCTCATCACCCGACACCTCGACCTTCCACCCGGCAGGAGGTGCCAGGCTCTGCGCGAACTCCAACAACTGCGCGTGGCGTTCAGGAACACGGAACTCAGGCATACCGCCATCCTCCCACCCCACACCCATGCCAACACCCCACGCCTTACAGCCCGCCAACACGCCCTCGAC # Right flank : GCAGGTCCAATGGGGCTTGGGGACAGGTTCCTCCTCGCACCCACAGGGCCTGGACCTGAACTACCAACTGGCAGGCCGCAGAAGTCACAACACTGTGATCTGAATGATCGTCAAGCGTTGGGCCTGGTCGTTCATCAGGAACATGACCAGAAAGCGTTGAGTGATCAACAGCCGCGTCACGCCATCGTCCGCACCGTAGGGCACCGTCGTTCCATGCGGGTCCTCAGTCGCCTGGAACAGCGCAAGAGACAACTCCTCACCTAGGGATGGCGGCAGAGAGTCCCAGACAACCTGCTGTACGGAGTCGACATGAAGCGAGTACGCCATAACCGGAGCGTAGCCGGGCAGCTACGGATCTGACGAGAAAATGGGAATATCTAGGACCCCGGGAGACTCAAGCTGCGTGGTTTCGATTCCTGGTTACCTCGGCGCGCACCTTCTCCGTGACATCGCTCCACTGGCCCGGGAGCTCACCGCCAGGTCCCGCGTGCTCAAGAAGA # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Alternate repeat : CTGCTCCCCGCGCCCGCGGGGATGGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 3330-2628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000200.1 Kitasatospora phosalacinea strain NRRL B-16228 contig200.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3329 29 79.3 31 ACA........G.C.....A......... CGGTGCCGACCTTCACCCCGACGCTGCCTGA T [3304] 3268 29 100.0 32 ............................. GACACCCTGCCGGTCGCGCTGGCCAAGCTGGA CG [3256] 3205 29 96.6 32 .........................T... TGGTCGTGTGCGGGCGGGTGACAGTTTGTGGA 3144 29 86.2 32 ...T.......G.C...........T... GGGTCCAGGCCCGTCGTCTCCAGATCCAGGGC 3083 29 86.2 32 ..........TG.C...........T... GCGACTTACTGCGCGTGATCGCCTCGCTCGCT 3022 29 93.1 31 ...........G.C............... CCGGCACCAACTTGACCGGCGCCGCGCCCTT T [2997] 2961 29 96.6 31 ..............T.............. GGTGGACGTCCTCGTACGTGGCCGGCGTGGA T [2936] 2900 29 93.1 32 ........................CT... GCGACCGCCGCGGCACCGGCGAACCTGCTGCC 2839 29 96.6 32 ........................A.... AGCCTGAGCAACGTCCAGGTGGTCTCCGGCGG 2778 29 96.6 33 T............................ GCGACGTCCTCCGGGCGGGCGGGGACGGTGGTG 2716 29 100.0 32 ............................. GGCTGCGGGCAGCCCTACCTGGTCGAGCCGGA 2655 28 86.2 0 ........-..A.C...........T... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 92.5 32 CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Left flank : CTCTCCTCCTGACCTCTGAAGATCAGGATGATCAGACGACTGCGAGGTGGGTCCCATTTGATCCGCCGTTCAGCGGTCAGCTTTCACCCGGCGCC # Right flank : TACAAGTTCAGGTTGTGTAGCGGATCAGGTTGGTTGTGGTGAGGCCGAAGTCGAAGGGAGGCGGGATCGGGACGGTGTCACCGAACTTCCCGGTCCACTGCTGACGGTACGACCCGTTTGACGGCTCGGAGAACAGGACGACCGTGCCCTCGCGCGGATCGACCATCAAGTAGAGGGGAATGCCCATCAGCGGGTAGTCGCGGACTTTGCCGACCAGGTCGTTCTCGGGGTTCGACACGGAGACGATCTCAACGGCGATCTCGGCGAGTTCCGCCGGCACCTCGTTCCCACCGAACTCCACCACCGACACCGGGATGTACGTCAGGTCCGGGTTGCGGAGCTTGCCGACGTTCGGCGAGGCCAGATCCGTGTTCTCGCTGGGCATCAGCCCCGCTGGCCGGTGGGCGTCGAACTGCTCCCGCACGATGAGCAGGTTCCGCTGATGGATCACCGACGGCCCGGCCATCATGATGATCTCATCACCCGACACCTCGACCTTC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 490-2240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000203.1 Kitasatospora phosalacinea strain NRRL B-16228 contig203.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 490 29 100.0 32 ............................. TACGGCCGCATCGCCTGGCGGTACGGCTCGAA 551 29 100.0 32 ............................. ACGGCGACCAGGCCGCCGACCCAGGGGCCGCC 612 29 89.7 32 ..........CC.......A......... GACGCCAACCTGTCGGCCGCCGCCCGAGACGA 673 29 86.2 32 ..........CGAG............... TGCCCGAGCCGAACTGGTCCTAGAACGACAAG 734 29 96.6 32 ..........C.................. TCCTCGCAGGCGCCGAGGGTCGAGCGATGCGG 795 28 86.2 32 ..A..-....C......G........... AGCCCCCGCTTCATTTGCAATTAGGTCCCCCT 855 29 86.2 32 ..........C......G.A........A ATCGCGGATTTCGTCGACCTCCCGCACATGCC 916 29 79.3 32 ..A.......CC.G...G.......T... GCCATCGGCTCCCGGCCGCTGGTGATCCGCAT 977 29 79.3 32 ..........CC.G.A.G......G.... GGGAGCAGGAGCGGATCCTCGCCGACGGCCTG 1038 29 75.9 32 ..........CC.G.A.G......GT... ATCTCCCCTCGCTGGGCGGCGTCGGCCTCCTC 1099 29 79.3 32 ..........CC.G...G......GT... GCCGGGACCGATCTGGAGCTCGCGGGCTTCCT 1160 29 86.2 32 ..........CC.G...G........... ACGGAGAAGGCCGGCCACGGGCCGCCGCTCGA 1221 29 89.7 32 ..........CG.....G........... GCGGCCTCCAGGTGCAACTTCGGGGCATCGCG 1282 29 89.7 3 ..........CG.....A........... GGG C [1287] Deletion [1315] 1315 29 79.3 14 .C..G.T...CG.....G........... GCGACCTCGGCGAG Deletion [1358] 1358 29 82.8 32 ....A.....CC.G...G........... CAGCGCAGAACTTCGCCCTCACCGACGATCTT 1419 29 82.8 32 ..........T......G..A..TG.... ACCACACCGCAGGAGGACCGATGAGCTGGATG 1480 28 79.3 93 ..........C......G....-TG.T.. GCACGGGTCTTGATCGGGCGGGGCTTGGACTCCTGCTCCCCGCCCGCACGGGGATGCTCTCCGCTGACACCCCGACAGCAAGGGCGGCCACCT T [1506] 1602 29 79.3 32 ..........CC.A...A......GT... GCACGACGACGACACCGCCCCAGCGGACGAGC 1663 29 82.8 32 ..........CC.G...G......G.... TGCTGGAGCACCTGTTCCTCGCCGGTGCGCTG 1724 29 79.3 32 .......T..CG.....G......GT... TCGCGGCCCGTATGCACCGCTTGCGGGCCCAA 1785 29 86.2 32 ..........CG.....G......G.... ATCACGATGATCCCCGAGGTCACCGGCACCAT 1846 29 79.3 32 ..........TC.G...G.A....G.... GCATCGAAGGCCGTCGCCGTCGAGTTCCAGCG 1907 29 82.8 32 ..........CC.G...G......G.... TCCGGCTCGCCGGACGACGATCGAGCGGGCGA 1968 29 79.3 32 ..........CC.G...G......GT... AGCCGGGTCCTGCGGGTGGCCCAGGTCCACAG 2029 29 75.9 32 ...T......CC.G...G......GT... TTGGCGTCGATGAGGCCGTCGCCGGTGAAGCC 2090 29 89.7 32 ..........C.T....G........... CACAAGCCGCGCTTCAAGGGGGCGGACGAAGG 2151 29 82.8 32 ..........CG.....G......G...A CCGACCCGGCCACCCCCGACGTCATCCAGGCG 2212 29 79.3 0 ..........CG.....G......G..GT | ========== ====== ====== ====== ============================= ============================================================================================= ================== 29 29 84.3 33 CTGCTCCCCGAACCCGCCGGGATGACCCC # Left flank : GCACCACCCGCTGGAACAACTCCCACAACTCGTCCGGCACCAGACGCTCCACGATCAGCACGCGAGCAGCCTACAAGCCCAAATGAGATGACTTCTTACCACGTGATCAACGCGGCGTCGGACTGCTCCCCGCGCCCGCGGGGACGGTCCCGTCCCCCCGACGTCTGCCGGGTACTTCGCCGACTGCTCCCCGCGCCCGCGGGGGAGCTGACGGTCGTGGTGTCGGAGGACCGTGGGAACATGCGCCCGCACCACCGCGCTCCTTGACACCTCCACAGCACCACCGAACAACAGCAGGCCACCGCCATGGCGAACGCCGGCCGCCCGGTACAGAACTAACCAGGCAACCACGGAATCCCACCTCGCCCACACGCCGGAGGGCCGCTGGCCCGTCCCAGGAAAGGAAGTGACTCTATGTCGCCAATGTCCGAATCCCCGAAGCTTACGAATTCCCGGCCCACCGGCGCATAACACCGCAGGTCAACAAGAC # Right flank : TGCCGGGTCCCCATCTCTCGCCTGGCCCGCAGGGAGGTGGCTCTCGCCGTGTGGAGACGCAGGTCGTTGCGGGTGCTGTCGTCACGCGAGTGGGCGGCCCCAGACCTGTACGGTGCGGGTGGGGTCGACGAATCGGCCCAGCTCGCCCACGTCGACCCAAGAATGGTTGGCCCCGTGGTTGTGGGTGAGCAGGGATTCCGTCACCTCGTGCGGCGCGAGGTCCTCGTTGTACATCCCGGCCAGCCCCTGGCCGGTGTCGGCGAACTCGTACAGCCGCGCGTAGATCTGGCCGTCGCACTCCCACTCGTGTCGTACGACGGGTTTCTGCAGGACGCTCTCGAACCACGCGGCCGCTGCTTCGGCAAGGACCCGGGAGTTGCCGGTCGCCTCCATGGCCAGGCCCGTCGGTTCCTTCGGCAGGTAGTACATCGCGTAGGAATGACCACTGACCAGGTCACCGCGGACCGTGGGGCCGGCCATGTGCACCCCGAAGGTGGCCA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGAACCCGCCGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3000-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000089.1 Kitasatospora phosalacinea strain NRRL B-16228 contig89.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2999 29 100.0 32 ............................. AGCTTCGCCGCGTCGGTCGGGTCGCCCAGCAT 2938 29 100.0 33 ............................. ACGATGTGCGCCAGCGCACCTCGGGCCTCGGTC 2876 29 100.0 32 ............................. CCTGGTGCCCCCGCATTTTCCGCGCGCAACGG 2815 29 100.0 32 ............................. CGCATCGACCAGTACCACCACCTGTTCCGCTC 2754 29 100.0 32 ............................. GGCCTTGCCTCCCGGGTGACTTGGGGGCGAAC 2693 29 100.0 32 ............................. CCGGGCTCCGGCCGGATGCCCGGGTCTAAGGT 2632 29 100.0 32 ............................. GCATCAGCGGTCAGAACGGCGGTTCCTCCGAG 2571 29 100.0 32 ............................. CCACCGTGCCCACGCTAAGACGCGCCCCGACC 2510 29 100.0 32 ............................. TCCGCGTACTCGTTGGTGAGGTCGGGGAGTTC 2449 29 100.0 32 ............................. CTGGGGCGCCGTGTTCGGCCAGCCCGTAGGCT 2388 29 100.0 32 ............................. GGACGCCGGGAGGTGAACCGCCTCGACGTGTT 2327 29 100.0 32 ............................. CCCCTGACCGCGTGGAGGGCGAAGAACCCCAA 2266 29 100.0 32 ............................. AGGACGCTGGCGAGGGCGGGTGCGCCGAGGTA 2205 29 100.0 32 ............................. TGCCGGTCCGTGGGGCGTGGTTGCCCTGCGCT 2144 29 100.0 32 ............................. GGCCACACCGTTCCGAACGACGGTGCGACGGC 2083 29 96.6 32 ............................T GATGCCGATGTGCACTGTGCCTCCCCGCCGTA 2022 29 96.6 32 ............................G TCGATGGTGATGCTCCGGGGCGCGTCAGTGCC 1961 29 100.0 32 ............................. TCGTCGACCTCGGCAAGAGCCTGCGCCGCCGC 1900 29 100.0 32 ............................. CCTGTCGCGACCGCGGTGGCGACGGAGCCCAG 1839 29 96.6 32 .........................T... TCGTCTCTCACGGGTGCCTCCAGGGAATGGCG 1778 29 96.6 32 ............................G GGGCGGTCAGGTCGCCGCCCAGGGTCGCGTGG 1717 29 100.0 32 ............................. CGCGTACGGCTCCGGCCACGGGGCCCTGAACG 1656 29 100.0 32 ............................. CGGCCCATCAGCGCGATCTCGCCCGCCAGCGG 1595 29 100.0 32 ............................. TCGGCCGAGCCGACGGTCGCCCCGCCAGCCAG 1534 29 96.6 32 ............................T TCAGCGATCCGATCCTGCTCGGCCACCGGGAG 1473 29 100.0 32 ............................. AGCATCAGCATGGCGGCGCAGGCGTACTTCTC 1412 29 100.0 32 ............................. CGGTTCAGGTGGCCGCTGCAGAGGCTTACAAG 1351 29 100.0 32 ............................. AGCAGGCCGTCCAGGTGCCGCTCCCGCTGCAG 1290 29 100.0 32 ............................. GCCGGTGAGGCGGAGCGGGCGATCTTCGGCGA 1229 29 100.0 32 ............................. GGGTCGCCGCCGGGCACGCAGCCGGAGCGGAC 1168 29 96.6 32 ............................G CGGGCGGACAGGACGTTCGCAGCCATCTTCGC 1107 29 100.0 32 ............................. TCCTCACCAAGGTCAAGGAAGCCGCCCCTGCT 1046 29 100.0 32 ............................. CACTCCGGCAGCACCGCGGGCTCGGCGCCGGC 985 29 96.6 32 ............................T TCGCCCGCCGCCAGATCGCCAGCGAGCAGGAA 924 29 100.0 32 ............................. TGCCATGAGAGGCCCGCCACATGCCGTGGTTC 863 29 100.0 32 ............................. TGCTGGTGGAGCTCGGCGGCGTGCCGGAGGAA 802 29 100.0 32 ............................. AGCCTTACGTCCGTGAGGACTTGGGCGCTCAT 741 29 100.0 32 ............................. TGGCCGCCGAAGAAGGCCACCGCCGAGCTGAT 680 29 100.0 32 ............................. TTCGGCAAGGAGTCCTGCAGTGCGGCGCCCTC 619 29 100.0 32 ............................. TACCAGCTGCAAGACGGCATCCGACCGGCCGA 558 29 100.0 32 ............................. CCCTACTACGCGTCGGTGGAGACGGAGGGGTT 497 29 100.0 32 ............................. GCTCCTCGGCCCCGTGCGCACCGCACGCCACG 436 29 100.0 32 ............................. GGTTCGCCGCGGTGCTGCCCGCCGGTCAGGCC 375 29 100.0 32 ............................. CCGTGGTTCGGTCGGGGACTGCCGCCCACCGG 314 29 100.0 32 ............................. TCCCCCGCGGGCATCGCCGCCCTCGCCGCCTG 253 29 100.0 32 ............................. GTGTGGGCCGCGGAGGTGCCCGAGTTCCTCAT 192 29 100.0 32 ............................. ACATGACGTTCGTCGGTCCCACGGGTTCCGGG 131 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : CCCCCCGCGAGGGCGTACTCGTTCCACCTCAACCCCACTGCCCGCACCGCTGCGGCACCAGTCGCATCCATGCGCTGGAAAGCCGGGGTCGCCTTCCCCAGGTCGTGCACACCACACAACCACACGAACAACAACCGGCCCCGACCCCGACCACCCGCCACCGCATCCAGCCGCCGACGCGTCACGGGCGGCAGGTACTCGTCCCACATCACTTCGGCCACCGCGGCCGTGTCCAGCATGTGCGAGATCAGGAGATTCGCCGTCCCTCCGGCCTTCCCCGCCGACTTCCCCCACAACGCCCCCAGCCACCCGGCCGTCTCCCCCGAGAGCTCCCAACTCCCCACAAGTCCGCCCACCTTATGTCTCCGATCCACTACGCTCCGGAGCGTAGAAGACCCCACTGACAGTCCCGGACATCACTCAAACCATGTGCACCTCCCCGCTGAACCCAACTGACAAAAACACCACCCCTTGACCCACAACACCCCAGCTCACCAAGC # Right flank : TGCCTGTCAACGGCCATGTAGTTCGCCCCGCAGGCGGCCAGGGATCTGCCCCGCTGGCGGCCAGCTGGATGTCCCCGACGGCGGCCAGATAACTCCCCACCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12706-15725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYE01000089.1 Kitasatospora phosalacinea strain NRRL B-16228 contig89.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12706 29 100.0 32 ............................. GGGGACACCGCCGTCGACGCCAACGGCTTCGA 12767 29 100.0 32 ............................. CTGACGCCATTCGGGATCCCCCTCAACCCCTT 12828 29 96.6 32 ............................T CGCCCTGGTGGCCGCCGAAGGTGCCGTCGGCA 12889 29 100.0 32 ............................. TACCAGGCGGTCCAGGCCCGGCGGAACCCCGA 12950 29 96.6 32 ............................T GCCGCCGAGCTGCAGGTGGCCCGGCAGCAGCT 13011 29 100.0 32 ............................. CCGGCAAGGTGGTAGCCGTGGCCGGCGCCGCC 13072 29 96.6 32 ............................T CCCGCCCGCTCCCGCACCACCCACGCCCGCGA 13133 29 100.0 32 ............................. GGGCTGCGCGCCGAGGTCGGCTGGTTCGACCG 13194 29 96.6 32 ............................T CCGTCAGCGGACGCGGTGTCGTCAGTGTTGAG 13255 29 100.0 33 ............................. GGGGGGCGAGGCGGGCCCGGTCTGTGACGGCGG 13317 29 100.0 32 ............................. GTCGCGCTCGGCGACCGCGCGGCTGATGTACC 13378 29 100.0 32 ............................. GTGGCCTTGACCTCTCCGGCCGCCTCGGCGAT 13439 29 100.0 32 ............................. GCTGCTGGCGCGACGAGACGTGCGCCGGGCCC 13500 29 100.0 32 ............................. CGGGACACCCCCGGTTGCCCGGGGAGCTTGTG 13561 29 100.0 32 ............................. GCGAGGACCGCGCGGCCGCCGAGCGTGAACGC 13622 29 100.0 32 ............................. GCTGACGGAGCGCACGGCAGGCGGGGCGTACA 13683 29 100.0 32 ............................. CGATACGGGCGCGTGCCTCGGGGCACCGTGTC 13744 29 100.0 32 ............................. TGGTCGGGGCGTACCAGCGGCTGCGGAAGGCG 13805 29 96.6 33 ............................T GCTCGGAATCCTGGAATGTCCCAGGTCAGAGCG 13867 29 96.6 32 ............................A GCCAGGCGCGGTGTACGATCCGCGCGCCGGGT 13928 29 100.0 32 ............................. GAGTACTCCACGATCTTCCGGCAGATGGGCCT 13989 29 100.0 32 ............................. CTGGCCGCGATCCCCTCCCGCGACAGGCCCTC 14050 29 96.6 32 ............................G AACTGCTCTAACCCCACCGGCCGCCGTTGGCA 14111 29 96.6 32 ............................T CCCCCCAAACGATCATGCTGTTCTTGCAGGTC 14172 29 96.6 32 ............................G CACGGGTTCGGGTCGCAGGACGGCCGGTCTGG 14233 29 100.0 32 ............................. TTTCGAGAGGAAGCCCGGGCTGATCTGAGCCC 14294 29 100.0 32 ............................. CTCACCGACACCGAACGCCGGATCCTCCGCCA 14355 29 100.0 32 ............................. CAGCCCGACGGCACCCCGCGCGGCCTCACCTT 14416 29 100.0 32 ............................. GAGTACATCCGGCACCTGGAGCGCCACGAGTC 14477 29 96.6 32 ............................T CTCGCGCTGTCCGAGCTGCGGTTGCTCCACGG 14538 29 100.0 32 ............................. GAGCTCGGCCACAACCCGCACGCCTTCGTCTT 14599 29 100.0 32 ............................. TTCCCGCCGCCCCGTTCCGGACCGGCCGGGAA 14660 29 100.0 32 ............................. GCCCCCGCGGCGCGGTTGATCCGGGCCACGGT 14721 29 100.0 32 ............................. GGCAGGGCAGGGCCTGCAGGTCACTGCGGGCG 14782 29 96.6 32 ............................T CTGGCCTCGATGACGGGGACCTGGCTCGGCGG 14843 29 100.0 32 ............................. AATGAAGCGGCTGACGGGCGGCGACCCGATCG 14904 29 100.0 32 ............................. CACCCACCGCACCACCCGCCAACACCCCTCAG 14965 29 100.0 32 ............................. CGCGAGGCGAACGACATCGCCTTGAACGACCC 15026 29 96.6 32 ............................G CCGCGGTGCGGTTCGGCCGGCACTTCCGCTCT 15087 29 100.0 32 ............................. TGAGTCGAGACGCCGAGGGCGACCTTCAGCTT 15148 29 100.0 32 ............................. GCCGCCCACGCCACCCTGGCAGGCCAGCGGGA 15209 29 100.0 32 ............................. CTCGTCGCCGAGACCGCGTTCGCCCACCTGCC 15270 29 100.0 32 ............................. ACGTTGCCCGGCGGGAGCCGCTTCTCGGCCTC 15331 29 96.6 32 ............................G CGGCCGAAGCGACTGGCGCCCGCCGCCGACAA 15392 29 100.0 32 ............................. CACGTAGAGGCCATGCAGGAACAGGCTGACCA 15453 29 100.0 32 ............................. GCGCACGGCGAGCGCCTCAGCACCTACACCGT 15514 29 100.0 32 ............................. GCGGCGTCCGGCTTGCTGGCGCCCCAGTCGTC 15575 29 100.0 32 ............................. TCCTGGCCCGACGTCCAGCACCGCGAGCCGCT 15636 29 96.6 32 ............................T CTGACGCACCGTCGGGCAGCACGGGCGAGCAG 15697 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.0 32 CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : ACCCCGGACGGCATCGACCTGGCCGATCAGGACGTCAACCAGCTGTGGGACGAGAAGGTCGGCACGGTCCAAGGCGGCGTCAACTGGTCTGCTGGAGGAGAAACTTCCCTCCTCCAGGCCATCGACCCGGGAATGGGCGACGAGGACGAACACCTGGCGATCGTCGGCCCCGAATTCGACAACGACCCGAAGCAGCCGCCGCGATGACCGTCATCGTCCTGATCGCCGCCCCCGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCCACGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGACCTCCTCGCCACCCGCATCGGCACCGGCCAAGCCATCCTCGTCGAACCCGCCACCAACGAACAAGGCTGGACCGTCCGCACCGCCGGCACAGACCGCTGGAAGCCCATCGACTTCGACGGACTGATTCTCTCCGCCCGCCCGACCCGATAAAACCGCAGCTCACGAAGC # Right flank : CGGCTCGTAGACGAGTCCGCCGGGCGGGCAGGCCTCGGCCCCGCGCAAATGTTTATTGTAGGCCAGAGGGGTTCAGGCAGGTGTGGGAACGTGCTGCGCAGGTGGGTGCGGGCGAAGCGGCTCCAGCGGGCCTTGGAGTGGGAGACCAGCAGGACCTGGGCGACGGCCAGGCGCAGACCAGCCCCGGAGTCCGTCAGCCGCGGCGGACGTCCTGAGCATGGCGTTCAGATTAGATGACCGCCGATCCGTACCCAGAGCGCCGTCAGGAGGGTGTCCAGCTCTTCGGTTGTAACAACCCGAACCCTGGACACCCTCCCTGTATGTTTGACGCGGAACCGGCAAATCCAACCGACTTCTGAGCCACTTGTCTGGCGCCGTCCGCACCTTATGGGCGACGACTGCCTGGTCAGAGCCGGGCCACTCCGCACCTCACCATAACCACCGGTATCGCGAGTTCAAGCTGAGCAGGCACATAGATTGCGTCCCAGCTGGATCGGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //