Array 1 843897-846955 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP043765.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-SAL0043 chromosome Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
843897 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA
843958 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC
844019 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC
844080 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA
844141 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT
844202 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT
844263 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC
844324 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA
844385 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA
844446 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA
844507 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC
844568 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG
844629 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT
844690 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG
844751 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC
844812 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG
844873 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC
844934 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC
844995 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC
845056 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC
845117 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG
845178 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC
845239 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [845259] Deletion [845279]
845281 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT
845342 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT
845403 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA
845464 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC
845525 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC
845586 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC
845647 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA
845708 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA
845769 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA
845830 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT
845891 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT
845952 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA
846013 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA
846074 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT
846135 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA
846196 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT
846257 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT
846318 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT
846379 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC
846440 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT
846501 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT
846562 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG
846623 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
846684 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT
846745 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC
846806 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
846867 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC
846928 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================ ==================
51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.17
# Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 863501-865910 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP043765.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-SAL0043 chromosome Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
863501 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT
863562 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT
863623 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT
863684 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA
863745 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT
863806 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC
863867 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT
863928 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT
863989 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC
864050 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT
864111 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC
864172 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC
864233 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT
864294 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT
864355 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG
864416 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT
864477 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC
864538 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA
864599 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC
864660 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC
864721 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG
864782 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC
864843 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC
864904 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC
864965 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA
865026 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT
865088 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA
865149 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT
865210 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC
865271 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA
865332 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT
865393 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT
865454 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC
865515 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG
865576 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC
865637 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC
865698 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC
865759 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT
865820 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG
865881 29 100.0 0 ............................. | A [865908]
========== ====== ====== ====== ============================= ================================= ==================
40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA
# Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//