Array 1 318-106 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000001.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317 29 100.0 32 ............................. CGCGCGCTCCTGGTCCTCCTCGGCGGCGCCCT 256 29 96.6 32 ............................A AACAGCGGCGCGCTGGACCGGATCATCGACGA 195 29 100.0 32 ............................. CACGCGGCGGTGCTCCGCCTCCAGACGGGCAC 134 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCGCGGGGGACTACCACGTGCCCAGGTGATGGGTGCGCCGTACATGAACTCACTGCTAGGGAAGCTGACGAGGGCTGCTCCGACCTGGGTGCCGCCACACACAGTGGAGTCAGGTGTTGTTGTCGTCTGGTGCTGCACTGGAATTACAGCTTGCGGAGCAGCGCGAACGTCCTGACGTGTGGCTGTCGGCTACTGATTCGCCTTCATGGGCGCGCGTTTACCCAGACCGCGTCGAGTAGGGCGGCCCTCGCAGGCTGTGGGGGGAACTCGAGCAGGCCCACGCCTGGTGGGTCCAGCGCGGCCGCCCGGAAGTGTCAGAGTTCGGGCTGACGGTGGGACCGCAGGGCCATGTGGTGTGGTTCGAATCCCCCGACGGCCCCTCATGGCGCCATTGAGGGGACGATGCTCGGGAAAACGGTTTAGAGTGTCGTGTATGGCGAAGCTGCCCACAATCCAGATAACGAGGAGATAACGCCTCGCGAAATTGCAGGTCAGCTTCG # Right flank : GGCAGGGCCATACTCATCGTTCTTCTGGCGCGGAGACCCCGGGCTTCAGCCCTGGGGAGGAAGCGCCATCCTCCCATCACAGATCGTTCTTAACTGATCTTCTAGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 38-2514 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000019.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 38 29 100.0 32 ............................. TTCTATGGGCCACCCACCACCAAGAAGACGGA 99 29 100.0 32 ............................. TCTGTCAGCTGCTGGGGTTGCGTGACGTGCGC 160 29 100.0 32 ............................. GCATGCGGGGATGACGTGCGTGGGGATCCCGT 221 29 96.6 32 ............................A ACTTAAGAAGGAAAACCCCCCTACCCCCCGCC 282 29 100.0 33 ............................. GCGTGACGTTCCCCGCGGCCCGTTCCTGAGCAC 344 29 100.0 32 ............................. CAGCAGTTCGATTTGCTCCTGTTTCTGAGAGC 405 29 100.0 32 ............................. TCGGTGGCGGCGCACAACCTGCTGTGCACCGC 466 29 100.0 32 ............................. CGGGCACCGCACGCTCGCAACTGGGAGGACCT 527 29 100.0 32 ............................. CGTTCAGCAAGCTCTTGTTGGTAGAAGTGCTG 588 29 100.0 32 ............................. CCCAGGCCGCCTACCGTCGGGCATCCCGACTG 649 29 100.0 32 ............................. TCGGTTTTCGAGGGTGAGGATTTGACGCTCGA 710 29 100.0 32 ............................. GGGCAGTACTGGCTGCGATCCACATCATTTTT 771 29 100.0 32 ............................. GTATCTTCGATACCACAGCGCCGCGCACGCGC 832 29 100.0 32 ............................. CCGACCTGACACCTTGATCATGTACTTGCCGC 893 29 100.0 32 ............................. ATCCACCGAAACGGGAAAGGCCGGGAGCGCAC 954 29 100.0 32 ............................. GGGTGAATCACCCCGTTGAACCGGCTTCGATC 1015 29 100.0 32 ............................. ATGCCGACGCGCTGGCTGCGCTCGGCCTGGTG 1076 29 100.0 32 ............................. ACCAGTACGACCTTGGGGATAAGCAGGAATTC 1137 29 100.0 32 ............................. ACACCCACAGGATTCACCTTGTGGGTGTCTGC 1198 29 100.0 32 ............................. ATCGTCACCGCTTACCGTGCCCCGCTGGTTTC 1259 29 100.0 32 ............................. CCCCTCATATGCGATACTACGGCCCTTGACAC 1320 29 100.0 32 ............................. GCCTGGAGTCAGCGGCAACTCCAGGCCTTTAG 1381 29 100.0 32 ............................. CCCTCATCCGTCTAGACGCCGCCTACCACGGC 1442 29 100.0 32 ............................. AGGAGTCCTGCCGTTTTCCGGCAGTGACTCAG 1503 29 100.0 33 ............................. GAGTAGCGATGGCTGTCATCGTCAACCCCCGCA 1565 29 100.0 33 ............................. ACGAGGTCCCCGGGAATCTCCTGCCCCCGCTGT 1627 29 100.0 32 ............................. CGGCCTTAGACAGGCTGGTGGATGCGGGTGTA 1688 29 100.0 32 ............................. GCCCCGAACAGATCGACGAACTTCGGGCCCTC 1749 29 100.0 33 ............................. GTCAGCACCGAGAGCGCGGAGCAGGCCCGAGCT 1811 29 100.0 32 ............................. CGTTGGAGGAGATCGTCACCGTGGTGGTGGCG 1872 29 100.0 32 ............................. CAGCACCTGGATGTTGGGGATGGTCTCAGCCA 1933 29 100.0 32 ............................. CGGCCTTAGACAGGCTGGTGGATGCGGGTGTA 1994 29 96.6 33 ............................C CGGTCCAACACACGGGCAACATCGGACGGAGTC 2056 29 100.0 32 ............................. CGGAGTTCCGGTGCCGCGCCTGCGGCCACCAG 2117 29 100.0 32 ............................. AGGAGCGGTTGGCGCATGCGCTGCGAGCCCGT 2178 29 100.0 32 ............................. AAGGCCGCCGCATCTACGTGCGCTGCGGCTAC 2239 29 100.0 32 ............................. TCTCGATCAGCCACTGCGCCGCCTCACTGGTT 2300 29 100.0 32 ............................. GACGCGGACGCGCTCACCATGGCGTTAGGCCC 2361 29 100.0 33 ............................. GTGATGACCACGACGAACCAGCTCCATCCAGAC 2423 29 96.6 34 ............................A TGGGGGCGCCCCGCCGACGTTGGGCGGGGCGCGG 2486 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================== ================== 41 29 99.7 32 GAGAGCCCCACGCACGTGGGGATGGACCG # Left flank : ACCGCGGCGACGCCGTCGAGGGGTGGGTTGGGCATGTG # Right flank : GCCGCGCACGCTCCCTCGGCCGCCCCGGTGGGGGCGCAGGACCCCAGTGATAAGACTCCGATGGTGGCGGAGGGGATGTGGGTGGTCCCTTCGCCGTCCTCCGCGGTAATGGCGTTGGCGTCGCGGCGCACGGTACCCCGTCCTAGGTAGGCGAAGGGCCACCGGCCAGATGCCCGGGTGAGTTCACGCAGACTGGAGGCGCACCGTTTCCCGGTAGTGCTCCCCGGTCAGCCCACTGGGGCCAGGGTCATCAGGCCGCATCCGTAGGCTTTGGCGCGACCTATCCCCGAGATGAGCGCGCGACGTAGGGCGTCGGGGTCGGTGACTTCGAGCCGACCGTCGAAGGTCACAGTGACAAGAGAGACCGGACGGCCTTTTCGAGCTCCTTTAGAGAAGTTCCAGTCGCGACGGTTGTGGACGATCAGTTCGTGTTCGTCGCCTTCGGGAAGGCGACGCTTTTCCGCAGGTTTCTCCACTACCCGGAATCCCGCAGCGTCTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 33517-32877 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000018.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33516 29 100.0 32 ............................. TGGTCAAGACACACGAGTCCACGCGTAAGCTT 33455 29 100.0 32 ............................. TCCTCACGCAGCCGCTCGTTGGCCTCCAGTTC 33394 29 100.0 32 ............................. GAGGACGAGAACACCGTCCTCGCAGCCGCCGC 33333 29 100.0 33 ............................. TCACCTGCCACCAGTGCGGCGCCGTGGCCTACC 33271 29 100.0 32 ............................. CCCGACCGCTGATTCGTGAGGCCGCCGGTCGG 33210 29 100.0 32 ............................. GAGAACAGGTGAGCGAAACCGTTGGCAGCATC 33149 29 96.6 32 ............................A TCGCCAGTCCGGAGATAGATAGTCGCCTCAGT 33088 29 100.0 32 ............................. ACCCCTACTTCGACACCGACCCCGACGACTGG 33027 29 100.0 32 ............................. ACCGGGACCACCAGACTGCCCTGGAACTGCTG 32966 29 100.0 32 ............................. CCCGACCGCTGATTCGTGAGGCCGCCGGTCGG 32905 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCCGTTTCGGAAGAGGAGCCGCCGAGCTCGGGAGGGCCGTGGCAAGTCGTTGACTTGTGGGACCCGGTGGTCGGGGCTGTCTCCGGCGGTGTGAACTATGCCAATCACATCGCGGACAGCGAGGAGCCCTGATGGCCAAGCTCGTCATGATTGCAACTACAGCGGTTCCTAATCATGTTCGGGGTGCGTTGTCACGATGGATGATCGAGCCGGTCGCCGGAGTGTATGTAGGAACGATGAGTGCCCGAGTCCGCGACGAGCTGTGGTCCGCGGTGAGTGCTTCAGTGGGGGACGGGGCTGCCCTATGCGTTCACCCCGACGATAACGAGCAGGGTTTCACCGTTCGCACAGCGGGGGAGCGTCGTCGTGCGATTGTGGACTTCGACGGGCTTCAACTTGTTCAACTATCGGCGTCGGAAGGTGCGGAACAAGAGATGCCGCCGATCCCGGAAGGGTGGTAACGAGAAGATAACGCCTTGCAAAGTTGCAGGTAAGTAACT # Right flank : TGGGTGACCAGTCGCTGGGGCGTCCCTAAGTGCTGGTCTAATTTTGCTGTTGGACGAATTGCTAAGAAGGCGAAGGCTGGCATGCAGAAACACGATGAGATATGGATCCGCTATTTCAAGTCCCAAGGCTAACCCAATGCTGTGGGGCTGGCAGTAGGAATGGAGGGCGCCGCCTACGCCCTAAACGACGACTTGGTTGCAAAAGTTTGGAAAAAGCGATCGGGTGAAGAGCTGAGGCGGATTCAACTCTTCTATGAGGATCTCTCTGAAGCGCCACTGAGTTTTCATACACCGCGTATCAACGAGGTGTTGTACGTCAACGCTTGGCTCTCTGGTTGGTCGAATGCCTGCGGGAGAGTACAAGGAGGGAGAGGATACGCTGGCTCCTCTCTTTGATGCGAGGAACTCCCAAAGCTCCCAAGTGTCATAGCACCATGTTCAGGCTGGTGTGGACATGGATCCTGCGATGATCAGGCTTGGGGGGACCACAGAACAAGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 43413-43746 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000018.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43413 29 100.0 32 ............................. GATCCAGCGGATCCGGATGCACCGCCGCGGGT 43474 29 100.0 32 ............................. CCTCACCGAACGCCGCCCGGGTGATCGGGTCG 43535 29 100.0 32 ............................. CTGGTGGGCAGGCCGGTAGAAATCGGCGGTGG 43596 29 100.0 32 ............................. GGTTTTTGTGACCCACGTCACACAGAATAGTT 43657 29 100.0 32 ............................. CGCGTGGTCAGGATGGCTAGCGACCTAGATGA 43718 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GAGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TTTGTTCCCCACTGAGCTCCTCCCCGGGATAAGCGGAAAGGTCGATAGCGATCTGCTGTTGGAACTCTCGGGTTAGTTTCCCTATGTCATGCAACCCCGCCCAGAAAGCGATGCAGTGTCCCGCGTGCTCTTCGTCAGTCTCCATAGACGAAGCGATCGTGTCTCGCAGCCCGGGAGAGAGATATTCGTTCCACAACACCAATGCCGCGGCAGCAGCGTCGAGGGAATGGCACACCAAGGGGTAGGTCTTGCCGCGAAGGCCGCGTTCTTTCGCCCAGAACCTCAAGTCGAGCGGTGGGATACCGTGCTTGTCATCTGTAGAATCGTGTTCGGGCACGTTTCCTCCTGAGTTCTGCTGCCTTAGCACGCAGAACATAGCGTTCCAAGCAACTTGAGTGAGGCAATTCCACAAAATTGGATTAGAGTGCCCGCAGAGGGAAGCACGCCCACCAGACAGATAACGCGAAGATAACAGCCCACAAAACTGCAGGTCAACAACT # Right flank : AGGTAGAGACCTACTACTCCCACGCCGAGGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 38245-37973 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000024.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38244 28 100.0 33 ............................ GCTGCCCAGCCAGATTAAGTCTGCGCTGGGTAA 38183 28 100.0 33 ............................ CGCACAGAGCGTGCAGGCCGCAACACCCTGAGT 38122 28 96.4 33 ........T................... CCGTCGTCCTCGTGCTCGGGGAGCGCGCTTATA 38061 28 96.4 33 ..........A................. ATTCCGGATGAGGCCAGAGCGGCGGTTCTATTT 38000 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 GTGCTCCCCGCGCATGCGGGGATGGTCC # Left flank : ATCTCCGGTAAGAAGGGCGAGCGGATCGTCTACATCCGGACTCTGGTGTCGGGCAAGAAGGGCGCCGACGCTGGTCGTTCCATCGACACCGTGGCCAACACTGGCCAGTACCTGTAACAAGCGACTTGGTGGGCCTGCCGGACATCCCCGGCAGGCCCTTCTTTCTGCTTGGCGGCCGTCGGCTTACCAACAGGCGCGGAACCTGCTCTGTCCAGCTCTGTAAAGGGGAGTGGTGGGATCGCGTGGGCTCTAGTCGGTGTGCAGGACTGTCGTCGTGTCCGTAGGGGGACCTGTGGGATGTGCGGTGAGGGTTTTCTACGCCTGAGGAATGGCTTTGTGCTGAAGGCTTCTCACATCGGTGGTTTCATTGCTATGCGAGACGACTCTGTCCTGATGCTCCATGCCTGTTGGGCCAAATTTTCTTATTGGGGAGCTTGGTCTTCTTTTCGGAAGTGAATGAAATTGGTGCTGCACGCTGGTAAAGTTGCAGGTCGTTTAGG # Right flank : CGTCCTGCCCCCTACTCGACCGTCACTCTCCACTGGCCGCAGCACCATCTGCTCGCCCAGGCCCTACACCCTGAACCGGTCGTTGCCATGGCGTATTCACCGGCCCTCGTGCCTCGCCAAGCATGTAAAAAAGTTGAACTCCCGGGAAATTCAGGGGTTCAGCCCGGATTCGGGTTAGAGCAGGATCGGCCATTCCCGACCTTGATAGGTGAGCCGGGCGCCGTCAGGGTCGATGATGACCTGACATTGGTGCCGTGCTGGTTGGCCGAGTTGTTCCCATGTGCTGTGGGCGGCTTCTATCTCATCCCATAGGTGGCGCCGTCCGCCTTGGACGACACGCCCATCAGGGGTGAGATAGCACCAGGAGTCTTCGGTGAGCAGCCAGTGGCGCGGAGGCCCGTCGTCGTGGATGGTCCCCAAGGAGACGGCGTCAGGCACGACAAGGGCAGCAAACCACGCCCATGGTTCCCCGCTTGTGCCCGTGGTGAGGCTGGTGGTTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27865-25020 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000027.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 27864 29 96.6 32 .....T....................... AGGTCCCCCGGTACAGCCGGTGCGTGGTGTGG 27803 29 96.6 32 .....T....................... GATCTCCGTTTCGGAGGGTAGAGCTAGGGCAC 27742 29 100.0 32 ............................. CTAGAACAGTGTGTTCTGTGTCACACTATCGT 27681 29 100.0 31 ............................. ATCCGAACCGGGTTCTCCTGCGGCGGGACCA 27621 29 96.6 32 ............................T CCTGACCATCTGGTGCGAGGAGGGGAGGTGCG 27560 29 100.0 32 ............................. CTCGGCGACCAGGTCAACGAGGGCTGTCAGCT 27499 29 100.0 32 ............................. GACGAGGAGTGGAGGGAGCGTTCTCCGCGGAG 27438 29 100.0 32 ............................. TCGTCGAACTGGCAGACGAACTCTCGGACTGG 27377 29 100.0 32 ............................. CCGACCAGCGATTTCCGCTGCTTCCCGACCGT 27316 29 96.6 32 ..........T.................. GTTCTGGGCTACCGTCGTCACGATCAGGGGAA 27255 29 96.6 32 ............................C TCGGCCGCTAGCGCGGCATAGGTGGGCAGGCG 27194 29 100.0 32 ............................. GAGCCTGCACTAATGATCCGGGTTGTCATCAG 27133 29 100.0 33 ............................. ACTGTTGCCGCGGTCGAGCAGTTCCAGGCCGAC 27071 29 96.6 32 ............................T GCCACTGCGGCGGTCGAACGGCCACGCCGAAT 27010 29 100.0 33 ............................. CCTCCTCGGCGGTCGGCCGGTCTCGGGCGACCC 26948 29 96.6 33 .........G................... TGCCTGACCGCGCTTGGTCTTAACGCGGTCGAT 26886 29 100.0 32 ............................. GCACGCCCACCCGGTCGACCTCCGATCACCCA 26825 29 100.0 33 ............................. CACCCGCCCGGCTACACATCCCAATCCCCGCCG 26763 29 100.0 32 ............................. AAGACCCGGGCAGCGTCCGCGGCGTATGGATA 26702 29 100.0 32 ............................. GAGGGATGCTGAATGGCCACACTGGCAGAACT 26641 29 100.0 32 ............................. CATCGCTGAGGCGCACGAGCGTTCCGCCGACT 26580 29 100.0 32 ............................. TAGGAGCGGGCGTCGACGAGTTCGATGTCGTC 26519 29 100.0 32 ............................. CCGCACCCGTAGGCGGGGCTGCGGACGAGTTC 26458 29 100.0 32 ............................. AGCGCGACCACCAACGACGTCGACGAGAGCGC 26397 29 100.0 33 ............................. ACCTCATCGACCTGTCCAGGGCGACGTTAGACC 26335 29 100.0 32 ............................. GTGACACTTCACGGTCAGCTTCAGTGATGTAC 26274 29 100.0 32 ............................. TTCCCGGCCTGCAGCTTCCCGGATTAGCGGCC 26213 29 100.0 33 ............................. CGCCGCTAGGTTCATGCTCATCAACCCCACGCA 26151 29 100.0 32 ............................. GTCGACTTCGATGTAGCAGGGCTGGGGTTCGT 26090 29 100.0 33 ............................. GACGTGCCCCACGAGCCGCTGGGACGCGGATTC 26028 29 100.0 32 ............................. AACCCCGACCAGCTTGATGATTTCTTGGAGCT 25967 29 96.6 32 ............................C GCCCACGACGACGAGGAGCCCTGACTGTAGAT 25906 29 96.6 32 ............................A ACGGTGCCACCCCGCTGCGTCGCGGCCTGGGG 25845 29 100.0 32 ............................. GTGACACTTCACGGTCAGCTTCAGTGATGTAC 25784 29 100.0 32 ............................. TGCTCCTGCCACTGGCAGACCTGGACACACAG 25723 29 100.0 32 ............................. CCGACCAGCGATTTCCGCTGCTTCCCGACCGT 25662 29 100.0 32 ............................. GTTCTGGGCTACCGTCGTCACGATCAGGGGAA 25601 29 100.0 32 ............................. CCCTCAGACTCGTCTGGGGGCTTTCTCCGTTG 25540 29 100.0 32 ............................. AGGCAGGGACACCATCGTCAGCTCCTGATCTG 25479 29 100.0 32 ............................. AAGGGCCCTGCCGCGGGGGCGTCCGCGACAGG 25418 29 100.0 33 ............................. CACAGAGCCCGCCGCACCAGACGGCGGGCACCG 25356 29 100.0 32 ............................. GAGGGATGCTGAATGGCCACACTGGCAGAACT 25295 29 100.0 33 ............................. GCCACACTCTCCAGTCGGAACGCGGCTGCCTTC 25233 29 100.0 31 ............................. CCTCCAGCTCCGTGGTGTACGTCATCGATGA 25173 29 100.0 31 ............................. GGAGAAAACCCCCTACCCCCCTCCACCGCCG 25113 29 100.0 36 ............................. GTTTCGATAATGGAGGGATAGGACGATGATCAGGAG 25048 29 93.1 0 .......................A..T.. | ========== ====== ====== ====== ============================= ==================================== ================== 47 29 99.2 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TGCTGTTCCCTGCCGTCTGTGAGGTGAGAAGGGGGAGAAAGGGACAGCAACCGTGACAGCAACGGCCACGGCTTGTCCCCGGCCGAAAACGGGCGTCTTTTCGTATTAGCCCAGGTTAGCCATGGTTCGAACTAGTGATGCCTTTGCCTTACAAGCGGGCGGTCGGAGGTTCGAGTCCTCTCGCGCCCACGTCGATACGCACTCGGAGACGCCCGGGAGCCGGTACGGCCCCGGGCGTCTTGCTGTATTGAGGCCAGCTACAGCACTTCCCCTGAGCCCCGTGGGCGTGGTGCCATCAACCGTCATCCGTCGCGCAAGAAGAAAGCTCGTCATGGCCACGCAGGGACCGCCAGGCATTCCGCGTATGGCGACGGTGATTAATTGGGTTCTAGTTCTGACTCAGATTTCTGGAAAACGGTCTAGAGTGTCTTGTGCGACGAAGTTGTCCACGCCTTTGGTAACGAGGAGATAACGCCTCGCAAAGTTGCAGGTCAGCTTCT # Right flank : GACACAACCACTGATGTCCCTGGCGCCTTCTCGAAAGTTGTGGGAATGCAGCGGTGCCTGGACTGCTCGGGCATTGAGGAGCGCTATCGGTTACTTAGCGCTGCCTCAGGCCAGCACGCGTGGGCCCTTGGGCTGTGCATCGAACGAGAAACTCTGACAGCAACGGCACCGCTGAGTGCCCGCTGCTGTCAGGGCTGCTGGTGCTGCGGGTCACGTGGGCTGCCACGCTTGGCTGGCCTGTTCGATGTCTTCTGCGGCTACTCGGCGCAGCTTGTGGGCGAGATCGGACAGCGCCCGCGCCACGGCTAGTTCCTCCCCAATCTCCGGGATATCGGCGTCGGTGGGATGCTTGCGTGCTTCTCCGTGGCCGCGCAGGTTCCACTTGGTGGACGGCAGTTGCGCTTCGGCGAGGGTGCGCACGGAGCCGTTCTCGTGCACCTCCGACACTGCGACGTCGATCTGTATCCGTTTCAGGGACTGTCCCGGCTGCGGTTGACGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 15480-17586 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000004.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15480 28 100.0 33 ............................ CGGTACGGCGCTGCGGCGGTGCTGCGGGCCGCA 15541 28 100.0 34 ............................ AGCGGGGGGTTTGACCCCCCGCTCAAACCGCGGT 15603 28 100.0 33 ............................ TTGGGGAAAACCGCGGTACCGGGTTGTGCGCTG 15664 28 100.0 33 ............................ GGACCACCACACCGGTCTGAAGCTGCTGGAGGT 15725 28 100.0 33 ............................ GGCGTGGTCCTGCTATCCGGGACAGGCGACCAT 15786 28 100.0 33 ............................ GATCACAATCTCGCCGTCGACATCGACGGCGAG 15847 28 100.0 33 ............................ GGGAACCGGCCGGGAACAGGTGGTCGCCCCGAC 15908 28 100.0 33 ............................ GAGGTTTTCCACGGCCCGCTTGGGGACATCGTC 15969 28 100.0 33 ............................ GCGGCCCACTCTGACAGCTCCTGGGAGTCGATA 16030 28 100.0 33 ............................ GCGGGCGACCGGTTTCCCACAGCCCCGGTCGCC 16091 28 100.0 33 ............................ ACCCTCGGCGTGACAGCCACCCCGGGGGTGTGC 16152 28 100.0 33 ............................ GGATTGGCTCCCACTGGCCCTGGGCGACTTCCT 16213 28 100.0 33 ............................ CTGGGCGGAGATGAACCGGGCCCGCTCCAGCCC 16274 28 100.0 33 ............................ GGCATGGACCAGGTGCGCATGTGGACGATCGTG 16335 28 100.0 33 ............................ GACGACGCTGCTGCACGGGTTGACCGCGACGAT 16396 28 100.0 33 ............................ CTGGGCGGAGATGAACCGGGCCCGCTCCAGCCC 16457 28 100.0 33 ............................ GTGGCGGGGCTGCATCACCTGGGCGTTGACGTC 16518 28 100.0 33 ............................ GCTGAGGTCCAGGCGCAGGGTAGCGGTTGAGGT 16579 28 100.0 33 ............................ AACGTGCAGCAGGCCCTCCTCCTGGCGGGGGGC 16640 28 100.0 34 ............................ TTTCGCGCCAGGTGGGCATAGGCCGGTCCCACAC 16702 28 100.0 34 ............................ GTACCGGCGCACCGTCAAGTACGTGCAGACCTAC 16764 28 100.0 34 ............................ GTACCGGCGCACCGTCAAGTACGTGCAGACCTAC 16826 28 100.0 33 ............................ AACATGGACCGCGTCCCAGTGGGCGATAGGACG 16887 28 100.0 33 ............................ GCGCGTCATGGGCGCGGGATACGCACCGGTGGC 16948 28 100.0 34 ............................ GGAGGGCTTTATGGGTGATGTCCCGTGTCCGGCT 17010 28 100.0 33 ............................ GGTGACGCACGTATCCGGACAGGCTGCGTTTAG 17071 28 100.0 33 ............................ GTTACGAAACTGATACTCTATGAATCCCGGATT 17132 28 100.0 33 ............................ CTGATCTGCCGCCTAATCGTCTCCTCTGTAGGA 17193 28 100.0 33 ............................ AGAAGCACCCGGCCGGCGTCAACGCTCCCCTGG 17254 28 100.0 33 ............................ GCGGAGCTGTACAAGGCGCAGATGCGCAAAAAC 17315 28 100.0 33 ............................ GTCCACAGCAAAGGAAAAGGCCGGGGTGCGGCT 17376 28 100.0 33 ............................ GCACCTGCGGATGTGGACGTGTCGGACGAGCAG 17437 28 100.0 33 ............................ GGGTGCGCACAAGGTGCCAGGCCAGGGCGGCGC 17498 28 100.0 33 ............................ GGGTGCGCACAAGGTGCCAGGCCAGGGCGGCGC 17559 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 35 28 99.9 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : GAGATCGCCTCCCTCGCCCTCTTCCTCGCCAGCGACGAAGCCGCCTGGATCACCGGGGGCATCTACCCCGTTGACGGCGGACGCGGCGCGGTAGGGACCATTCCCACCGACTGACCCTCGTGGCAGCCGCCCCAACTGCTTCCCCATCGTCAATCCGAAGGCGGCTGTTGAGGACGGTATCGATCCGCTATTCAGCGCGCAGCGGACTAACGGGTGCGGCAGGCCCTGCCGGTCGTTGCCGCGCGCTACCAACGCACTAAGGGAAGCGCGGGATGCTCCTCCCCCGCTTCCCGCCACTGATATTCAACGGCTTGAAGATAGCCCGTGAATCCCCACCCCAGCCAACGGACAACAGCCATTCTTAAATACACACAAAAAGGACAAATCAGTCGCGAGAGAGCGCATCCACTGAAAACGATCTAGAGTGATCTGTATGATGAAGCCGCCTGCAAGATTAATAACGAGGAGATAACGCTCCACAAAATTGCAGGTCAGCTTCT # Right flank : CGTCAGTGAACTGTGTCATAGAGACGACCGGGCCGCTGTCCCCTAGCCGGAACTATTGGCGCTCTGCACTAAGACGACAGTGCATAGCGGAGCACACACGAATCGCCGGCATAGTTCGGGAACGCTGTCCACTCTTCCCGTAGGTAATGCCGTTCCCGGAATCCGCGCTACGAGAAGAGCGGTCTTTGCTTCTTCGCGCCCCAGACCGACTTTGCGAAGTGATTCCTGGTCTTGTCAGCTCACCCCAGTATTCCTGCCTCGATCCTTGAGCTGCGTCACACCCACTTTTCGTGGAGGGCGTAGAGGCGACTACCTCTCAGGCAGCTTTCGGACCTTTCGGCTCCTGCGGTTTCTCCCCCGCTGCCAGGAGCAGACAGGCCTGGACGCGTTCACCCCGTGGCTGCTTGGTCATGGATGGTGACGGTGTTGTGGGCTGCTACTGGTCTGCCGTCGAGCAACGGAGCAAGGAAAGCCATCGAAGCGCGCAGGTCCTCTACCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 38567-37544 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000052.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 38566 31 100.0 37 ............................... ATGATCTCCACCTTGATGTTCTTGGTGGAGGAGACGA 38498 31 100.0 34 ............................... TACCCGGATAGCACAACGCGACCAGAAAACCGGT 38433 31 100.0 36 ............................... GTCACCGCCAGCGCGAGAGAGGGCCGCTGGTCATCA 38366 31 100.0 33 ............................... GCGAGAGCCAGCGGGTGGCAACGAGGGCAGCGG 38302 31 100.0 36 ............................... AGTGATTGGCCGCGGCCCTCTAGTCGCCACGGGCCG 38235 31 100.0 38 ............................... ATCGTCCGCGGTCCTGCTCCGGACGCTGAGGCCGCAGA 38166 31 100.0 36 ............................... CGCTGGCCTGCGCATGAGGACATGCTGACTCTCAAG 38099 31 100.0 35 ............................... CGACTAGTGGCCATGACTGAACGTCTGCGACACGT 38033 31 100.0 37 ............................... AGGTCGTAGGCGTCGCAGGAGCCGCTCAGGTCGCCGC 37965 31 100.0 34 ............................... TTGTTCACACGCTCCTCCTAACGGTAGGGAACGT 37900 31 100.0 35 ............................... GTGAGGCCTACGCGGACTATCTCCGCCGCACCCGG 37834 31 100.0 34 ............................... CAGATGCGGCCGAAGGCTTCCCACATGACTCGTG 37769 31 100.0 36 ............................... CCGAGTGGTATGCCGCGCATCCGCGGCCCGAACCCG 37702 31 100.0 30 ............................... GCGGAGGAGGGGGCCCGGTTGATGTGCCAG 37641 31 100.0 36 ............................... ATGTCGACGACGATGATGCCGGAGGCTGCCCCGGTG 37574 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 16 31 100.0 35 GTTCCTCATCGCCCCTAAGAGGGGCAGCAAC # Left flank : CTTTGTGTTTGGCTGGGGGTTAGGCGGCGAGGCCGAGCG # Right flank : GCGACTGCCTTGCGCAGTTTCTTCAGCGCGGATGCTGTTCGCGGTCCAGGTGGAGCGCGCCGGATATGTGACCCGTGAGGTCGCTACGGAGGAGGGGCCGCGGACCGCGGTCGACTCTCTCGTCGTGGTGCACCGCTCTGCCTGACGGGAACAGACACACCGAACTGAACTGTCTTGAGGTGTGCTCTCCTCAGTAGAGAGGGGCCTGTCGAGGACTCGGGCACCAGAGTGTTTCCCTGCCAGTTCCGAGGGCCGGGACAGAAAACCGGGCTGACAGAGTGCCAGACTGGGGAGGAGCAGGCGCGGGGTTATTCCGTGGCGATGGGCCAGATACGGATAGTGCCGTCTTCGCTTGCGCTGGCTAGCGTGGTCCCTTCCGGGTGGAAGGCTACGGAGTGGACGGGCTCGGTGTGCCCTTCCAGGGTTGTGTGTTCTTCCTGGGCGGCGACATCCCACAGGCGGATGGTGCGGTCGTCGCTGCCGCTGGCGAGGAGGGCGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTAAGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 98982-100419 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000005.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98982 29 100.0 32 ............................. AGTACGGCAAAGAAGCGGCCGAGATTGCCGGC 99043 29 100.0 33 ............................. CTGCTGGAGGTCGCCGCCGAGGTTCGCCGCGGC 99105 29 100.0 32 ............................. CAGATGCTGAGACCTCCAAAATCCGGCTACGA 99166 29 100.0 33 ............................. TCTCTATCCGGTGCCGCAGGTCAGCGGCGATCC 99228 29 100.0 32 ............................. CGGGATTCTCCGGATGGGCAGGTCAACGGCAC 99289 29 100.0 32 ............................. GCGCTAGCGCCACCTCTAGAGGGTAGGGAAGC 99350 29 100.0 32 ............................. GATGGTGCTGTTACGTAGGGTGACCTTGTAGG 99411 29 100.0 32 ............................. CGCTCGACGACGACGAGGGGTGAGTGACGCCA 99472 29 100.0 32 ............................. CCCATCGACTTGGATGCGCCCATCGTCAGCGT 99533 29 100.0 32 ............................. AGGCCACGGTTTTGGAGGGGATGCCGGACTCG 99594 29 100.0 32 ............................. ATCATCAGAATCATTTGGATCACCGTGACGAT 99655 29 100.0 32 ............................. CGGCCTAGGACTGCAGGTTGATCTGCCGACCC 99716 29 100.0 32 ............................. CCTCACCGAACGCAGCGCTTTGACGGCAAGCT 99777 29 100.0 32 ............................. ACCTCGACGACCCCGTGCAGGGCGACATCGAG 99838 29 100.0 33 ............................. TTCCTGAAGGATCTCTGCCGTGCGCTGTTTATC 99900 29 100.0 32 ............................. CAGCAGGCCATTACCCCGCATGAGCGGCGGAC 99961 29 100.0 32 ............................. CGTTAGCGGAAATGTTCGATTCCGCCGCAGAC 100022 29 100.0 32 ............................. GAGAACTTGAAATGACTGCTCGGCTCGGGCCC 100083 29 100.0 33 ............................. CTCTGGTCGGCGCTGGCCACGGTGCGGCCGTGC 100145 29 100.0 32 ............................. ATCATGTCTACGGCCAGCGGCCCGGCCAGGGG 100206 29 96.6 33 ............................A GCGGCCTGAAAACACAAACGCCCCCGCCCGGCC 100268 29 100.0 33 ............................. GTCACCGGAGTCTCACCGTGGGATCCCCCAGTC 100330 29 100.0 32 ............................. ATTTCATCAAAAATGATGATCTAAGGTCCCAC 100391 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : AAACAAGAAATGACTTCACCTCAAGGAGCCATTGCCTATATCCCCCCCACATGACGTGGCCGACGGCTCTCTTCGAGTTCGCTGACGACGCTCGTACCTGCCCCATGGCAAGGAAGACAGTCGTCGGCGCCGTCAATCCGCACTGGCGGTACGTACCGCGGATTACTGCGAGTGGTATGGCAGTGTGGCTGTCGGCCCTCCCCCTCATGGACACGCGTCTGCTTGGAGCGGATCGCGCGGGGAAGTCCTTGCGGGCTGTGGAAGAAGTTCGAACAGGCTCATGCCTGGTGGGTCCAGCATGGCTGTCCAGAAGTGTCGGGGTTCGGGTTGACGGTGGGGCCGCGGAGTCATGTGGTGTGGCCCGGTTATTCAGGCGGCCCTCATGTCACCATTGAGGGGACGATGCTCGGGAAAACGGTCTAGAGTGTTGTGTGCAGCGAAGCTGCCCACAATCCAGATAACGAGGAGATAACGCCTCGCAAAATTGCAGGTCATCTTCG # Right flank : ACTTCGTCTTCCGGGAACCAGCGGCCCGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 20768-20495 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000054.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20767 28 100.0 33 ............................ GGTCGCCGAATGGACGATCCCCGTGCCCACGGA 20706 28 100.0 33 ............................ CCCGGCTCGACACCCCGAGCCGTTTCCTAGCGC 20645 28 100.0 33 ............................ TGCCGCACAGACCTGTCGGAGACGCCGAAGCGG 20584 28 92.9 33 A......................A.... CGCGTTGATCACGCGTTTTGCCACATCCAGCGG 20523 28 96.4 0 ....C....................... | C [20514] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 33 GTGCTCCCCGCGCATGCGGGGATGGTCC # Left flank : CGATCACTTTGGAAGTGCCGGAGGACGAACTCAACGCCCGCCGGGAGCGTCTCCTCAAGGAACTGGGTGGATTCCGGCCGCGGAACCGGCAGCGCCCGGTGAGCGCGGCGCTCCGCGCCTACGCGGCGATGGCCACTTCGGCTTCTACGGGAGCCGCCCGAGACGTCAGCCAGGTGGAGCGCACGCATCTCCACTCGTAATGCGGAGGCCGCGGGGTTCGATTCCCGCAGGCGGCTCGCAGTGCTGGGGGCCTCTCCCTAGAGCCGGGAGGGGCCCTGTACCACACTGCGCACGCCCCTCCCCTAGCCCTCGCATGCCACTGGCCGCCTAGGCGAGGCCGACGCCACTATTCCTGGTCACACGCCACGGGTACAGCCGTAGAGGGGCATCTCCGTGCCTTTGATTCACCTCTCCACCCTGGGCCATTTAGGCGTTGCTCCCGATTGTGAGAAGTGAATGAAATAGGCTTACCGGACTGGTAAAGTTGCAGGTCGTTTAGT # Right flank : TGACACGGCTACGGGGAGGCCTGCTCCAGCAGACCTCCCCGCGTAAGGTTCAGGATCAGCCGCCGCAGCAGCCACCGCCGCAGCAGCCGCCGCCGGCTGACGAAGGGGCTTGCGCGAGACCGCTCACCCCAATCGTGGACAGCAGTTTGACCGTGTCGTCGTGCCCATTCGGGCACTCTGCCGGGGCGTTAGCCTCGGCCATGGGCCGGGACAGTTCAAAGGTTTCACCGCAGGCACGGCAACGGAACTCGTAACGAGGCATGACATCAGCATAGGGTCGGGTCGCGCCGCAGTTCCGCACACTTCCCCCACCCCAGAGGCACGCGCCTGGTGGTGTCACTGGTGGATCGTCTGGTCCCCGGGACCGAGACGAACCCCCGGCCCCGGGATGTCCTCCTCAGACTTTCACCCTCGCCATATAGGGGGCCCAAAGGGGGTCAGTGTGGTGGTCACCGTTGATGAGGCGCCAATGAATCCCCCGCGGAACTGTGGGGGTGACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-794 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000006.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 34 28 100.0 33 ............................ GCATGTCCAACGAGGCCCATACCGGAGGCGACG 95 28 100.0 33 ............................ TCCCGGCCGGGCGCAGCCTACGCCGCCGTGGAG 156 28 100.0 34 ............................ GCCGAGTCACAGGTGGTGGCAGCACGCCGCCACC 218 28 100.0 33 ............................ GCCATGCAGCGTGCCGTAGGTGGTGATGACAAC 279 28 100.0 33 ............................ GCCCACAATGTCCCTGATTCGGGTTGTCATCAC 340 28 100.0 33 ............................ GGTCATCCCGATCCCGGTCGGCCTCGGCTATCG 401 28 100.0 33 ............................ GGTCACGGTCGCCCGCGCTTCATCAGGGCAGGT 462 28 100.0 33 ............................ GTTGGCGCGCGCGGTGACGGCGCGCTCTAGGGC 523 28 100.0 33 ............................ TCAGATCCGACCACGCCGGCGCCATGTGCGCGA 584 28 100.0 33 ............................ GACGACGCGGCCGTCGTCGAATACCGGCGGCTC 645 28 89.3 33 A..CT....................... GAGGACAGCAACGTGGAGCGCGAGATCGTCTCC 706 28 89.3 33 A..CT....................... GCGGGGCGTTTCTTTTCTCGAACGGGTCCATCC 767 28 71.4 0 A..CT....G.A.........C.A.G.. | ========== ====== ====== ====== ============================ ================================== ================== 13 28 96.2 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : AATGGCGGCGACGCAGACTGCCAGTGCTGGTAGG # Right flank : CGATTTGTTTCGTTCTGTGTGAGCGAAGGTGGGAGGTAATGCCTGGGGTTTGAAGACGGATGTTTTCTCTGCGGACGGCTTTAGCGCTGGTCGTTTCCTGGGCAGCTGGTTTTCGCGGGCGAGGCGGGCGCCTACACTCCGCGGAGCCAGCGTCCGGCGAGCGTGCCGTCCGATTCCACCAGCAGTCTGGGAACAAACGTCCGTTCGAGCGGCTTACCGGCAAGTAGTCTCAGCCGGTCGCCAGCCACGATGCGGGGTGCGAGCGTCAGGCACAGCTCGTCCACCAGGTCGGCGTCGACCAGGTCGTGCATCAGGTGCGGTCCGCCTTCGCACAAGACCCGGCGCAGGCCCTGCTGGGCGAGCGCGTCCAGTGCGGCACGGAGGTCGACGCGGTCCTCTCCGAGCACGAGGACCCGGTCGTCGCCCAGCGCCTGGCGGACCTCGTCCAGGGCAGCGGAGTCCGCGGCACGGCAGGTGAGCAGCATGACTTCGCCGGCGTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 5873-5645 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000065.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 5872 30 100.0 36 .............................. AGTGAGTCCGTGCTCCCGGAACGTCGCAGCGAGCTC 5806 30 100.0 36 .............................. ACATACGACTGCCAGTACGCCACATCAGCGAAAAAC 5740 30 100.0 36 .............................. CTGATGCTGCGTCGGCCCCGCTGTCCCTGCCCAGGA 5674 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 TTCCTCATCGCCCCTAAGAGGGGCAGCAAC # Left flank : CCAGGACCGCCGGTGGCATAGACGCCTTTCTGGCGCCGAGTCAAGGGAAAAACCGGGGCACTGTGACCAAAAGGGACCATTCCGTATGGAGGCATTCCCTCGGAATGGAGGCGTGCTCCTACCTCGGGAGCACCTCGCTCCAAAAGACCATAGATCAAGCTCCGTCCAGGCTTGAGAACCTGCTCCCACGGAAGCGACAAAGCTGATGTGTGTATCTTCAGCCGCAATCGCATCCCATACGCCTCCTCTTTGGAGGGTACCTACTGCAGACATCCCGTCCAAAGATAGAGGCAACCTATGACAGTCCACAGATTCATAGGGAAAGTTCCTCAAATTTGCTGAAATCCCGTATGTTGGAGGCGTCGGCCTCTCCCGAGAGGAGCCAGAGATTCACCCTTTTTCAGCGACACGCCGGGGCCTGATGCACTACCGGAGGTTCGCTGAAAAAGCTGCTGAATCCAGTTCTCTGGGTTGGGTGTGACCTGCGACTTTACTCTCGG # Right flank : GAGAGCGACGCTGATTGCAGGCCTGGGAAGACCGCCGTGGCGGGGCCTGGACTGCTTTGGAACAGGCCGGATGGAAGGGTGAACTCGTCCTAGACGACGACGGGGTCCGGAGTTAAGAACTCCGGACCCCGTCCTGCCTCTCAGGCGAAGCGGAGGATAAGGGATTCGAACCCTTGAGGGGTTGCCCCCAACACGCTTTCCAAGCGTGCGCCCTAGGCCACTAGGCGAATCCTCCGCGGACCACTCTACATGGAAACGGGCACTATGCCGAACTGATATCCCGCTCCTGCGCGAAACCGCTGATCGGCGCGGGTGCAAGACCCGGTTCGCGAAACCGGGAGGGGGCCTATAGACTCTGGGTCAGGCCCCTCGTGCGGCGTCATCCTACGAACCTCCCCAGGGCCGGAAGGCAGCAAGGATAAGTAGGCTCTGACGGGTGCGCGGGGGGTCCTTCGCGTTTGAGCCACCGATCACGCGGAACAGCCCGGACTGTCACCGGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTCATCGCCCCTAAGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 14227-16731 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000065.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 14227 31 100.0 36 ............................... TAGAGGGGGACCACCAGCCGCGGGAAAGTACGGTAT 14294 31 100.0 36 ............................... AATAAACGCCGTGGGACTCGGTGGGAGTCCGAGTTC 14361 31 100.0 36 ............................... CCGAACTGCGCAAAATCCTGAACGCGCGTAGCGTGC 14428 31 100.0 35 ............................... GAGACTGGGAGACTTGCTTGCAAGAGGCTGCCGTA 14494 31 100.0 36 ............................... GACGACCCAGCGTGTCCGTGCCCACAGGAATCCGGA 14561 31 100.0 36 ............................... CGTTCGGCAGCCTCCAGCTCGGCGAGGTCCTGAGCG 14628 31 100.0 36 ............................... ACTGTCACCGCCTGCAGACCTGGACGTAGACCAGGG 14695 31 100.0 35 ............................... TGGTTTTGGGTGGTGGGGTTGACCCGCGCCCGAGC 14761 31 100.0 36 ............................... GCCGAGTAACCGGCAGCGGCCCGCTCATCGCCACGG 14828 31 100.0 36 ............................... TCATTGATCCCCGTGAGCTGACCGTTGAACCGGCGC 14895 31 100.0 36 ............................... TAGGCGGGGTCGTCCGTGACCTCCACCTCCGTGATC 14962 31 100.0 36 ............................... CCTGTAAGAATTCTTGGGGACAGTTTCTCCGCGGTG 15029 31 100.0 36 ............................... TGGCCGTGCCACGGTAATAATCAGACACCGGCTCAT 15096 31 100.0 36 ............................... ACCACTAGCCTGCTCCCCGGGGGGTACGGGGGACGT 15163 31 100.0 37 ............................... ATGAGAGATCCAGGGCTAACAGGCTGTGTAGCGTCCA 15231 31 100.0 37 ............................... ATGGCGATGGCCAGGCCATTGATTACAAGGCCGAGTA 15299 31 100.0 36 ............................... CTGACAGACGCCGAGGAAGTCGAGGCCGAACCGGGG 15366 31 100.0 36 ............................... TGCTCTCGGCGACGTCGTTGGCCGCGCTCTCGGCGA 15433 31 100.0 35 ............................... TGGCAGCCATAAGCCGGGGCGAACCGGTCTACATC 15499 31 100.0 36 ............................... ATCTGATCCGGTCCGGTGAGCTCACCGAGACCTCTT 15566 31 100.0 36 ............................... TCGCCACCGTCATCCTCATTCGCGCTCGACTCCGCA 15633 31 100.0 36 ............................... ACATGTTCGAGGATTTCCCGTTTGGGTTTGATCCTC 15700 31 100.0 36 ............................... CCCTCAGCGGGCGCTGGTCCGTGCAGTGTCCCGTAG 15767 31 100.0 35 ............................... AGGCTGCAGATCTAAGCAACTATGTGAATCTCATC 15833 31 100.0 36 ............................... AACTCGCGGGTGCGGGCTGTTGACCTCCCTGGGCAG 15900 31 100.0 36 ............................... TCAAGATCGCCACCCACGCTACGGAGACGAGCCCGG 15967 31 100.0 37 ............................... GGTGGTCATGGCCCGCACCCGCGTACCGGGTTGGGCT 16035 31 100.0 34 ............................... AAAACATACGAATGCGGACAAACTCCCCAGGAGT 16100 31 100.0 36 ............................... AGGTCAATAGGGACCGTGCTGCTGGTCCTGGTTGTG 16167 31 100.0 36 ............................... ACCTGGTCGCGCGCTTGACCACGGGGCAACCGTGGC 16234 31 100.0 36 ............................... CCGTGGTTGGTGATGTCCGCGCGGATGACGTCGAGG 16301 31 100.0 33 ............................... GTGGCCTCGGCCAGCCAGCGCAGCCAGCGGCTG 16365 31 100.0 37 ............................... AGGAAGTGTCCGATCTGGCGCGCCACCCGAAACAATG 16433 31 100.0 36 ............................... GTCCGATCCGACGGGCGATCGGTTGGGCTGCCACTA 16500 31 100.0 37 ............................... ACGATCGTGGCAGCAGGTGGCGTGCTGCCCTCGTGCT 16568 31 100.0 36 ............................... GTAGGTGCGGACGGTGTTGTAGGAGACTCCCCAGTG 16635 31 100.0 35 ............................... ATGATGCGTTCGGCCCCTGCCAGCGCTACGAGCAC 16701 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 38 31 100.0 36 GTTCCTCATCGCCCCTAAGAGGGGCAGCAAC # Left flank : CAAACGCCTTGTTGTCTACGACGAGCTCATCTACCTTGAGGCGCTCCGGCTCACCCGAACCTGCCTCGAAGGCGCTCCTTACAAACCTTTTCGTATCTGGTGGTGACCACGAATGCATGTCATTGTTGTCTACGACACCGCCCAGGAGCGCAACCCGAAGATTCTGCGGACCTGTCGCCGCTACCTGCACCACGTGCAGCGGAGTGTCTTTGAGGGGCAGCTCTCCCCAGCCCAGTTGCGTCGCTTCCAAAGCGATGTGAGCAACTTCCTCGACCACGGGTATGACCATGTCATCATTTACACGCTTCCTCCTGGCGCGCAGCTTCAACGCCACACCATCGGAGTAGACAGACCTGGCCCAAGTGACATCCTGTGAATCATTGCCACGAACCCCGTTTTTCAGCGACACGCCGGGGTCTGATGCACTACCGGAGGTTCGCTGAAAAAAGCTGCCGAATCCAATCCTCCGTGTTGGGTGTGACCAGCGACTTTACTCTCGG # Right flank : GCGTTTCCGACAGGTCGGTGAGGCACTGGACAGCGTTCCTCATCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTAAGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 13268-12750 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000008.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 13267 30 96.7 31 .............................T AGGACCGGGCGGGTACTCGACAGGGGCTGGG 13206 30 100.0 31 .............................. CACCTGCAACCGTCCGGCCGGGCACACCACC 13145 30 96.7 31 .............................T CCGGTCAGGTGTGTCAGTGCCTCACGCTCAC 13084 30 100.0 31 .............................. ATCTCTACACCGGCACGATCTGGTGTGGCCA 13023 30 100.0 31 .............................. ACGTAGTCGAGCGCGAGCGCCTCGGCGGCGT 12962 30 96.7 31 .............................T CCCTGCAGGTCCCTGCATCTAGCCCCGGTTC 12901 30 100.0 31 .............................. ATCTCGCCGGGCTTGTACTTGCCTCGCTTGA 12840 30 100.0 31 .............................. ATCTCGCCGGGCTTGTACTTGCCTCGCTTGA 12779 30 90.0 0 ..............G........A.....A | ========== ====== ====== ====== ============================== =============================== ================== 9 30 97.8 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : TCCGCCTTGGTTGCGGTGGAGTCGCAGCGCGAGAT # Right flank : CATGCCTCTAGGTACGAAGGTTCTCGTGGGGTTGCTAGCTGCAGCGCAATAGTGTTCTTGTTGTTCGTGGCTGGGTGCGCTGCCGCTATCGTCTCTCTACCTGATAATCCCGACCGGGGACAATGAGAGCTCGACCGAAACGCCTACTCCGCCAACTGAGTCACCGAGTCCGGAACCCAGTTGAGGAACCCAAAACGGGAGATGATCCTGAAGAGATCGGTTTGAAGAACTTGGGTTTCCTCTAAATCCTGAAAGTGTGGTGCACAGTGATTATCTAAATGCTGTGCGCGAGATTGTGCGGGGTTGCGGCCCTCGATGCAGATTCGATTGTGGCCTGTCGCCTAGATGTGTGTTGGATTTTTCTAGACGAAGGAGAGAGAGAATCTTGGCGCTATATTGAACAGGTCTAGCTGCACGAAGACTTCAATTACGGGGCCATGCTGACTTTGCTGGAGGAAGTAGAGCAACTGCTAGATGTAGTGCATGAGCATCTCTATCCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1347-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000009.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1346 30 100.0 31 .............................. TGCTCCAGGTCGCCGCCCGGCGCGACGCCGT 1285 30 100.0 31 .............................. TAGCCATTTTGCCAACCTTTCGGTCCACTCC 1224 30 96.7 31 .............................C CGCCGCCCGCGGAGACACCGGCACAGCGGCG 1163 30 100.0 31 .............................. TTCGCGCGCCTGATCTCCGCCGTGCCCTGGC 1102 30 100.0 32 .............................. TTCGCGCGCCTGATCTCCGCCGTGCCCTGGCC 1040 30 96.7 31 .............................C GGACCGGCGGCACCGCCACCGGCGGCGTCCT 979 30 100.0 31 .............................. CGTTTACGGACCCTGCCCATCTGCGCGCCCG 918 30 100.0 31 .............................. CGGGGGCGCGTCGAGAACCGCACTCAGGAGG 857 30 100.0 31 .............................. GACCCTCATACTGGCGGTTAGAAACCGCACC 796 30 96.7 31 .............................C CGAGCGCCGTGACGACCACCGGCCACGCCTG 735 30 96.7 31 .............................G CCGCCTAGCGTGGGGGGTATGGCCGCAGATG 674 30 96.7 31 .............................G CCGGGAGTCGCAGCTCCCGGCCAAACCACGG 613 30 96.7 31 .............................C CCGGGGATACCAGCGATGTCGCACCGGTCCT 552 30 96.7 32 .............................A CCGCTACCAGCGCAGTCGAGTCATGCGCGAAC 490 30 96.7 31 ............................T. CCGCTACCACTGAGGCCGAGATCATGGAAAT 429 30 93.3 31 ............................TG CGACCCTTCCTCCACCGGGAATGACCGCGAT 368 30 96.7 31 .............................C GCGCAGAACCACGCTGTGTCACCGGCATCGG 307 30 96.7 28 .............................C TCTGCGCCTATCTGCTGCTGTAGTGGGT 249 30 96.7 31 .............................C GCGTAACGCTGGGCTGCCCTACGGTGTGGCC 188 30 96.7 31 .............................G AGCGCGTAGACACGGAGCGCGGCATCGGACA 127 30 96.7 31 .............................G TGGTGGTTGACCATGGGGAACACCCCATGAT 66 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ================================ ================== 22 30 97.6 31 GTGCTCCCCACGCACGTGGGGATGGTCCGT # Left flank : AGCGGCAATCCGGGCGGGGCGCCGTGTTGCGTCAGCAACTTCCCGTGTCCGTTCCAGCAGCATGGCGACCTCCCATGTCGACTAGCCTTCCCTCTACCCGGCGGCCACGCTGAAACACGGTCGTCCCAGGGCTGGCCTTTCGGAGGCGAGACCAGGACGTCTGCGGACAGCAGACAGTCCCAGGAGCATTGCGAGGATGCCAACGTCGCTTTCCCCGCCAGTGATCTGGCGGCAGGCAGAACGACGCGCTTCCACCGGACAGTCGGTTGCCGTCGCCGCAGGCCGATGGGTTTGCACCCCGCCTCAACCTAGAAAGACTGTCCCGGTCCTGCTGTGATGAATCCCAGCGGAGGGCAAGGCCCGGCCAGTGTCAGGCAATTGGCTGCCCAGAGCAGAGATTCCGGCTAAATTGACCTATGCGAGCGGTGGGCCGAACCTCCTGATACCCAGAAGATTGATAACGAGAAGATAACGCCCTCTAAAACTGCAGGTCATCTTCT # Right flank : ATCCAGCTGGGCAGTGAGGCGCGCTTGTGCGGGTGCT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9746-8070 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWB01000069.1 Thermobifida fusca NBRC 14071 = JCM 3263 strain NBRC 14071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9745 29 100.0 32 ............................. TCGCCGCGGCGCGGGCTGCGGCGCGGGCCGCC 9684 29 100.0 33 ............................. ATCGCTGATAATTACAACGCTTCTCAAGCCGCA 9622 29 100.0 32 ............................. ATCCCACCTCCACTACCGGAACGCGGACGTTC 9561 29 96.6 32 A............................ TCATCGTCCGGATACAGGCCCCGGTAGGGGTC 9500 29 100.0 32 ............................. TCCCCCACCGCGGTCTCCTCCTGGGAGCACGT 9439 29 100.0 32 ............................. TCCGCGTAGGCCTGGCCGAACGCCGCGCGGGT 9378 29 100.0 32 ............................. CTCGCGCCGGTGCTGGGTGATCGGGATGGCCT 9317 29 100.0 32 ............................. AACTAGAGACCGCCCTAAGCCAGGTCCAAACC 9256 29 100.0 32 ............................. ACCACCTGCACGACCACCGGGCGGAGATCCTC 9195 29 96.6 33 ............................C GCGTGCACACTGCCGCGGCGGATCTGGGCTGCC 9133 29 100.0 32 ............................. GCCCGGGTGAACGCGATGGAGCGGCAGGGTCG 9072 29 100.0 32 ............................. GTCACCGTCTGCATCATCCCGGGGGACCGGGT 9011 29 100.0 32 ............................. GCATCCCGTTTGGGGAGCACGCGGACGCTTCG 8950 29 100.0 32 ............................. CCGAATTCGACGAATAAAGTATCGGGAATAGA 8889 29 100.0 32 ............................. ACCAACCGGTGGATCGCCGCGTGCACACGACG 8828 29 100.0 32 ............................. GCTGCTGATGACGTGCCGTGCTGGATGCGAAA 8767 29 100.0 32 ............................. TCCTCGATGATCGCCGTCTCGGCGACCCGGAC 8706 29 100.0 32 ............................. CCGAGGGGATCCTTGCTTGGGCAGTACGCGGT 8645 29 100.0 30 ............................. GCGTGGCCGAGCGGCTCCAGGTCAGCTTCT 8586 29 96.6 32 ............................T GCGAGCTGGACCGTGCTCCTCCCGTCGAGGTC 8525 29 96.6 32 ............................C TGTTCCCGGCCGGTTCCCCCGCACTCGCTGCA 8464 29 100.0 32 ............................. ATCTCACCAGCCAGCTCAGCTGGGGCTACCAG 8403 29 100.0 32 ............................. ATCTCACCAGCCAGCTCAGCTGGGGCTACCAG 8342 29 100.0 32 ............................. GTGAAACCCAGGCCAGAACAACGCGGAATCAC 8281 29 100.0 32 ............................. CGGATCATCGCGCTGATGGATGAGCGGGGTGA 8220 29 100.0 32 ............................. ACCATCCCGCGGTCGGTAGACCTGGCAGAACG 8159 29 100.0 32 ............................. GGCTCGCCATCGGTGTAGTCCAGCAGGGCGCG 8098 29 89.7 0 ........T..............A.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.1 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CAGAAGGTTGGGGGTTCAAGTCCCTCCGAGTGCGCCACCTGTGACTGAGGGCGGCACCTGAGAGATGCCTGCCCTCAGTCGTCTGCTTCAAGGATCGCTTCAGCAATTGCTCCGGTCTGCTGAAGCCGGTTTCCATCCCATCACTCTTAGGCGTTTCTCTGGGTCGCTGTTCCCCGCGTCTTCACATCAAACATGGGTGTGTGCTTCCCATGCACCCCGTATCGATAGGGATTCGAGCCTGCACGGCTGGTATCGCTGCGGCCTGGAGACAGCATGGGGACGCACCAACCAGTCGTGACGCCTCCGGAGTGATAACGGTGCTCACGGCATCGCCTCTTCAACCCCCTGGGGCCACCAGCTGTCGCCAGGCTGCGGTGATCAGTTGGGTTCGAGCCCTGATCAGATTTCTGGAAAACGGTCTAGAATGTCTTGTGTGATGAAGCTGCCTACGCCTTTGATAACGATGAGATAACGTCTCGTAAATCTGCAGGTCAGCTTCT # Right flank : AGCTGAGACGAGGGCGGGAGAACAACAGTGCGGGTGGGCTGTCCTTTCCCGCTGTGCAGAGCTGGGTGGGGGAGAGGACGAGTCAGCAGACAGTGTGGAACGGGCGTACGCCCTCAGGCGCTCTTTCAACGCTGAAGGCCCAGGCTCGGGATGATCTCCCTGACCTGGGCCTTCGCTTGTGGAGCGGATGACGGGAATCGAACCCGCGTCTTCAGCTTGGGAAGCTGAGGTTCTACCATTGAACTACATCCGCACTGGTGGCGATCTCGCCTACGGCTAGGCTATCACGCTCGGCGAGTTCACCGATAAGAATAACCATCTCGGCGAAGCTTGCAAGGGGAGAGCTGCCCTGCCGAGGTAGGGAAAACACAAGGTAGATTCTTTACTGTGCTTCTCTCCGACCGTGACCTTAGAGCCGCCATCGAATCGGGGCGGGTCAAGCTAGACCCCTACGACCCTGAGCTTGTCCAGCCGTCGAGCATCGACGTGCGGCTGGACCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //