Array 1 2475223-2477447 **** Predicted by CRISPRDetect 2.4 *** >NC_015460.1 Gallibacterium anatis UMN179, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2475223 36 100.0 32 .................................... ATATGCATTACCGCAGTTCTCCAATAAGAATT 2475291 36 100.0 35 .................................... CTCCTTGTCGTTATGGTCTTCGTATTTGACAATAT 2475362 36 100.0 32 .................................... ATTTCATCAATAATCGCATTTTCAACATACTC 2475430 36 100.0 36 .................................... ATTGGTACTCGTACCCATCATTATCATCTGCAGTAC 2475502 36 100.0 32 .................................... ATAAGTCATTGCGTCCTTTGAACACAATGCAT 2475570 36 100.0 35 .................................... GTGATTAGGTTTTCAAAATAGGTTTTTTGAGAGTC 2475641 36 100.0 34 .................................... TTCCATTTTGGTTTCCCCTTATCTAATGAATATC 2475711 36 100.0 35 .................................... CCCTGTCTGGTGTACTCAATCATAAAATCAGGATC 2475782 36 100.0 35 .................................... GTTAGATTTCCATTTTTATAAGCTACTGTAGTCAT 2475853 36 100.0 34 .................................... TCCAAATGATACCCAAACCGCAACCACAATCTAA 2475923 36 100.0 34 .................................... CACCTATGTCTGTTAAAAGTTCTGAATTACCTCG 2475993 36 100.0 36 .................................... CCCTAGAAAGGTATCTAGGACTGCGGATCTGTTCAA 2476065 36 100.0 36 .................................... AAAATTGCAGGCCTGTTCAGCTGCGATTTTAGCAAT 2476137 36 100.0 35 .................................... CTTCCATATCCTCGATTGTATTTTCTAATGATTTG 2476208 36 100.0 35 .................................... ATGATAAAGTCATCGAATAAATGTTCGTGTTCTGT 2476279 36 100.0 35 .................................... TTTAAATCAGAAAGATAAGAATAGACCTCATCCGC 2476350 36 100.0 36 .................................... TATTTCTAGTTCGTCGTCTTCGTTCGGCTTGTGTAG 2476422 36 100.0 35 .................................... TAGCATCCATTGGTGGAAACTAGGGGCGTATACGG 2476493 36 100.0 32 .................................... TTCAACCATCCGAAACTTACGCATATCTGGCA 2476561 36 100.0 34 .................................... TGTTGCTGTGGCTAGATGTTGCGTTAAATTTAAA 2476631 36 100.0 36 .................................... GGACGGCGTCCTCCTCACCCTCTTCTAAGACATTGT 2476703 36 100.0 33 .................................... CGTTATATTTGTGTGACCTTTGTAATCGCCAAC 2476772 36 100.0 35 .................................... GTTTATTATTTCCTCTGCAATTTCAATAATTGGAT 2476843 36 100.0 33 .................................... TTTATGTTGTCTGGTATGCTCAAGCATAAACTC 2476912 36 100.0 37 .................................... TGATGTGTACTTCACCATTTTTATTGGTGCAGTTTCC 2476985 36 97.2 33 ...................C................ GACTGATCCATCAGGGTTTACGGTTTCAACCGT 2477054 36 97.2 35 ...................C................ TTGAGTCAAGTTAATAATGTCCATTTTTCAACTCC 2477125 36 97.2 36 ...................C................ ACCAGTAGCCGTTCCCTTTTTCTGAATTTTTAAAGA 2477197 36 97.2 37 ...................C................ TTTCTGTTTGCCGACAGTCTTATCCATTTCACGCAGC 2477270 36 97.2 35 ...................C................ AGTTCTTCAGTTGTATCTACTTTCTTGTACCCTTT 2477341 36 97.2 35 ...................C................ AGTTCTTCAGTTGTATCTACTTTCTTGTACCCTTT 2477412 36 83.3 0 ...................C...........ACTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 32 36 99.0 35 GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATCGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCGCTACCAACCAGACTATAATTTTGCTTAAATAATAATCATATTGGAGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACAGTGTCGGGA # Right flank : TTATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAGTATTTAGTGTATAAATTTAGGAGAATTTTTATGAAAACAATTGCAATTATTTTAACTACCTTATTTGCGGTTACCGTTACTGCGCCTGTATATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCGGATAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTTGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGACTGGGTGAAGGCCCGGTGGAATATTATGATTATGACAGTGGAGAATATAAATCAGGTTATTTAGATCTATTTCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2519755-2519249 **** Predicted by CRISPRDetect 2.4 *** >NC_015460.1 Gallibacterium anatis UMN179, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2519754 28 100.0 32 ............................ TAAAGTAGATATAAATGATGAATTTGATGTTT 2519694 28 100.0 32 ............................ ATTTAATAAAATCGCTAGGCAAAAAGAATTTT 2519634 28 100.0 32 ............................ TGCTGTAATATTGGCGAACGTGCTAAATTAGG 2519574 28 100.0 32 ............................ ACAAGTTCGGCAAGGTATTTTATCCACGATCC 2519514 28 96.4 32 ........A................... TAAACCTCTTTTAATTTCAGCTTCGTGTTCCG 2519454 28 96.4 31 ...............A............ AAAAAATGACTTAGTCATTTTTTAAAATTTG 2519395 28 100.0 32 ............................ TAAATAAAAGGCAAACGCCATTATAAATTAAT 2519335 28 100.0 32 ............................ GGTACTTTATTGACGTAAACGCTATAAAAGCG 2519275 27 78.6 0 ..............G.AA.TT...-... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACATCTAAAAAAGGGTTTTTATCTTAAAATGTTCTTTAACAATTGACTTTCCTTATATCATAAGGTATTCGTGTCTA # Right flank : TACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCCTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTATCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGAAGAAACAAGCCAAGGCTTAATTCGGGTATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTATCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTGCTACAAGCGAACAATGCGAAGTCAATTTCGCATTTTCTGTACGCCAATAACCATTGATATAATTTGTCTTTTCGTTATGGAACAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //