Array 1 1066449-1064652 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUZ01000001.1 Gardnerella vaginalis ATCC 14018 = JCM 11026 strain ATCC 14018 NODE_1_length_1544373_cov_316.280942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1066448 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 1066387 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 1066326 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 1066265 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 1066204 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 1066143 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 1066082 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 1066021 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 1065960 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 1065899 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 1065838 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 1065777 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 1065716 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 1065655 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 1065594 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 1065533 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 1065472 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 1065411 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 1065350 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 1065289 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 1065228 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 1065167 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 1065106 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 1065045 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 1064984 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 1064923 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 1064862 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 1064801 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 1064740 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 1064679 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : TAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //