Array 1 96829-94179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWZL010000014.1 Klebsiella pneumoniae strain EKP11 NODE_14_length_167195_cov_61.8068_ID_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96828 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 96767 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 96706 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 96645 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 96583 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 96522 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 96461 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 96400 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 96339 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 96278 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 96217 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 96156 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 96095 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 96034 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 95973 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 95912 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 95851 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 95790 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 95729 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 95668 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 95607 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 95546 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 95485 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 95424 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 95363 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95302 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 95241 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 95180 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 95119 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 95058 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 94997 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 94936 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 94875 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 94814 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 94753 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 94692 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94631 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94570 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94509 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94448 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94387 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94326 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94265 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 94207 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7547-6612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWZL010000016.1 Klebsiella pneumoniae strain EKP11 NODE_16_length_130661_cov_102.605_ID_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7546 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 7485 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7424 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 7363 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [7310] 7309 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 7248 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 7187 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 7126 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 7065 28 93.1 32 ..........-..T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 7005 29 89.7 32 ............TC...........A... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 6944 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [6933] 6882 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6821 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6761 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6700 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6639 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.5 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //