Array 1 54720-55012 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCBP01000007.1 Paenibacillus kribbensis strain 6hRe76 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54720 32 100.0 35 ................................ GTCGAAACCGCTTGTTTCCCTCCATGATGGTACAC 54787 32 100.0 34 ................................ ATCGCTCACCGTATCAAAGGGCTATTCGCGTAAT 54853 32 100.0 35 ................................ GTTTCAAGTGGAATGATCCTGATTCCCAGGACAAG 54920 32 100.0 29 ................................ CTTTACTTTGTGTATTTCCTGTATGCGCT 54981 32 84.4 0 ........T...G.A........A.......G | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.9 34 GTCGCTCCCTATATGGGAGCGTGGATTGAAAT # Left flank : TGAATATATTGAGAATTATAATGACTTAAAAAAGAGCCTAACGGAGAAATACGGCAAGCCTAGCAGTGATGATACCCTTTGGAAGGGAGATTTATACAAAGACACGCCAAGCCAATGGGGAATGGCTGTAGCGACAGGCCAATTACATTATCAGGCAGCATGGGAGACAGAAGATACAGAAATTTTGCTTGATTTACAAGGTGATAATTTCGAGCCCCGCCTGAGTCTAGTGTATGACAGCAAGGAACTACAGCATTTGAGTGAGCAGCAAAAGGATCAGGAATTGAAAAAGAATTTATGACAGTACAAGGCATGGGTTCCATAGGCTTTGAGTGCGAACCCCAAGTGCACATGAAATCCCCGGAACATTCGCACCCCGCGCCAGATAAGGGATTCAGCGATTTTGGGGTGTGATTTTTAACATTTATTGGTGAGTTGAAAAGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTAGGTAAGGCTTTGTAACGTGTGCA # Right flank : GCACGTATTTCTCATACCACACATACAGCACAGCTATGACGTTCCTCATTTTTCATTGAAATACACAAAAAGGTTTGCCTTAACACTTGGCAAGCCTTCTTGTGCTGGTTGTAAAACGGAAATAGGTTCATAATGAACTAACATTTTTATAGATGTGGAACTGTTCGGGCCACCATTTTAAAAAGTGGAACACAAAAAAGAAATCCGTTTTGGAATCAGACTCCTTAATGTCTTCCCACGCTAACATGCACAAACCACGCTATTCTTTTTCTTCAAACTGCATTAACACGGAAATGTCTTTGATCTCCAGAGCATGAGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCTCCCATTTTTACAAAGCTGTGAAATTCTTGCTTGGTTAACCCCAGATTTTTCCGAAAGTTGCATTTGCGTCATATTTCGCTCTTTTAACACTTCTTTAAGCCTTATATTTAATTTTAGCAAGAAAAAGAAACCTCCTAAAAACTCA # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 56405-56573 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCBP01000007.1 Paenibacillus kribbensis strain 6hRe76 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 56405 32 100.0 35 ................................ ATTATTAGCGACCACTATATACTCCCGGTCAGTAA 56472 32 100.0 37 ................................ TTCCGGGCTGAGGGTGTACGTTTTGACGTCACTTGGA 56541 32 93.8 0 .....................C.....A.... | G [56562] ========== ====== ====== ====== ================================ ===================================== ================== 3 32 97.9 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ACCACTAATGATTTAATTCACCTGCTCAAAATCAGTCCGGAAGCTGTACAGATTCGTCATGCTATGCAAATCATACTGAATACCGTTGAAAGACGCAATGCGTTTATCCGTTGTATCATTAATGTGAATGAACAGGCAATCTGGAGTCTGCTCTGCCAGATGAAAGACGAATACCTACGTTATGAGCAACTCTCGAATGAAACCTTTATGGCTATGTATGCTATGAATCCGGTTGAGGCCTTATCTGTATATTTTCTTGAATCCGTAGATGTACATATGTACTGGGAATGGTGTGATGCTGGCGGTACAGGCAAGCAGGCCATTCAGTATAAGCAGGAAGATCCTTTTATGACGCTAATTCAAGCGATTGAAAGAGTAGAAGAGGAAATGTATGCCCGTACATAACAATCCATAAGTGTAGTTGCTACGCTGACGACAAAATGGCTTGGGTGGGTAGTTGGCTAGTCTCCTGCAAAGGATGTGAGGGCTGTGGAGGTTAA # Right flank : TCGCGAGCAATTGAAGATTTTACGACTGCTTAACGTTGTTACTCCACTTAAGGGAGTACGACGTTTTCGCTAAGTGTAGATACAAATCTAATTTAAGCTGGCTTCCTTTTAAATCAAGGGAGCCTTTTTCGTTGTGTTTTTATAGACAGAAAAAGAGAGACTTCTTCCGTGATGATAACTCAAGTAATAAAAAAATTTGAAGAAGTATCTTCCATTAGAACCAGAATTAATTTATGATAGAGTTATACATCCTAGAATTTTCCTGCGTTTATTTAATAGCTGAATTTTTTAACACATTTGAGAGGAGATTTCAGAATGAAAAGATTCAGAAAAGTGATTTCAGTTACATTAAGCTCAATGCTCCTGCTTTCATTCGGGATGACGGCGAACGCGAGTGCGGGCACAGAGGGGAAGACGGATCAAGCGATTCAAGCGGCTTCCAGTGTACAGCTAACAACGGATAAAGAAAGTGTTATAAAACAATTAACGCGTGCGGACAA # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 207201-206568 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCBP01000001.1 Paenibacillus kribbensis strain 6hRe76 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 207200 32 100.0 34 ................................ AGCTGTGGCGAATGGCGTTGGTATGTCCTTTCGG 207134 32 100.0 38 ................................ CGTCCAAAACAGAAAATCACTCGCGCCGAGGCGGCAGA 207064 32 100.0 34 ................................ ACAATGCTGGATATGCATCCAACAAGCTATACAC 206998 32 100.0 33 ................................ TTTGTTCGACCAAGACAAGCCCGTGCAACCGGA 206933 32 100.0 35 ................................ GTACATACAAGTGTACCAATCCTGACTGGACGTAA 206866 32 100.0 34 ................................ AATACCCCTACTCGCTATGGTGATTTGGGCAAAG 206800 32 100.0 35 ................................ AACGATATCCTGCATTATGCGTTCGTTGGCATCAT 206733 32 100.0 36 ................................ TGAAGCCATCTGTTTAGCAGCTCTAATAGCTACCCA 206665 32 87.5 34 ....................A..A...A..G. TGGGTGCTTGAAGACTATCGACTTAGTTATTACC 206599 32 71.9 0 C.T......C...T...GA.A....G..C... | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 95.9 35 GTCGCACTCTATACGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAAGTTGTTAATCCTAATTACGTATGATGTAAGTACGGTGGATAGAGAAGGCAGAAAAAGACTCGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAACTCCGTATTTGAATGTATTTTGGATTCGACCCAGTTCCGCCGTTTAAAATATGAATTAGAAGAATTGATCGATAAAAAAGAAGACAGCCTGCGATTCTACAACTTAGGAGATAACTACAAAAAGAAAGTAGAGCACGTAGGGGTCAAAGAGGCTTACGATATGGAAAGCCCGCTCATTTTGTAAGGTGCGAATGTGAAGCTCGCATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAAGATGTGAGTTGGTTGTTTTCGATAAATGTCAATGCTTGATTCAAGCCTTTTCGGCATCGTTTTTTTGCGGAAATATGTGGAATTGATCTCATTAGAGTATGAATCACTGCATTTTCGCT # Right flank : CGTGTAAAACTTTTTGCTAGGGGCAATCCGGTTTCCTTTTGATACTCGGTTCACCATATGTCCTCTTATAAAGTAAGTTATGCAAAATTTTTGTTTCAAATAATGTAGACATAATATATTGACAGATGGTTAATTTTGGTGAAAAATAAAGTGTGGATTTTAAAATTATGGAATTTTTATGTGAAAGGTGGTTATGACTTGAAGCATACACCTACGATTACGGCAGAGTTTGAGGATTATCTAAAACAAAATGACATGACATTGGCTCAATTTGCGGAATATTCAGGTGTTCATCAAAGAACGCTTAGTAATTGGATTACTCAGCATCGTCCTGTTTCCGTGGAGCAGCTTGACAGAATCACTGTGGCTATGGGTTTACCGGAAGGCCACTTATACGACTTATACATAGAAAACTACATCATCGAACGTTCCCCTAATATGCGTCGAATTGAGCCGCTGATATATCGTTGTGCGGAGTTGGACAAGCTGGATGCGATCCG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 217301-216603 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCBP01000001.1 Paenibacillus kribbensis strain 6hRe76 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 217300 32 100.0 36 ................................ CTGCACACCACCTTGCACCAGCCTGCTCAGTTCAAC 217232 32 100.0 33 ................................ ATTTGTAGTCGCTCTACTTGTTTGTGCAGATCC 217167 32 100.0 36 ................................ ACGAAGAATCCTATACGCTTGAACTCTACCAATCGG 217099 32 100.0 36 ................................ GATATCGTAGACGTAAACGAAGCGCCTGATTTTCAC 217031 32 100.0 34 ................................ ACCGTGAAATTAGCGTGATAATGGACGATGTATC 216965 32 100.0 34 ................................ ACTCATAGCGGCACCTCATAGTCACCGAACCAAC 216899 32 100.0 33 ................................ CGTAAACACTGCTAGACGCGAGATAAAGCTGTC 216834 32 100.0 35 ................................ GTGTTTATGCTCGTTATGCCTTGGTCTGCGGCCTT 216767 32 96.9 36 ..........G..................... CGGCTCATACTCAAGGATATCCGTAAGTGTTATCGA 216699 31 87.5 34 .C.......C.............A..-..... GCAAAAGGCAAAAAGGTACGTTTGGTTGGCGATG 216634 32 87.5 0 ..T......G..G.......A........... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CAAATTCCATATTCGCGTCAATGTCATTTATCCTGGTGCCATTTCGACCAATATTGATGAAACAACGGAGAAATCCGAAAGGTTAAAGCAGATTACTATTCCCGTTCATTTTCCCGAAGGAGGGCAGCCGCTGGCGAATGGACCTGGCCAACCTGAGCAGGTAGCTGATTTGGTAACGTTCCTGGCCTCTGATCATTCGCGCCACATTACGGGTGCACAAATTGTGATTGATGGGGCAGAGTCCTTATTGTTTTAACGTGAAAGCATTTCTATGACGGAAAAAGGATTTATGGTATTCTGATTGTAACATTTTGGTTAAGGTGCGAATGTGAAGCTCACATAAAATCCCCGGGTCTTTCGCACCTCGAAATTTGTCGAAAAGGATTAAATCAGTTGTTATTGATAAAAGTTAATCGTAGATTCAGGCTTTTTTGGCATTGTTTATTTTGAAAATGTACCAAATAGATATCTTTTTTGGATCAATTGGGTACATTTTCGCT # Right flank : CGTGGACATTCTTATAATTACGAAGCAAAAGAAGTAATACTGGACTTTAACGGTGAAATTGATAGGAAGCTAATAAAAGGAGTTGGAGAAAAACGGACAGGAACTAAGTGTAGTTCAATAATTTAGTGAAGAGGCACAAAGGATAGGAAAAAAGACGGAAGTTATGTTTAAAAAGCATGAGAAAACCCGCTAAGGGCGGGCTCTTCAATATAATTATATAGTTTTCAATCCACGCCTTTCAGCGACATGGCGAGTGTATCATAAATCGTTAGTTTAAAGCAATTTTTTAAGGACTACGTTGCAAAAGATAATTTTTTTTGATCTTTTGGGAGGTGTATTACTGTGTTTTATATAAGGTTCCTATAAAATTATATTCAGAAAATCTTTGAGGTAGACAATGTTAATTTTCAGTAGTTTATTTCAGTAGTTTATTAGTGAAATACAAGGAGGCCTTTAAAGATGGAGAAAAGCAGTTCAAAAACAGAAAACACTTTGGGGAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 219024-218658 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCBP01000001.1 Paenibacillus kribbensis strain 6hRe76 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 219023 32 100.0 36 ................................ CTTTCATTGCAACTACTACGGGAAAGAGATTAAGCC 218955 32 100.0 34 ................................ AGTCCGAAAAATTTTTACGTACTATGCGGATCAG 218889 32 100.0 34 ................................ ATTACATCACGCTTGGTGATCAAGGTACTAAGGA 218823 32 100.0 35 ................................ TCCCGGTTATGCTATCGCGCGCGTACTCCATGTTA 218756 32 100.0 35 ................................ GATATTAGCGGTTGATATCGAAGACAACAAAATAG 218689 32 87.5 0 ..T..........C......A..A........ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.9 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CGACTATGGAACGGTATGGAGGAAATCAGCGAGCTGTTTGATCATACCTTCTCCACAGCGGAGCGTTGGTCCACAAGTCGTGGACCGATCGGAGGTAAGCCTCATTGGTACGAAAGAAGCATACCCGTAGATATGCCGATGAGATTACAGGTATATAGTGACGGTTTATCCGATTTGGACCCCATTCGCGAGCCTGTCCCAGATGAGCAGATACAAGTATTACTGGATGCCTCCCATACCGGGGGACTCGATGATGATGCTGCATTTATTGAATTGCAGTGGTAGGTGAAATAAAACGCGATCCTACTTTTACTGAGAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGTTCCTTCGCACCTCGAAATTTGTCGAAAAGGATTTGAATTGGTTGTTATTGATAAAAGTCAATCGTAGATTCAAGCTTTTTCGGCATCGTTTGTTTTCAAAACGTACCGAATAGATACCTCTTTTGGATCAATTGGGTGTATATTCGCT # Right flank : TAGGATAAAATTAGAAACGATTGGCTTATTGATGCTTTCTACCCACAAGGACTCTGTAATGGCTAAAACCAAGGGGAGTCCTTTTTCTTTGTTCCTGGTCATCTTTTGTAAATGGAATTATGCATATTTTTCATTTATTGAATGCAACGGAGGTAGAAGAAGAAAAGAAGTGGTATTAACGTAATGCTCTTTTTTCTCGAGTAACGAAAAGAAATAGCAACAAAAGCGCAAAAACGGTGATTATAAAGTATGCCCTTTTGGGTAATCTTGTGATTATACAGGACACTGAAAGGAGCGATACATATGAGCTACACACCTCTAGGAAGCGCGCGCTTTGAAGGTAAAACTGCTCTAATCACGGGGGCCGGTTCTGGAATTGGCAAAGCAACGGCCATTCAAATGGCGAGAGAAGGAGCGAATGTCGCCCTTTTTGACGTAAGTAACGAGCGGATTTTGGAGACGGAAAGTGAGATTAATGCGATACGAGAAGGCTCGGCCCG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //