Array 1 11828-8606 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFW01000107.1 Flavobacterium psychrophilum isolate 79-SE570_S16_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 11827 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT CT,T [11814,11820] 11748 46 100.0 29 .............................................. AAAACAGAAGTGCAATTAGCAAGGAAGTA 11673 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 11597 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 11521 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 11445 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 11369 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 11293 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 11217 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 11141 46 100.0 29 .............................................. TTACGAGCAATTAACAGTTAAAAATACTA 11066 46 100.0 28 .............................................. CCTCATTCCGCTTCATCTGGATCCATAC 10992 46 100.0 30 .............................................. AATATGCAACTTACGGATTGTTTCTTCGTC 10916 46 100.0 30 .............................................. ATTTGAATTAATATTTCAATCTGAAACCGT 10840 46 100.0 27 .............................................. AAGTTTCTAGTTCCATTAATGCCTCTC 10767 46 100.0 25 .............................................. TTAGATTAAAAAAAATACTAACCAA 10696 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 10620 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 10544 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 10468 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 10393 46 100.0 30 .............................................. TGACAACGGGATAGAAGCAAATGTTTCTAA 10317 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 10241 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 10165 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 10089 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 10013 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 9937 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 9861 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 9784 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 9708 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 9632 46 100.0 29 .............................................. TTTCATATGAATTGGGGCTTGTCAGGTAA 9557 46 100.0 29 .............................................. TTATTGTCACGCTTGACGTCTAATGTTTC 9482 46 100.0 30 .............................................. CTTCAAAAAAGATTGTACGAAGTACTATTG 9406 46 100.0 29 .............................................. CAAAATGGAATATAGCGTAGCCGAAATCA 9331 46 100.0 30 .............................................. ATTTATGCGTGAAATTAGATTGCCTGTTTT 9255 46 100.0 29 .............................................. ATAAACAAACTTACGATAACAATGGCTAT 9180 46 100.0 30 .............................................. TCAGTTGCTTCAATTGAATTGCCCAGCATT 9104 46 100.0 30 .............................................. CCATTGTCTTGTATCTCCTTATCATATTGC 9028 46 100.0 30 .............................................. AGGAGTCGATTTTATTGTTTTTGTGCCCAC 8952 46 100.0 29 .............................................. AGTTCCAGAGGTTTTGCAAGAGCCATCAT 8877 46 100.0 28 .............................................. TTTATAAGGACAAATCTTCGGTAATATT 8803 46 100.0 30 .............................................. GTTGCTTCAATTTGCGAATCTTGCCCAGCT 8727 46 100.0 30 .............................................. ACCTAGTTTTGCTTTGTTTATCTTTTTGTC 8651 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 43 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 471-304 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFW01000007.1 Flavobacterium psychrophilum isolate 79-SE570_S16_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 470 29 100.0 40 ............................. CCGATGTTAAACCAAAACAGCCAAAAAAAGCAAAATTTTC 401 29 96.6 40 ........................T.... CTGATATTAAACCAGAACAGCCTGCAAAAATACCCCTTCT 332 29 96.6 0 ....A........................ | ========== ====== ====== ====== ============================= ======================================== ================== 3 29 97.7 40 AATAGCAGTCACAGAATTAGGAATGGTAA # Left flank : CCTAAAAAAGGAATTAAAATAAAAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTGATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGGCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAATCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAGATTACTTTCTATTGCAAATGAATGATTAGAAAGTAAACTACCAGAAATAGGGCTAAAATCTTTCCAAACAGCCGCTGCCTGATAAACAGCTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAACATTATGGAAGACATTTTTATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTTCTTAAACTGCTACATTCTGCAAAAGCACGCTCTTC # Right flank : ATCGATGTTAGACCAGAACATTTTTCAAAAGCAGCATCTCCGATAGATGTAACGGTATTGTTAGGGATTGTAATTGATGTTAAATTAGAACAAAGCGCAAAAGCATCCTTTTCGATAGATCTAACAGAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGTAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGCAGTCACAGAATTAGGAATGGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //