Array 1 25229-24539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJCV010000006.1 Holdemania filiformis isolate MGYG-HGUT-00192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 25228 32 96.9 34 .............C.................. GGCGTATCGGCTTGCTTCGTGCTTTGAATCAAAC 25162 32 100.0 34 ................................ TTTTAAAATTTTCGCTCCAAAACGACTCAAGTCA 25096 32 100.0 35 ................................ CATCGCGGCCGGGGCGCAAGCCATATAAATAACGC 25029 32 100.0 34 ................................ AGCATAAGCAGTCGCTGTAAACTTTTCGACCGTG 24963 32 100.0 34 ................................ GGTGCTGCGCGAAATGAACTATGACCTGAACGTA 24897 32 100.0 33 ................................ TCCATCAGAGCTTGGCGGTGTTGCTCAAAATTC 24832 32 96.9 33 ...............T................ ACAGCTAATTGCATTGATTGGGTAAATTTGCAT 24767 32 100.0 34 ................................ ATAATCATTGCTTCGTCGTCCCAGCTAATAAGTC 24701 32 100.0 33 ................................ TTCGATTTTGGAATTGAGGTCATCGTAGATCCC 24636 32 100.0 34 ................................ TTACAATAGGCGGCCATATCATATGGGTCAAAGC 24570 32 90.6 0 ....................A..A.......C | ========== ====== ====== ====== ================================ =================================== ================== 11 32 98.6 34 GTCGCAAGCTACATGCTTGCGTGGATTGAAAT # Left flank : ATTCAGTCAATGAAGACTGGGTTAATTCAGCGAACGCCATTAATGAAGTTGGGTGTATTCATACGGTTCAGGGTTATGATCTTAACTATGCGGGAGTGATCATTGGTCCGGAGCTGGGGTATGATGAGCAAGCGCAGCAAATTGTAGTTCATTCGGATCAATATTTTGATCGCTTTGGTAAAGCCGCGATTCATGATGAAGAAATTTTGAAAAAATATATTCTTAATATCTATAAGGTTTTACTAACGAGAGCCATTAGGGGAACTTATGTTTACGTTTGTGATCCTGCATTGAGAAATTATTTTAAAACTTGGATAGCTTCTGCGGATGCGGTGCGAACCTGAAGTGAACATGAAATCCCTGGGAGGTTCGCACCGGGGACTTTGTAAAATTGTTTAGATTATAGTAAAATAGTATGGTAAAAGGGCAGGATTTCTACTAATCTGATGATAGATTCTTTTTAAAGATACATCCAATTAGCATAATGTTACTTTTTTGTA # Right flank : ATTATTATTGTGTTGTAGTAGAAAAAGCATGCTTGAGGAGCTGTGCTTTTTTACTGTTGATTGGGCGTTTAAGCAAATTTTAAACATGTATAAGCTCATCTCTTAAATGATTGAATTCCCAAGAAAATTCCAGAATGAAATAAATCTGTGAAAACCTGGGATTTATCCAACTTTTCTTGGATTGCACGGAGGGGAATGGTATAATCAAAAAGGTGATTATACATGTTTCATACTTCCGATTGTAAAAAATTTAAACGATGTCAGAAATATTTCTGGCTTTCTAAAAAAGAACCGACACCGCCATTCTCTCCCTATGTCAGGATGGATGAGGATTTAACGGCGCTGGCCTGCCAGAAATTAGGAATTAAGGAATATTTTCAGGGAGTTCGCGGTGATGATCCGCAGCGGGCTATGGCGGCGCTGGAAGAATCAGAATGGCTGGTTTCCGCCCGCTTTGAATTCCATCAGCTGCGTGTCAAAATTCCCTTTCTCCACAAAAC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAGCTACATGCTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64753-64386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJCV010000008.1 Holdemania filiformis isolate MGYG-HGUT-00192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 64752 33 100.0 32 ................................. CGGGAAAATGACTCATACTGCTGAAAGGAAAT 64687 33 100.0 34 ................................. GTGAATCGTTGAGCAAGGAGAAAGGATTGATTAA 64620 33 100.0 34 ................................. AGGTGCATCGATATCTGTACCTTTAGTGTAGTCT 64553 33 97.0 35 G................................ CCGTCATGACGTAGGTATTCCACCAGTCTAACGCC 64485 33 90.9 34 G............CG.................. AGGCTCAGACGATGGACAATCTATTAACCAAAGG 64418 33 90.9 0 G............CG.................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 96.5 34 TTCGCATCGCTCATCCGGTGCGTGGATTGAAAT # Left flank : AGCAGATGATTTCGGATTCACTGTGCGGACAGCGCTGGGCGAGCAAAGCGAGTGTTGTTTTCTATTGGTCGCTGGTAGCCTATCGTTGCGAGTGGCGATATGGGATTCGGGCGCATCGAGTGGCATTGATCGACGTGGGACATGTTGGACAGAATTTATATCTGGGCTGCGCTGCGCTAAATTTAGGGGTTTGCGGGATTGCGGCGTTTGATGATAAAGTTTGCAGTGACATTTTTGGATTGGATAAAGATGAGGAATTTATTATTTATACTGCACCTGTAGGAACGATTAGTTCTGCGGATATTGAGAAAGAAAAAGGTTTCTATCGATTTGTGGAAGAAGAAGGTCTTTAAGTGCGAACGTGAAGTGAACATAAAAATCCTGGGAGGTTCTCACCGGGAAAATGTGAAAATTAAAGAAAATATTGCAAGTGTACCCAAGATTGTTTATCATAGAATTGAAATAGGAAACAAGTAGAAGTCATTAAGTTTCTTATTTGC # Right flank : ATCTGCACGTTAACAACCCAACGGAGATATGTACGTCGAATCACACAAATGATACCCCTCTCTTAATACAGGCAGCGTATGAATTAAAACTTTTTCAATTTATGCGAATTAACTAGGCCGAAAAAAAATCTCACTTAAGAATAAGCGGGATTCGATCCAACACAGAAACGTTTTATTAGAAAACTCTTATCAAACATTGTATCGGTTATCATTAAGTTGCTCCGCGGATCTGCTTTACAAAAAAATAAAACAATACCTTGAGCAAATGAGTTCAACTAGGTAAACTTAAAAAATTAAAACTCTAACGACCACGAAACCAACACGATTGCTTCTATTCATCCCGTTGTTCGTAAAAACACAAAACATCGACCAAAATCACGAAAAATCTGAAAATGATACGTTTGGGGTACGAATGGAAAACGAAGGTATTAAAAAAGCCCTTAATTAAGGGCTTTATTGTTAACTGGTGCCGATACCCAGAATTGAACTGGGAACTGAGC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCATCGCTCATCCGGTGCGTGGATTGAAAT # Alternate repeat : TCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 71442-72885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJCV010000008.1 Holdemania filiformis isolate MGYG-HGUT-00192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 71442 33 100.0 34 ................................. CTAAACTTGAAAATAAGCTTTTAAAGGAAAAACC 71509 33 100.0 34 ................................. GACGGTGTCAAAATACTGTAAAACTCCCCATCGC 71576 33 100.0 36 ................................. AGCTGCCGTTCTATTTCTTTGCGGTCTTTCGCGATA 71645 33 100.0 35 ................................. CTCCTGACCGTCTGATCTGGCGCTGATGTTCCAGC 71713 33 100.0 34 ................................. GATCATGCGGTACTTTCGTTCAAGTCTGCCTTCC 71780 33 100.0 34 ................................. GCGATGTTTGTGGATTGTGGAAACGTATTGTCCA 71847 33 100.0 35 ................................. CCCGAAGACCTATAAAAAAGGTGGCGCCACCAACG 71915 33 100.0 33 ................................. ACTTTGTCCCAGTTGATTGTTCCGTTATGCTTT 71981 33 100.0 33 ................................. CCATCGAGCTGCCGCATCTTCTCACTGCCCGTG 72047 33 100.0 33 ................................. TGAAATACTCGCAAACTGCGACGATGTCGGCCA 72113 33 100.0 34 ................................. TTGGACGCTTCCACGGCCTGTTTTTCCAGGTCCT 72180 33 100.0 34 ................................. TTCAACGCCGTTCATCGTCGTGTTTCTGACGTCG 72247 33 97.0 35 ..................C.............. TGTCCAATCTGGATCGTAGAATTTTAAGTAACTGA 72315 33 100.0 33 ................................. ACCTCACACCTCCTTTATTTGTTTGGAAACCTT 72381 33 100.0 34 ................................. CAAGTTCCCACAGTTATACACGAATATCTGCGAA 72448 33 100.0 35 ................................. AATGGCGACGGCGCAAGTAAAGAGTACAAGCTGAC 72516 33 100.0 34 ................................. ATTTTGTCTGCGGTCGGCATTAAATCCTCAAAAA 72583 33 100.0 34 ................................. TCTGTAGTAACAATGGATTGGTTGGTATTTGTTT 72650 33 100.0 33 ................................. CAGCTGTTTGCCGCCGAACGGTGTTACAAAATT 72716 33 100.0 35 ................................. TGTACGAGTTTCGGTATCGGGTATAAATTCTGTTG 72784 33 100.0 36 ................................. TCACTTCCGGATTATCCGCAAGTCGGATATATCCAG 72853 33 90.9 0 ....................TA.T......... | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.5 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAGCTGAAAATTGTCAGCAGTTAATTGAAAATCCTCAGTCTTTATCATCGGAAGAAATGGCAATGCGAAAACTTCGCGGTCAGTTATTATTGGATCAGCAAGCTGCCGCTGAAGGATATACAGAGAATATACAAAGTGAAATTGATTCTTTTATACATCAGGAATGTCTTATCAATCGTGAAGGAAAACTATCTTTGACCGCTGAAGGATTGGGAGCTTTCTGGTTTAGCTTATTGAACGATGCTTATTATTAGAAACAGATAAAGGTCAGGAATGTTTCCTATAACATGTTCCTGACCTTTCTTTAAATTAGTAATAATTATTTACTTAGGAAAAATAAAGGATAATCTGGTGCGAACCTGAAGTGAACATAAAAACCTAGGGAGGTTCGCACCGGAAATTTGTGAAATTTATTTAAATAGTTGCAAGCTGCCAAGTGATTCGTTATTATAAGTATAGAATAAGTAACAAGTAAAACTTGTACAGTTTCTTATTTGCG # Right flank : TAGGGGCTTTAATCTCTGCTTACTCATTAATAGTTTGAATTTGTACCTCAAGCAATGTATTAATTATTATGATAGTGTGCTGTTTTTTACTTGATTGGAAAAAGTTAGCCAGATGTAAGATTTATTTTGTGGTAGGAATAATTAGGAAATAAGATATAATATAACTATCAGAGGCTGTGTATAGGAGGTGTGTTTATGTTATTAGCACACTGGGATGGAAAAGAACATCGAGCACAATCCCTAAAAGATCATAGTGAAAATGTAGCAAGAATAATGGAAGAAAATTGTTTTTCGCTTGGCCTTACATCAACTGGACGATTAATAGGATTACTCCATGATGCAGGGAAAGCCAATCCTGTGTTTCAGCAATATATGCTTGAAAATCAAACAGAGAAGAAAGGAAAAATCAATCATTCGGCAGCAGGAGCTCAGATCCTAAGAAAACTATTTTTTGGTACGGAATTTTGGACAATGCCGAAAAAGCAGCAACAATTCAGAAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 84064-85421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJCV010000008.1 Holdemania filiformis isolate MGYG-HGUT-00192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 84064 35 100.0 34 ................................... GTCCAGATCCCCGATCCAGATCGGAAAACTGCCG 84133 35 100.0 33 ................................... CTGAATATCGACATGCAGATTATCGATGATTTA 84201 35 100.0 37 ................................... CGGAACATGGTGGAAGTATAAGTCTGGATCAAAATTA 84273 35 100.0 33 ................................... TTTTACTCGCTGAATGATATCCGATATCTTATT 84341 35 100.0 33 ................................... GCCATTAGGCTCGACCCCTTACGCGCCGAACTT 84409 35 100.0 33 ................................... TGATACGCCGAATTCGGTGCAAATTAATTTTAT 84477 35 100.0 35 ................................... TTTCAAAAACCGATCCAGCTCATAATCGGGAACAA 84547 35 100.0 39 ................................... CGATAAACGTGTCTCCATGGCGCTTTGACGCGAACACCC 84621 35 100.0 33 ................................... AATTACGCAGATATTATTCAAGAGTTAAAATGC 84689 35 100.0 36 ................................... GGCACATCGGCCCCCACATCCTCACAGGGGAAGGAT 84760 35 100.0 36 ................................... GGTCTACAATAGGGGCTATTACAGCGATAGGAAATA 84831 35 100.0 34 ................................... ACCGGGTATCAGAATTCATACAATACCGGAACGA 84900 35 100.0 34 ................................... GCTAATCTCTGACGCGACCTGGGCATCGTTATGC 84969 35 100.0 35 ................................... ATATCGTTGAGAACGATACCGGTTAATACGTCCAC 85039 35 100.0 34 ................................... GAGAAATCCTACAACGCTGCGGTAGAAGCCGCAG 85108 35 100.0 35 ................................... ACTTAAGGAAAGTTCTTGGGTTCTTTTCTCTGTGT 85178 35 100.0 33 ................................... GCTCTGGCGTTATCCAACGCCTCCTTGTCACTA 85246 35 97.1 35 .................T................. TCGACCATGCTGCCAATTGGCGTGCACATCGCCAC 85316 35 100.0 36 ................................... CTGTCAAATTCTCCATGACTGCTTTAAGCTGGGTCT 85387 35 94.3 0 .................T...A............. | ========== ====== ====== ====== =================================== ======================================= ================== 20 35 99.6 35 GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Left flank : TTCTATTCTTAAACCGTGAGGGCTTGCCTAAAGTTGCAGGAAACTATGAGGGCATGGTGCGAGGACTGATTAAGAAGTATAACAAGTATCACACGGACAAGTTACCGAACATCACACCACATTCATTCCGACATACTTATTGTACGAATATGGCAAACAAAGGAATGAACCCTAACACTCTGCAATATCTCATGGGACACGCTAACATAACCATGACACTTGGCTATTATGCACACGGTACATTTCAATCTGCAAAAGCAGAACTGGAAAGACTGGCTTGTTAATATCGGAGCTTATATTTACTACTCATTTACTACTTTTGGTTGCATTTTCATGCTGGTAAATGCCAGCTTATGCAAGGTATCTTCCAAAAAGAAAATACCGATAAAGCCCTAAAATACGGGATATATCGGCATTTACCAACTTATGAAAAGATAATCAGAAATTTAGTAAGTTTTTGGTATAGAAACTATATTCTATATTTTTGTTTCTTATTTGCA # Right flank : TTTCAGAATACAGGGTGCTACTGTTAGATCTATTCAAGTCAAATTGTCAGCACTCACTGTAGGGAACATAACTAATTAGGTGATAGCATTTATAAATGTAATGTTGATCAAATCTCGAAGTATACAGGAAGTATGAGACAAATATCTATGAGGTAGAATCTATTAAATATTAGAGATATGATGCGAACCTCCGATTGGTATCTTAAGACTGAATAAACACAGCCATCTCCGATCAATTTAGGAATTCCTTTGAAATAGACTCTGATAATTAGTAAACTGTGGTATACTAAAGAAGAAGGAGTGATCCCGATGCAAGCCAAGAATGCCCCGCGCTATCAACAAATCGCAGCGGATATCGCTGCTAAAATTGCCGGCGGCGAATATAAAATAGGAGATAAAATTTTTGCCCGTTCCTCCCTGGCTTCACAATACCACGTTTCCAGTGAAACAGCGCGCCGCGCTATTTGTGTTCTTTGCGATATGAAAATTGTGGAATCCAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 134687-133650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJCV010000008.1 Holdemania filiformis isolate MGYG-HGUT-00192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 134686 33 100.0 34 ................................. CTGCGCCGGATTCAGTTTCAATGGTTCCAATGTA 134619 33 100.0 34 ................................. CCATCCTTACCATATAACGACGCTTGACGGCGGT 134552 33 100.0 34 ................................. ATAAGCGTTGAACCATTGTTGGGAGATTTAGATA 134485 33 100.0 33 ................................. CTTGTTGAGTGCGAATTTTAATTTTTCGATTTC 134419 33 100.0 35 ................................. TGAATCCGCCGTTAATATTACGGCTGATTACCTGC 134351 33 100.0 34 ................................. TCAGTCGCGTGAAATCAACGACATCCTAAGAGGT 134284 33 100.0 37 ................................. TGCTGGTAATAAGCATATACCATCCGGTGGTGCGTCT 134214 33 100.0 33 ................................. TGTTGACAGTGGGCTGGCTTTAACTGGAATTAG 134148 33 97.0 33 ..............A.................. GCTTTCAGGCGGTCGAATGCGCCGCCGATCTTT 134082 33 100.0 34 ................................. ACAATCATCATCGTATGTTTACAGCTCCGGCATC 134015 33 100.0 33 ................................. GCTTTCAGGCGGTCGAATGCGCCGCCGATCTTT 133949 33 100.0 36 ................................. TCGCCATTGAGGAGGCAGCCAGCGAGACAGCGCCTC 133880 33 100.0 32 ................................. ATGGTCAGCCATCAGTTTATCAATACCATCTG 133815 33 97.0 33 .................A............... GGTTTGAGTTAATTTCATTTCTCTTACACGATC 133749 33 97.0 34 ..........A...................... ACGTCGCATTTCGATTAGATTTTCATCAAACTTC 133682 33 87.9 0 ..........T..C.........T.A....... | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 98.7 34 GTCATACCGCGCGAGCGGTATGTGGGTTGAAAT # Left flank : TGGTTTATTTCCAGATCGTGCAGCAGTTTGAAAACAATTTGATTTATCCGCGGGTTGTGGGGAATTCCGTAGGTCTTCCGGGGATCTGGGTCTTGTTATCCATCGTAGTATTCGGCGGTCTGTTAGGGTTGTTCGGAATGTTGATCGCAGTTCCGGCAACGGCCGTTCTCTACACCTTGTTAGGTGAATTCGTCAATGGCCGGATGCGGAAAAAGGGACAGATTTTGAATGAATCCGGATTGCTCAGTATGGATTCGACTTCAAATCCTGAGCAGGAATCTTCATCTTCGAACGAGAATCAATAAGCTTAAGCGCAAGGTCTTCAAAGGCCTTGCGTTTTTTGTCCGCTTGGGTGCGAACATGAAGTGAACATAAAAAACCAGGGAGGTTCGCACCGTAAAAATGTGAATATTAAGGAAAATGTTGCAAGTACACTCAAGAATGTTTATGATAAGAGTGAGATAGGAAACATGCGATCTTAATTCAGTTTCTTATCTGCG # Right flank : CTAAGACCTATATACCCGCTGCCCCATCCGCTCATACTAACCTTATACTCACACACTAAAAAACCTGTTCTCTCCCGCCTTAAGCTGAGAAAACAGGCTTTTTTCATTTTACTCTAATCTACATCCTGATCTGTATCATTCCAAGCTCGGATCGTACAACCATCCTGATCCGGCTCCGCAACATAAACCCGGGCCGGATGATCCTGATCACTGACCACGAAAGCAAACTTGATATTCGTGCCAACACCCCAGCGCCCTTCCTTATCGACGCAAATTAAGGAAATCGCTTCAGCCCGGCCCCGTTTCCGAATTAACTTCCGCGTGAATTCTGCAACGAGCGATGAAGCCGCTCTCTGGGGATCCTGTCCCTGCTGCAGTCGGCGTACCGCCTCATAGCTCAGACACCCTTTCATGATTTCTTCGCCCACGCCCGTAGCGGCCGCAGCCCCGATCTCGCTGTCCGCATAGAAACCACTCCCGCAGACCGGCGAATCGCCCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATACCGCGCGAGCGGTATGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATACCGCGCGAGCGGTATGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //