Array 1 10484-11305 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZJN01000006.1 Escherichia coli isolate F2_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10484 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 10545 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 10606 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 10667 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 10728 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 10789 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 10850 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 10911 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 10972 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 11033 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 11094 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 11155 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 11216 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 11277 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18113-16760 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZJN01000018.1 Escherichia coli isolate F2_94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18112 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 18051 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 17990 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 17929 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 17868 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 17807 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 17746 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 17685 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 17624 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 17563 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [17537] Deletion [17523] 17521 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 17460 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 17399 29 96.6 32 ............T................ TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 17338 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 17277 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 17216 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 17155 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 17094 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 17032 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 16971 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 16910 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 16849 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 16788 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //