Array 1 21656-21095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBQ01000027.1 Lactobacillus amylovorus DSM 16698 Scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 21655 30 100.0 36 .............................. CTTCATTCAAAGAGTGCAAAAAAGATTAACGACAAA 21589 30 100.0 36 .............................. GGGCTTAATTACTCAAGCTGAATACCAAGAAATCGT 21523 30 100.0 36 .............................. TTGAACTGGATCAGTAGTAGCAGGTGTTCCGTTGTT 21457 30 100.0 37 .............................. TGATCTCAAGCAAATGATTAAGATATCTCTTAGTTAA 21390 30 100.0 236 .............................. CGTTCCAGTAAGCAAACCATATACATCAATACCTAGCCACATAATTTCTGTCGAACTCTTAAATACAACTCTATTTTAATGCCAAAATCAATTATAAGTTCTAAAAAAAGTTATCTTAAGTAGCTTCATCGTATCTGTCGATCTACCAACAAAAAACGCTTATTGGACATCGACAGATTTTTAACTAAAAACCATATTATGCTAAATAAGCATTTTCATCCAAGCCTTAAAGAAAA 21124 30 86.7 0 .....T......AC.....G.......... | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 6 30 97.8 76 ATTTACATTCCTCTTAAGTTAGATAAAAAC # Left flank : TACGTTCATGGTGCCACTTTATTGCAAAAATTAATGCTATGATTTGATCTTTAGTATAATGCTTCTGTAATTCATCAATTGGAAGCATCGTAATACTTAACAATGCATGCGGAATTTCACCTTTACAAAAGCTCTGCCCTGCTTTTACCTTTTTCTGAAAGCGTAGGTTCATTTTTCCTAAGTCGTGATAGCTACAAGCAATTTCTAAAAGCCGCCAATCGTCTTTACTACGAATATCTACCTGTTTTGTCATATCGTTAAATCGATCTTGACTAAGCCAAAAATTTTGAAATATATCTGGATAAGTTTGCTTTAATAAGCTATATTGCTTTAACAAATTATTAGTATGTTCAACGATCGTCTCACAATGATTTCCTTCAGATTGGTCTAAAGATTTAGCTAAATATTCATTCATCCTTTCACACTTTCTATCTTTATGGTTAATATCGTATATTCTCGTAAGTTAAATAAAGGATATGTACACCCCCTATTAGAGAGCG # Right flank : AGTTCCACTTGCCAAGTCTTATACATCAATGCTTTGTAATATGATTTCTATCGACCTCCCAAAACATATCATCATTTTGAGTCTAAATTAATTGGAATCTCTAGAAAAACTATTACATAAGGCTTTATCACATCTGTCGATTTACTGGTAAAAACTGCTTATTAGACATCGACAGATTTTAAACTAAGAACACTACATTATTATCTTCATCAACGTAACTCTTATAAACCGTAAACCCAGAAGCATATATAACTTCAACTTTATTCCATCGACGTTGTGTCTGACCTTTTTTTATCGTTACCAGTTTATAGTCCTTATTTAAGTAATAATGCGTTCCTTTATATCCAATACCTTCATTTTCAAGACCAATATTTTCAGACATTTCAACTGGTATATACGCACCATGATTTACAGTTAAGTCTTCATCCTTTTTTTCTACATCAACGATTTTTACTTCTTCAAAATTTGCCAAATCTTCTCGTCGACCTAGATTTGGAAAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 28230-26148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBQ01000027.1 Lactobacillus amylovorus DSM 16698 Scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 28229 30 100.0 35 .............................. TTTCACCAATGGGGTAATTGGACGACAGATGAACA 28164 30 100.0 37 .............................. CTAACGTTACCGTCCACGTTTAAGCCGTCCCAGTTGT 28097 30 100.0 35 .............................. CTGTATAACGTCCCATATGCTAAAGCTCAATTCTA 28032 30 100.0 36 .............................. TTCTTGATATTTCACCTAATGACACTTTGGCCCCAA 27966 30 100.0 36 .............................. TATTTTGACTTTGATTGTTGCTCATTATAAGTGAGG 27900 30 100.0 40 .............................. GAATTGTGGTCGAAGTTATGCGACTTGCTTATTCAAAGAA 27830 30 100.0 36 .............................. TGAAATGCGTGAGTTCGTATCAGTAGCGGTAAAATC 27764 30 100.0 36 .............................. TAAATTCTTGGTACTTGGTTCTAGTTATATCTTTAA 27698 30 100.0 35 .............................. GAGCCAATAATCATAGTTTTGAGCTTCTAATTCAT 27633 30 100.0 36 .............................. TGATTCCATCGTAAGACGTGCAATGCTGAAACATTC 27567 30 100.0 36 .............................. AAAACCTTGTTAAGACCTTTACCAGTGATATTTTCA 27501 30 100.0 36 .............................. GTGAGAAGTAATGGCAGGCAGTTGGCTTGATACTAG 27435 30 100.0 36 .............................. GTTTGCCAGGAATGTTTACTTCACCTAAGTTAACAA 27369 30 100.0 36 .............................. AGATATAGCCGACTGTTTAATTTCCCATATAGCAGT 27303 30 100.0 36 .............................. GCTTAAAGCTTCAATAGTCTTGTCGTTGTTCAGCTT 27237 30 100.0 36 .............................. AAATACTGCCCGTTACACCTAATGACAATTTAGCAT 27171 30 100.0 36 .............................. ACCAGCACTCATATCATAGCTAGTAATACTGTTGTA 27105 30 100.0 35 .............................. CTACTCAACAAGATAAAGACAAAGCAATGAAAGAA 27040 30 100.0 37 .............................. TTGACTGCAAGCGCGAATTAGTTCGCAGAGAAAAGAT 26973 30 100.0 37 .............................. TGTGCCAAACGTTAAACATTGACTTTTCAATAAAGTA 26906 30 100.0 36 .............................. TTTAAACAGTGTAAAAAAATGTGCGCGCGGAGAAGG 26840 30 100.0 37 .............................. TCACCTGATTTGTCTTTTAAGTGCTGCACTTCATTAG 26773 30 100.0 36 .............................. TGCTTATTATATAAAGAAAAAAGTTCATCTTAAATA 26707 30 100.0 35 .............................. ATGGTTGACCCATTTTTCAATGTGGGCCGTATCCA 26642 30 100.0 36 .............................. ACATGCATTTTCTGTTACCTCTAATCAAATGGAAGT 26576 30 100.0 37 .............................. CACTTACTTCTTTTGCGGTTAAAGAACGGATCTTAAA 26509 30 100.0 36 .............................. GGAGCATGAAAATGAATTTAAAAAGAGTTAAAAGAA 26443 30 100.0 37 .............................. TTAGGCAGTGAGGGCGATGATAAACTTGATGAACTTA 26376 30 100.0 37 .............................. TTATTTAAGCAATATGAGCGAGTATTAAAAGAACACG 26309 30 100.0 36 .............................. AAGTGTAAAGGGCGTTACTTGGTGAGTTCCATAAGT 26243 30 100.0 36 .............................. TGTATTAAGATCATATAAGCAGTTAGATTCTGATAC 26177 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 100.0 36 ATTTACATTTCTCTTAAGTTAAATAAAAAC # Left flank : GGTCCAAATGGACTTTTTATTTTCTATCAAGTGTTCAATTTAATTTTACAATCGGCGGCTAAAAAAT # Right flank : AGTTGCAACTACCAGTCCTACTGTATCAATAGATTCAACGGCCCTATCTGTCGACCTAACCAAAAACTCATCCAAAAATCACTAAAATCATTAGACAAATCGCACAAATATCATTGTACCGGTATTTTGCAAATCTGTCGATCTCCCAGGATTTTCTTCGTATCTTACATCGACAGATTCTTCTTTAGAATATATCCGACGTTAAATCAGTTAAATCCTGACCCATAAATTCTTTATCAAGCCAATCTTTATTTCTATTTTTGAATATAATCACTGAATCAACGTTCTGTCGAATCCATCTATCCAACTCATTCTTCAAGCTTTCAAGCTGGGACTTGGTTAGTTCACCTTCGAATACTGAATTTTGAACATGAGTTAAATACTTTTTACATATTTTGAAAACATGTCTACTTACTTTAGCACCTTGTTTATCCATTACGATATCGTAAACCAGAATCACATACATATCTATTACCATCCCATAACATAAGGCTCATAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCTCTTAAGTTAAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 94-1323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBQ01000018.1 Lactobacillus amylovorus DSM 16698 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 94 30 100.0 36 .............................. CCATAAGAAAGAACAACAGGATCAGTTTTGAGATCA 160 30 100.0 39 .............................. TAAATTAATAGGGCTTGGCGTAATCCTGAATTTGCGAGT 229 30 100.0 37 .............................. TGCTGAATGTATTTCATCATCATTGTTACAAGTTTGA 296 30 100.0 36 .............................. AAGAAATTAGCGACAAGCTAGGCAAGGATATTAAGG 362 30 100.0 36 .............................. TGCTGAAGATGACCCCTCAAGCACAAATTGGAGAGA 428 30 100.0 36 .............................. ATTTTAGATATTGATGTCATTGTCTAAAATATCAAG 494 30 96.7 36 ............T................. GTCTTTCAAGGTTATTTTTAAGCTCAATCAGGCCAT 560 30 100.0 36 .............................. TTGGATAGCTTTCAGCATTAGCTACAGCAGTTTGAA 626 30 100.0 36 .............................. ATCCGCTTTGGCGAGCAGATAGAGGGAGAGCTAACT 692 30 100.0 36 .............................. AACTTCTACCATGACTTGACTTCTGCACCTGGTCAA 758 30 100.0 37 .............................. TGGCTTACTAACACTGAAGACGTCATCGGCACTGCAG 825 30 100.0 41 .............................. TGATATAGTAAAGTAGCTAGAGTGTGACGAAAGCCATGCGG 896 30 100.0 35 .............................. AAGTAAAGTGGGTGTGAACCTGAAACATCTGGTAA 961 30 100.0 37 .............................. CACACTCATGCGCTTGATGCTCCAAAGGCTGATGCAG 1028 30 100.0 36 .............................. TTGCTTGTCGGTACCCAAACAATAATATTTATTTCC 1094 30 96.7 36 .............................G CTATAAACCTCTTCTTTAATTGCCTCTAAAAGTTCA 1160 30 93.3 38 ............T.............G... TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 1228 30 86.7 36 ..C.........TC....G........... AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 1294 30 76.7 0 .A......C...........G..AA...TA | ========== ====== ====== ====== ============================== ========================================= ================== 19 30 97.4 37 GTTTTTATTTAACTTAAGAGAAATGTAAAT # Left flank : ATCGCATCTATCAAAAAGCCTAAACAAAAGTGTTCAAGTTATTATTGCAATTTACGATAATTTTTTAGCAATGATGCAAGTTAAATTGTCAAAG # Right flank : AGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATATAAGGGTGGACGTGCAAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTATATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //