Array 1 155390-152502 **** Predicted by CRISPRDetect 2.4 *** >NC_009515.1 Methanobrevibacter smithii ATCC 35061, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 155389 31 100.0 34 ............................... GTATTACTTGTACCATGTAAATTCAACACTACTT 155324 31 100.0 34 ............................... ATACGAAACCAATAATTGCTACAAGCACTGCGAT 155259 31 100.0 32 ............................... TTAACTCCAGTAATTGTACTATATGCAGGAAT 155196 31 100.0 36 ............................... TACCATACTTCCGCATTAACATCATAATATCTAAAT 155129 31 100.0 36 ............................... TTTACTTTTTCAGTTTTTCTTATTTCTACTACTAAA 155062 31 100.0 34 ............................... AAAGGTAGAAAAACTTTACCTTGTTTGTAACCAA 154997 31 100.0 36 ............................... TCGTATAAAGGAACTTCTACTTATACTACTGCAACT 154930 31 100.0 35 ............................... GGAAATGATTAGTAAATCCATCACAGATACCTTTG 154864 31 100.0 33 ............................... TACTATGAAGAACCAGGATACACTGATTTTAGA 154800 31 100.0 36 ............................... TTATGACAATGAGTAATAGTACAAGATTTATTAATA 154733 31 100.0 38 ............................... ACAGGTTAGCGATTATCCTAACGCAATGCAATTAGAAT 154664 31 100.0 35 ............................... CGAATAATAATGGACAAGCATTATTCACATATACA 154598 31 100.0 35 ............................... ATTAACATCAGACAATGCTCCCATTGCTTTTCCTA 154532 31 100.0 36 ............................... CAACTAAAAACGGGATTGTAGAAGGCAACTGTATTG 154465 31 100.0 36 ............................... ATGTACTGGATACTAATTCTGATATGCCTTTCAGTA 154398 31 100.0 35 ............................... CTGGCAGTCGTGACCCTGTAGGTTACAAAGGAGGT 154332 31 100.0 37 ............................... AGAATTAACCTTGCAGTGTCCACAGCTTTTGCAACTA 154264 31 100.0 37 ............................... TCTGTCGGATTCACTGGTCATAGTATCATAAACTAAA 154196 31 100.0 36 ............................... AACATTAAAAGTACATGCAGGACAATGCATGTACAA 154129 31 100.0 36 ............................... CTTGTAAACTTTTAACACCATTGGCCATATTAGTAA 154062 31 100.0 37 ............................... TGGAGTGAAGATGACATTAGAATGTTAAGACGTGATG 153994 31 100.0 36 ............................... GAAGTTTACAAGATTTTAATTTTGATTGCAGGAGCA 153927 31 100.0 36 ............................... AAAACTATTGAAATGGAAATTGAGGTTGGTGAATGT 153860 31 100.0 36 ............................... ACACATTCAACATAACTGAAGAAGAACTACATCAAA 153793 31 100.0 36 ............................... TATATTACTTTATACCGTCTACTATATAAATATATT 153726 31 100.0 36 ............................... TGGATTATTAGATATTCCAGCACCATTTAAACCAGT 153659 31 100.0 35 ............................... ACGAGGAAACAAATCTTGTTATCAAAAAGGAAGAT 153593 31 100.0 37 ............................... ATAGAACCCATGGTTTTCAGATTATTTGTATACTTTT 153525 31 100.0 36 ............................... AGAATGGAAAAAATCAACAAATTTGATAGTGTGGAA 153458 31 100.0 32 ............................... CCAAATTGGTTTACTGGTATGATAATGTATGG 153395 31 100.0 36 ............................... AATATATAATTTGTAATGGCAAATGTTTTAACTGTC 153328 31 100.0 35 ............................... TATGAAAGGTGTTTTTATGATGTCAGATGTATTAG 153262 31 100.0 36 ............................... TTAGTTACGTAAATGATTTATTATTAAACGACACAG 153195 31 100.0 37 ............................... ATCAGTGAAGTGATTTATAAAAGGAATGATTTAGATA 153127 31 100.0 34 ............................... TAGTCAGGTTTATTGCTTGAATGGTTTTTTGTAG 153062 31 100.0 35 ............................... AATATTCATATAAATGAAAATGGTATGATGGTGAT 152996 31 100.0 33 ............................... GATGGTATTAAAACAAAATTGTCCAAAATAGGA 152932 31 100.0 34 ............................... GTAGGTATTTCTTTAACTGTGATTTCTAATTCAA 152867 31 100.0 35 ............................... TGAGCAATATAAGGATCACTGTTTCTTTTGTGAGT 152801 31 100.0 36 ............................... CAAGAAAGTCATCTTAAGTCTACAGCATCATATAAT 152734 31 100.0 37 ............................... TACACATGATAAAGTAATCATGGAAAATGATAACCTG 152666 31 100.0 36 ............................... TGTACTGCATATCCATTCTCCAATAAAACATCATCT 152599 31 100.0 36 ............................... GCTGGATTTGCACAATTATATAAACTTAGGTCAACT 152532 31 96.8 0 ..........................T.... | ========== ====== ====== ====== =============================== ====================================== ================== 44 31 99.9 35 GTTAAAAATAAGACTATAATAGGATTGAAAT # Left flank : AAGCTAGTGAAAGCGAGTTTAAGATAATTCATGATGGTTTAATGAAAATAATTGATACAGAGGTTGATTCAGTTATAATTTATAAATTAAGAATGGCTGATGTGATGAATCGTGAGGTTTTAGGTATTGAAAAAGCACCTATCGATGAAATTTTATAAATTTGATATTTTTAATTTTATTTAAACTGTTAAATTTGATAAAATAAATTTTAAAAGCTTTGTTTATCACATGTTTTATTTTTTGATTATTTTTTAGCTATTTAAAAAATTTTATTTTTTGATTATTTTTTTAAGTTTTATTTATTTAAATGGGATACTTCTCTTTTAAATAGGTTGATATTTTATTTTATAAATTTCTAAGTTTTATTTTTTATTTTCAATTATTTTGTCTTCTTTGTTGATACATATAAATAAAAAACATTTTTTATAATCAACAAATTTAAGTGCATGAATAAATAAATTATAAATTGGTTTTGCCCGTTTTGAGAAAAAATGTGGCCT # Right flank : CTTAATATCTTTTAAAAACTTGGATGTAATCAGTTAAAATAATGCACTATGAATTGAAATAATCAAATGTTTACTTTGTACTATCATTATTTTTTTAAACTCCAAAATTTAATATTAAATCATGTGTTCAATAGTTGGTCTTCAAGGTAATTTCAAAGCTGATGATTTAATAGCTATGTTAAAAACATCAAAAAATAGGGGAAAAGATGCTTCAGGAATATTTTTAGATGGTAAAATACAAAAAGGTATTGATTTAAATGATTTCAATGATAAAAACGCTTATTATTTAGGTTTAGGCCATAATCTGCTGGCTGTCCATAATTTGGAAAACAGAACTTCCCATACTCAGCCGATAGCTAAAAACACTCTGACTCTGGTTTTCAATGGTGAGATTTATAATTATTCTTCCCTAAAGAATTTGCTGGCTAAACTGACAAAAAATGACAATATAAATTCTGATTCTGAGTTATTAATTAATCTGATTGATTTTTATTATAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //