Array 1 135940-133001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTT010000004.1 Listeria portnoyi strain FSL L7-1582 NODE_4_length_171959_cov_30.574481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 135939 36 100.0 29 .................................... TAAGAGAGTAGTAAGAAACACCACTACAA 135874 36 100.0 30 .................................... TTATGTGCAACAGCGTGGCGGTAGATATAC 135808 36 100.0 30 .................................... AGCAAGCTAAAGATGTTGCCTTCTACCTTA 135742 36 100.0 30 .................................... ACTTTCTAGTACAACTCTTGAGATGTCGCG 135676 36 100.0 30 .................................... ATCGTTCTTGAAATTGATTGCCGTCAACTG 135610 36 100.0 29 .................................... TCGTTTTGCGGGCTAGTGGTAGGTACGGT 135545 36 100.0 30 .................................... AAGCTTTCCCGCTTCCCTCTTCACGTCCAT 135479 36 100.0 30 .................................... AAATCTTCTTAAGAACACGATTAAGAATAT 135413 36 100.0 30 .................................... GACGGTGGAGCATGGCAAAATATCGCTATT 135347 36 100.0 30 .................................... CCAGCACCGATAATAAGCCTACCCCATATC 135281 36 100.0 30 .................................... TTAGAGTATCTGCATCTCCCTTTGTTCTAC 135215 36 100.0 30 .................................... AAAGGTAGGTGATAGAATTGACAGGTTATG 135149 36 100.0 30 .................................... AGAAATATGTCTCTGAGGGATCACTTGAAT 135083 36 100.0 30 .................................... ATTTGTATGCCTGCGTTGATAATTAACGGC 135017 36 100.0 29 .................................... CTTAACATTCGTGGTTCCAAAGGATACGG 134952 36 100.0 30 .................................... TGATGTTATTCGGAAAAAGGATGTACTTGC 134886 36 100.0 30 .................................... GGTGAGGAAGGTGAATTGTAATGAAACTTC 134820 36 100.0 30 .................................... AACATTCAATTTATCGCTTTCTGCGAATGC 134754 36 100.0 31 .................................... TTCCCTCGAAACTTTGCCATCACTAACACTT 134687 36 100.0 30 .................................... AAGCCTGTAACGCCCAAAGGACGTTGATTC 134621 36 100.0 30 .................................... TCCAGTTACGCGCTATTAACGCTATCTCTA 134555 36 100.0 30 .................................... AGCTGTTACTTCGTCCGCCTTTTTTTTGAC 134489 36 100.0 30 .................................... TGAGCTGCGTATAATCTTGAACAAATAAAT 134423 36 100.0 30 .................................... CGAATGATAAAGCCAAGCGCAGGCACCATC 134357 36 100.0 30 .................................... TACATTGATAATATCTAGCCCAAACATAGG 134291 36 100.0 30 .................................... GAACAACAACTAGAGAAAGCCTATAGCGCA 134225 36 100.0 29 .................................... TTTCAAGTGGAGCGATTGCCAGATACCTG 134160 36 100.0 30 .................................... TACGTTGGATCACATCAGAACGGTATCGTT 134094 36 100.0 30 .................................... TAGCTCACGTTTTCAGCAACAGACGTATCT 134028 36 100.0 30 .................................... TGATTCATCGCTTTTAACAAATAACCTGCA 133962 36 100.0 30 .................................... CGGCGTTGGGAAGTGCGTTCGTAACATTCT 133896 36 100.0 31 .................................... TTTGGTCTTGCTTTAATAGGACGTGCGGCTA 133829 36 100.0 30 .................................... TTCTAGTGCGAGTGGCTGGCTACAACTATA 133763 36 100.0 30 .................................... ATTTAGCGGGTTCTGCGTACTGCTCTCTGT 133697 36 100.0 30 .................................... TTCACGGTGAGCGGTATATAGGTTCCGTCG 133631 36 100.0 30 .................................... CTCTCTCACTAAATCCGCAATTACGCTACT 133565 36 100.0 30 .................................... ACGTATCAGACGGACAATTAACCACATACT 133499 36 100.0 30 .................................... GCCACGTATAAAAGAACTTTTAAGTGACAT 133433 36 100.0 30 .................................... GCGGCTGTTACCTTGCCTTTTTGATATTCT 133367 36 100.0 30 .................................... ATCGTATCAGAATCAGTAATCGTAAATGAT 133301 36 100.0 30 .................................... TTTCACTCAAAAGAAAACTGCATCTGAATA 133235 36 100.0 30 .................................... CGAACACAGGATTTATGAAGAATTATTTGC 133169 36 100.0 30 .................................... TTGATTGTTCGGGATTAACACAATGGTGTT 133103 36 100.0 29 .................................... GTCCGCAAGTCACGCCATGCTTGCGTCCG 133038 36 83.3 0 .......................A.A.A.CA....A | A,C [133015,133019] ========== ====== ====== ====== ==================================== =============================== ================== 45 36 99.6 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : ATACGTTGCATTATGATGAATACGAAAAGATTATGAGGCAAATAGAGATTTTAACAGAGAGACATCCGCATTTTTTTAGTATTATATTTCCCAGTCAGATTGGCTATGTCTATGTGAGTGAGCGGTATATTGAGAATATTTTAGTGGCTGGACGGGAAGTTCATGCGCTTGTTGAAAGTGAAGTTCTGTATGAGCGGGTGTGTAATAATTATCCTGACATGTCTGTGCCGAGCTATGTTGATTTTATGAACTACTTGAAGACAGTGGCACCGTATCTGTTTACAAATAAAAAACAAAGTATTCAAATGTCTCTACGGGAGCTGGTCTTGATTAAGATTATAAATGAGCTGTTTTGCTATTATGATTTTGAGGCAGGAATGATCGATACGTATACACAATTGGAGTATGAATTCCTGTATAGTGAGTAATAGCAGGATGTTGAAGCCTGTGTTATAATGAAGGAGCAGTAGTTTTTACTAGGAACCTTAGTGTGATTTGAG # Right flank : GATGGAGTCCTAATCGTTGACTCTGTCTTTTCGCTATGCTATTATAGTAAGATGCCAAAAGAATCGATATCACCATATTTAGCGGTGCGTACGCGAGGAATTGCAGTTTTAGCCTGTTTGGTTCACATAGCAAGAAAATAGTGGTTTTCTTTGAGGAACCCGCTTTCTTTTTGTCTTTTTTAGGTATTTTTGCCAAGTTCCATTGTACTATTTTTGCTGCAATGTGCTTAATAAATTTAGTTTATTTGAGAGGGTGAATGAGTTGTCAGGTCAACTAGTTCAGTACGGAAGACATCGCCAACGTAGAAGTTTCGCTCGTATTAGTGAAGTGTTGGAGTTACCAAACTTAATCGAGATTCAATCGAAGTCCTACCAATGGTTTTTGGATGAGGGATTACGTGAAATGTTCCGCGATATTTCTCCAATTGAGGATTTTGCTGGGAATTTGTCACTAGAATTTATCGACTACAATTTGGGAGATCCGAAATATTCAGTAGAAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 13171-12937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTT010000007.1 Listeria portnoyi strain FSL L7-1582 NODE_7_length_134821_cov_26.094030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13170 36 100.0 30 .................................... GGATTTAACGTACTTCACAAGTACAGAGTT 13104 36 100.0 30 .................................... AAAATGGACGAGATTATTGTCGGAGAGTGC 13038 36 97.2 30 ..............C..................... TATGAAAATAATGTAACACCAATCGTTTGG 12972 36 80.6 0 ..............C............A.A..TCCG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TGCTATTTCTTTATTAATCGCTTTATTAATTGCCCGCTGACGCCTATCCTTTACTTTCTCATCAAGCTTTCTCACAGTTTTATTGAGGATACTCTTATAAAATGACTCTTTTTTCTTATCAAATATAATTTCTGTCGTCTTATTTCCATCGATACCTTCATAAACCAGTTGACCTTCCTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCTACTCTCATCTTTGTGATTTTCATCTGCCTACTCAGCTCCATTTGATTTTATAGTCATGCGCCTAATGCTTCATTATTGCTGAAATTTTAATTGGTTTCTTCATGTGTGTATGAAATTTCTATTATTTATCAATATATTCATTATACAAGAAGGCACGTTGTAAGACAACATTCACTGACGAATCATCTACCATACTAAGAATTGAATAAAGCCATAAAAACCAATAATCCAGCTCTTTGGATCACAGTTTTTATGGCTTTATTTCGAATACTTATCCACAAAAGAG # Right flank : CCTATTCGCTTGCAACAACATAACTATACCAGATTATTAATGAATCTGCAGCTTGACAGATTAGCAAAACATAATTATTTTTTCATAAATTAAGAGACAGCTCAGCAGCCATCTCTTAAATTCAACCAATTATCTTCTGCTAACAAAATACCTTCCTTCTTGAAACTCTTCATAATAATTCAATACCTGTACCTCAAGTTTTTGTAAGTCAGCAACTGGGTTTTTAAGCAGATTTTCAGTTAACTGCTGCCAATGAAATTTTTACAATTACCGATATTAATAAATAGCAAAATTAAAAATCTAAGTTCAGAGAAAATGTTGCTAGTTCTGATTTCAATTAGATTTTTGTGTTGAATTATATCATAGGAATCTCAATATCATTTCCCTCTATACCATCCAAGAAAAAACCGGGTATGTTTGGATTCGATTTTTTCAATTTAAATAGTTGTACCTTAGTCAACTCTGGATAATATGAAATACTGCTGCGCTTGAAAACATCC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 17276-16645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTT010000007.1 Listeria portnoyi strain FSL L7-1582 NODE_7_length_134821_cov_26.094030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17275 36 100.0 30 .................................... GATTTCAGAAATATGCGGACGATTTCCTTA 17209 36 100.0 30 .................................... TCAATGGAATATAGAATTCTAAATTCAGAT 17143 36 100.0 30 .................................... TACAACTGTGACTTACTCTTATTCTTATTA 17077 36 100.0 30 .................................... ATTCCGCCTATTACAGCAACGATAATAGTA 17011 36 100.0 30 .................................... TAAGGCGCAAACGAAGAAAGCTAAGGCGGA 16945 36 100.0 30 .................................... ATGTCAAGGCAGATAGTAAGGAATTAGCTG 16879 36 100.0 30 .................................... ATGAACACGGAGATCACACGGCAGGCATTA 16813 36 100.0 30 .................................... GGTGTCGAGATTGCCTACGACAAGGCAAGC 16747 36 94.4 30 ................T.......C........... ACTTGTAGACCGTCTCACTCGATTATTCTA 16681 36 83.3 0 .......C........G..........T.T.T...A | T [16648] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 30 GTTTTAGACCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : GACGAGTATTTAGAGAAAACCGAGCAGGACGATGAGGAGATTTTCTTTGAAGCTTGTGATCGTTTCGCCCTAACCGCCGATGAAAAAGCGGAGATTCATACCGATATTGTGTTACCAGAAGCCTTAGAGTGGGATGAAGACGATGATTTAGAAATTATTTTTCCTAAAATTGTAGCAACTCTGAAATAGGTCATCTATTTCAGAGTTTTTTTGTGGCAGAGATACGAAAAAAAGCACCATAAACCGCGTCATGACAACAGTTTATGGTGCTTTCTTCATTTCCTAAAAACGGAGAAACGGGGATTCTGACGGTTGGATGAAATGCACTCGTGGTGCTGGTTTCAATGCTTATAATGTTGGCTGTGTGGCAATTTTGTGGCAAATATTTTTAAGAAGATGGCGAAGATTTTATTCGTCATCTTCTTTGTTGTGCGAGATTCTAATACTCTTCTGTTTAAAGGGCTCTAGATTTTTTACATAGCTCATCGTTTCAATTTGAG # Right flank : GCAAAATGAAATTGCATTCTCCCATCCAATTTCATTTTGAAATTAACTGCAACATTCTATATCAAATTTCTAATAGTCTCTTTACTATACCACAATACTCTTCTGAAACTTGATTTGTTTCTATATAACCATTATCGATTTTTTTCTCACCTAGATGTCTCAATTTTTTTGGCTCTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATACGACGCTCATACCATGTCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTTAAAAATTTCTCTCAACCTCTCAGATAAATACAGCAACGTGCACTCAGATTTGAGTGATAAATAATTTAAATGCGCTATATGATTCCTTGCATTTTTCTCAGAAACAAACAGTCCTTCTTTTTTCAAGAATGTATCCAGCTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTCCACTCTCTCAGTTATTCCTGAA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGACCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //