Array 1 352471-351834 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QEPR01000002.1 Haemophilus parainfluenzae strain C2005004058 C2005004058_S6_ctg_535, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
    352470	    32	 100.0	    36	................................	GTTTCCACTTTCACGAATTCAATGCCTTCCGGTGGA 	
    352402	    32	 100.0	    35	................................	TTATCAAAACAACTTTTCTATTATTGCGTGGACAG  	
    352335	    32	 100.0	    36	................................	ACTACGCCTTTACTGTGGAATTTAATTACCGCTTTT 	
    352267	    32	 100.0	    34	................................	CAGAAACCGCATTTCAATGTAGTTTGAATCTCCT   	
    352201	    32	 100.0	    37	................................	TATCAACAAATTATAAACGCTAAATTCGGGGGAGACG	
    352132	    32	 100.0	    37	................................	AGTTTTGAATGTGAATTGAGTGATATTGATGTGGTGG	
    352063	    32	 100.0	    36	................................	GTCAATCTTTTGTTTTTTTGCGTAGCATTACCAACT 	
    351995	    32	 100.0	    33	................................	CGTGCCTTGTATTTTTACGTGAAAAAATTCCGT    	
    351930	    32	 100.0	    33	................................	AAATCACTGGTAAGGATAACTATATCCGATTTG    	
    351865	    32	 100.0	     0	................................	|                                    	
==========	======	======	======	================================	=====================================	==================
        10	    32	 100.0	    35	GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGTGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTTATGTTGAAAAACAAACTGCTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGATGCGGCCGTTATACTTACCAAACTCCTTATCATAAAGTCAGTTAGCGAAATACAGTGTTTAATTAGCTGATTTTTCTTACTTTTTTATGTAGGGA
# Right flank :  ATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTCTAGGCGGTTTTACGTTGCAATAAAACTTAATAAATTTAAATAGTATAATATTTGCCGCCCTACTCTATCTCTCAAGCCAATTCATGCCCAACAACATTCCCCCTTGTATTTCCCCCTTATTCGCTCTAGACTATTCGCCATTTTTAACTTTCATTATTTACAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCTGATGAGCTGATTGCTCGTTATCCTAAAGAAGATCGCTCTTCTTGCCGTTTGCTACAACTCAATGGCGAAAACGGGGAAATTTCTCACCGCACTTTTACCGATGTATTAGATTTAATCGATGAAGGTGATCTGTTGATTTTTAACAATACGCGTGTAATCCCAGCTCGTATGTTTGGTCGTAAAGCCAGTGGCGGAAAAATTGAAGTGTTGGTGGAACGTGTTTTAAGTGTACATCATTTCTTAGCGCATATTCGCTCAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.20,-6.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.14   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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